EMLSAG00000003774, EMLSAG00000003774-686540 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003774
Unique NameEMLSAG00000003774-686540
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000003774 vs. C. finmarchicus
Match: gi|592788505|gb|GAXK01166063.1| (TSA: Calanus finmarchicus comp166_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 40.0466 bits (92), Expect = 7.490e-5
Identity = 19/41 (46.34%), Postives = 27/41 (65.85%), Query Frame = 0 
Query:    1 MSTPYNVGIKLNKETINEEVLKDPMKKKKVGQLVCNDFKDH 41
            M T Y+V I  +K  IN+E++KDPMKKKK   +V   F++ 
Sbjct:  269 MPTRYSVDISFDKTNINKELMKDPMKKKKARNMVRTKFEER 391
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BLAST of EMLSAG00000003774 vs. C. finmarchicus
Match: gi|592788506|gb|GAXK01166062.1| (TSA: Calanus finmarchicus comp166_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 40.0466 bits (92), Expect = 8.693e-5
Identity = 19/41 (46.34%), Postives = 27/41 (65.85%), Query Frame = 0 
Query:    1 MSTPYNVGIKLNKETINEEVLKDPMKKKKVGQLVCNDFKDH 41
            M T Y+V I  +K  IN+E++KDPMKKKK   +V   F++ 
Sbjct:  269 MPTRYSVDISFDKTNINKELMKDPMKKKKARNMVRTKFEER 391
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BLAST of EMLSAG00000003774 vs. C. finmarchicus
Match: gi|592827384|gb|GAXK01129258.1| (TSA: Calanus finmarchicus comp2082841_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.492e+0
Identity = 14/42 (33.33%), Postives = 26/42 (61.90%), Query Frame = 0 
Query:    1 MSTPYNVG----IKLNKETINEEVLKDPMKKKKVGQLVCNDF 38
            +S P+N+G    +++++E  +E VL++P+K       VCN F
Sbjct:  449 VSCPWNLGHSITVQVSEELGDELVLRNPLKWVYT*HCVCNSF 574
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BLAST of EMLSAG00000003774 vs. C. finmarchicus
Match: gi|592827385|gb|GAXK01129257.1| (TSA: Calanus finmarchicus comp2082841_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 2.495e+0
Identity = 14/42 (33.33%), Postives = 26/42 (61.90%), Query Frame = 0 
Query:    1 MSTPYNVG----IKLNKETINEEVLKDPMKKKKVGQLVCNDF 38
            +S P+N+G    +++++E  +E VL++P+K       VCN F
Sbjct:  461 VSCPWNLGHSITVQVSEELGDELVLRNPLKWVYT*HCVCNSF 586
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BLAST of EMLSAG00000003774 vs. L. salmonis peptides
Match: EMLSAP00000003774 (pep:novel supercontig:LSalAtl2s:LSalAtl2s2045:1412:1821:1 gene:EMLSAG00000003774 transcript:EMLSAT00000003774 description:"snap_masked-LSalAtl2s2045-processed-gene-0.1")

HSP 1 Score: 139.813 bits (351), Expect = 1.291e-44
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 
Query:    1 MSTPYNVGIKLNKETINEEVLKDPMKKKKVGQLVCNDFKDHYKKYSKFVFKYVWSSNRYLVLFNYILNK 69
            MSTPYNVGIKLNKETINEEVLKDPMKKKKVGQLVCNDFKDHYKKYSKFVFKYVWSSNRYLVLFNYILNK
Sbjct:    1 MSTPYNVGIKLNKETINEEVLKDPMKKKKVGQLVCNDFKDHYKKYSKFVFKYVWSSNRYLVLFNYILNK 69
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BLAST of EMLSAG00000003774 vs. L. salmonis peptides
Match: EMLSAP00000005005 (pep:novel supercontig:LSalAtl2s:LSalAtl2s260:403367:403765:1 gene:EMLSAG00000005005 transcript:EMLSAT00000005005 description:"augustus_masked-LSalAtl2s260-processed-gene-4.5")

HSP 1 Score: 60.8474 bits (146), Expect = 1.607e-13
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 0 
Query:    1 MSTPYNVGIKLNKETINEEVLKDPMKKKKVGQLVCNDFKDHYK 43
            M T YNV IK +KE+IN+EVLKDPMKKKK  QLV NDF++ YK
Sbjct:   77 MPTRYNVDIKFDKESINKEVLKDPMKKKKARQLVRNDFEEKYK 119
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BLAST of EMLSAG00000003774 vs. L. salmonis peptides
Match: EMLSAP00000010695 (pep:novel supercontig:LSalAtl2s:LSalAtl2s709:143943:144283:1 gene:EMLSAG00000010695 transcript:EMLSAT00000010695 description:"maker-LSalAtl2s709-snap-gene-1.3")

HSP 1 Score: 53.5286 bits (127), Expect = 6.099e-11
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 0 
Query:    1 MSTPYNVGIKLNKETINEEVLKDPMKKKKVGQLVCNDF 38
            M   YNV IK +KE IN+++LKDPMKKKK GQLV NDF
Sbjct:   63 MPIRYNVHIKFDKEFINKQILKDPMKKKKAGQLVPNDF 100
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BLAST of EMLSAG00000003774 vs. L. salmonis peptides
Match: EMLSAP00000008855 (pep:novel supercontig:LSalAtl2s:LSalAtl2s552:66828:67919:-1 gene:EMLSAG00000008855 transcript:EMLSAT00000008855 description:"snap-LSalAtl2s552-processed-gene-0.37")

HSP 1 Score: 47.3654 bits (111), Expect = 1.205e-8
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 0 
Query:    1 MSTPYNVGIKLNKETINEEVLKDPMKKKKVGQLVCNDFKDHYK 43
            M T YNV    +KE+IN +VLKD M+ K+  QLVCNDF + YK
Sbjct:    1 MPTRYNVDSNFDKESINLDVLKDTMEMKEGRQLVCNDFDNKYK 43
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BLAST of EMLSAG00000003774 vs. nr
Match: gi|225714122|gb|ACO12907.1| (60S ribosomal protein L27 [Lepeophtheirus salmonis] >gi|290561357|gb|ADD38079.1| 60S ribosomal protein L27 [Lepeophtheirus salmonis])

HSP 1 Score: 60.8474 bits (146), Expect = 3.253e-10
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 0 
Query:    1 MSTPYNVGIKLNKETINEEVLKDPMKKKKVGQLVCNDFKDHYK 43
            M T YNV IK +KE+IN+EVLKDPMKKKK  QLV NDF++ YK
Sbjct:   81 MPTRYNVDIKFDKESINKEVLKDPMKKKKARQLVRNDFEEKYK 123
[Close]
BLAST of EMLSAG00000003774 vs. nr
Match: gi|290462955|gb|ADD24525.1| (60S ribosomal protein L27 [Lepeophtheirus salmonis])

HSP 1 Score: 60.8474 bits (146), Expect = 3.298e-10
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 0 
Query:    1 MSTPYNVGIKLNKETINEEVLKDPMKKKKVGQLVCNDFKDHYK 43
            M T YNV IK +KE+IN+EVLKDPMKKKK  QLV NDF++ YK
Sbjct:   77 MPTRYNVDIKFDKESINKEVLKDPMKKKKARQLVRNDFEEKYK 119
[Close]
BLAST of EMLSAG00000003774 vs. nr
Match: gi|225711028|gb|ACO11360.1| (60S ribosomal protein L27 [Caligus rogercresseyi])

HSP 1 Score: 52.7582 bits (125), Expect = 4.096e-7
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 0 
Query:    1 MSTPYNVGIKLNKETINEEVLKDPMKKKKVGQLVCNDFKDHYK 43
            M   Y V  K +KE IN+EVLKDPMKKKK  Q+V NDF+  YK
Sbjct:   81 MPARYTVDTKFDKEAINKEVLKDPMKKKKARQIVRNDFESKYK 123
[Close]
BLAST of EMLSAG00000003774 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold1323_size47899-snap-gene-0.17 (protein:Tk03421 transcript:maker-scaffold1323_size47899-snap-gene-0.17-mRNA-1 annotation:"60s ribosomal protein l27")

HSP 1 Score: 42.743 bits (99), Expect = 5.737e-7
Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 0 
Query:    1 MSTPYNVGIKLNKETINEEVLKDPMKKKKVGQLVCNDFKDHYK 43
            M T Y+V I  +K  +N+E LKDPMKKKK   +V   F++ YK
Sbjct:   81 MPTRYSVDIGFDKANLNKETLKDPMKKKKARNMVRVQFEERYK 123
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003774 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003774 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592788505|gb|GAXK01166063.1|7.490e-546.34TSA: Calanus finmarchicus comp166_c0_seq2 transcri... [more]
gi|592788506|gb|GAXK01166062.1|8.693e-546.34TSA: Calanus finmarchicus comp166_c0_seq1 transcri... [more]
gi|592827384|gb|GAXK01129258.1|2.492e+033.33TSA: Calanus finmarchicus comp2082841_c0_seq4 tran... [more]
gi|592827385|gb|GAXK01129257.1|2.495e+033.33TSA: Calanus finmarchicus comp2082841_c0_seq3 tran... [more]
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BLAST of EMLSAG00000003774 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000037741.291e-44100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s2045:1412... [more]
EMLSAP000000050051.607e-1369.77pep:novel supercontig:LSalAtl2s:LSalAtl2s260:40336... [more]
EMLSAP000000106956.099e-1168.42pep:novel supercontig:LSalAtl2s:LSalAtl2s709:14394... [more]
EMLSAP000000088551.205e-855.81pep:novel supercontig:LSalAtl2s:LSalAtl2s552:66828... [more]
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BLAST of EMLSAG00000003774 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003774 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003774 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 3
Match NameE-valueIdentityDescription
gi|225714122|gb|ACO12907.1|3.253e-1069.7760S ribosomal protein L27 [Lepeophtheirus salmonis... [more]
gi|290462955|gb|ADD24525.1|3.298e-1069.7760S ribosomal protein L27 [Lepeophtheirus salmonis... [more]
gi|225711028|gb|ACO11360.1|4.096e-760.4760S ribosomal protein L27 [Caligus rogercresseyi][more]
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BLAST of EMLSAG00000003774 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold1323_size47899-snap-gene-0.175.737e-748.84protein:Tk03421 transcript:maker-scaffold1323_size... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s2045supercontigLSalAtl2s2045:1412..1821 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s2045-processed-gene-0.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003774 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003774EMLSAT00000003774-699621Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s2045:1412..1821+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003774-686540 ID=EMLSAG00000003774-686540|Name=EMLSAG00000003774|organism=Lepeophtheirus salmonis|type=gene|length=410bp|location=Sequence derived from alignment at LSalAtl2s2045:1412..1821+ (Lepeophtheirus salmonis)
ATGTCTACTCCTTACAATGTGGGCATTAAGTTAAATAAGGAAACCATCAA
CGAGGAGGTCCTCAAGGATCCAATGAAAAAGAAAAAGGTCGGACAACTTG
TCTGTAACGACTTCAAGGATCATTATAAGTACGGAAATAGCAAATTTTTC
TTCCAAACGTTAAGATTCTAAGAGGAAGAGTGATGATTCTGTACATTCTA
TTGAAGTATTACTCCCTTTGTACATAATGATTTTGTTTCCAAGCCTTTAT
TGCTAAAATATAATAGGTATTCAAATCTTCAAACTCAAAATAATAATAAT
ATAAAAAATGATTTTTTATAATTACCAGGAAATATTCTAAATTTGTCTTT
AAGTATGTTTGGTCTTCAAATCGTTATTTGGTTTTATTCAATTATATTTT
AAATAAGTAA
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