EMLSAG00000003888, EMLSAG00000003888-686654 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000003888 vs. C. finmarchicus
Match: gi|592872641|gb|GAXK01084921.1| (TSA: Calanus finmarchicus comp6464362_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 2.956e-1 Identity = 14/45 (31.11%), Postives = 20/45 (44.44%), Query Frame = 0 Query: 45 NALTFPCPHRHYRKSGTCIPCTNC---HSQGLDILSPCSQSQDEI 86 N CP HYR G C+ C C + G ++ CS + D + Sbjct: 1 NNTCIQCPSGHYRSGGNCLECKTCDGGNKGGRRTVTACSATADTV 135
BLAST of EMLSAG00000003888 vs. C. finmarchicus
Match: gi|592836572|gb|GAXK01120972.1| (TSA: Calanus finmarchicus comp1464328_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.7278 bits (73), Expect = 3.034e+0 Identity = 13/30 (43.33%), Postives = 15/30 (50.00%), Query Frame = 0 Query: 58 KSGTCIPCTNCHSQGLDILSPCSQSQDEIC 87 K TC PCT C+ GL PC +D C Sbjct: 346 KKETCSPCTRCNQPGLVTFIPCGYFRDTRC 435
BLAST of EMLSAG00000003888 vs. L. salmonis peptides
Match: EMLSAP00000003888 (pep:novel supercontig:LSalAtl2s:LSalAtl2s210:267461:269018:-1 gene:EMLSAG00000003888 transcript:EMLSAT00000003888 description:"maker-LSalAtl2s210-snap-gene-2.26") HSP 1 Score: 890.182 bits (2299), Expect = 0.000e+0 Identity = 439/439 (100.00%), Postives = 439/439 (100.00%), Query Frame = 0 Query: 1 MLDIWVLLQCLLLLCLSYCSEYSRASLLSLSAHGERAVDHSHQGNALTFPCPHRHYRKSGTCIPCTNCHSQGLDILSPCSQSQDEICRIPPVYGLTQIYKSSKRATPGPTHRVRQKVLSSGYVRDGSIEKLRNAFFFRGTEEESSDLENGRIKYEEDDSAKKDSLHSDLEVIEKELLREKAVENEFKLMMESTTTTKVPRRKYSKKLRRRRKKKNKSSTRKESTTTXTTTTMTTTPTTTPPPXTTTXASTTTTSKTTTTTNYHQVFREQVFGQIXEESHSDSQIRNIHPLEDLVTQEEVQKHSSLGRKHSSEGIPSSVLRPSKKVLGVSTKTWTIIGSLIGAITFIVICITLGLRKAYSVQTFKILDNRGSSVNNNNSGANANSHSIYGPPSMDTYVQSLVSSRTSSFHRSTESRLTSTSTIPISPNNSSPSSPNNRPS 439 MLDIWVLLQCLLLLCLSYCSEYSRASLLSLSAHGERAVDHSHQGNALTFPCPHRHYRKSGTCIPCTNCHSQGLDILSPCSQSQDEICRIPPVYGLTQIYKSSKRATPGPTHRVRQKVLSSGYVRDGSIEKLRNAFFFRGTEEESSDLENGRIKYEEDDSAKKDSLHSDLEVIEKELLREKAVENEFKLMMESTTTTKVPRRKYSKKLRRRRKKKNKSSTRKESTTTXTTTTMTTTPTTTPPPXTTTXASTTTTSKTTTTTNYHQVFREQVFGQIXEESHSDSQIRNIHPLEDLVTQEEVQKHSSLGRKHSSEGIPSSVLRPSKKVLGVSTKTWTIIGSLIGAITFIVICITLGLRKAYSVQTFKILDNRGSSVNNNNSGANANSHSIYGPPSMDTYVQSLVSSRTSSFHRSTESRLTSTSTIPISPNNSSPSSPNNRPS Sbjct: 1 MLDIWVLLQCLLLLCLSYCSEYSRASLLSLSAHGERAVDHSHQGNALTFPCPHRHYRKSGTCIPCTNCHSQGLDILSPCSQSQDEICRIPPVYGLTQIYKSSKRATPGPTHRVRQKVLSSGYVRDGSIEKLRNAFFFRGTEEESSDLENGRIKYEEDDSAKKDSLHSDLEVIEKELLREKAVENEFKLMMESTTTTKVPRRKYSKKLRRRRKKKNKSSTRKESTTTXTTTTMTTTPTTTPPPXTTTXASTTTTSKTTTTTNYHQVFREQVFGQIXEESHSDSQIRNIHPLEDLVTQEEVQKHSSLGRKHSSEGIPSSVLRPSKKVLGVSTKTWTIIGSLIGAITFIVICITLGLRKAYSVQTFKILDNRGSSVNNNNSGANANSHSIYGPPSMDTYVQSLVSSRTSSFHRSTESRLTSTSTIPISPNNSSPSSPNNRPS 439
BLAST of EMLSAG00000003888 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold408_size180710-snap-gene-0.36 (protein:Tk05208 transcript:maker-scaffold408_size180710-snap-gene-0.36-mRNA-1 annotation:"piwi-like rna-mediated gene silencing 2 isoform x1") HSP 1 Score: 68.1662 bits (165), Expect = 1.077e-12 Identity = 101/389 (25.96%), Postives = 159/389 (40.87%), Query Frame = 0 Query: 65 CTNCHSQGLDILSPCSQSQDEICRIPPVYGLTQIYKSSKRATPGPTHRVRQKVLSSGYVRDGSIEKLRNAFFFRGTEEESSDLEN------GRIKYEED----DSAKKDSLHSDLEVIEKELLREKAVENEFKLMMESTTTTKVPRRKYSKKLRRRRKKKNKSSTRKESTTTXTTTTMTTTPTTTP------PPXTTTXASTTTTSKTTTTTNYH------QVFREQVFGQIXEESHSDSQIRNIHPLEDLVTQEEVQKHSSLGRKHSSEGIPSSVLRPSKKVLGVSTKTWTI-IGSLIGAITFIVICITLG----LRKAYSV--QTFKILDNRGSSVNNNNSGANAN-SHSIYGPPSMDTYVQSLVSSRTSSFHRSTESRLTSTSTIP 423 C+NC G D + PCS D IC S+ PT V++K+ ++ + + +LR + E DLE+ GRIKY ED D + + LHSDL++IE+EL E +LM + +++ K++ + R ++ + TT T P +P T ++ + N H VFG I +E + + R L+ HS L R S E S +P S + I + I A+ ++IC+ + K +++ Q FK+LDNRGSS G +A+ +H++ + SS SS RST+SRLTS S++P Sbjct: 2 CSNC--SGTDPIVPCSNYADAIC--------------SQGLPKSPTELVKEKIQNASKRKFEFMRELREQVNI--SPRERHDLEDQEPSVLGRIKYSEDTSNPDLSPRGDLHSDLQIIERELFLED------ELMKQQASSSSSSPPKWTTEDPRFSTEETITQIIYGIRTTTPQTPEHLRPAGSPLFLGKKRFFATMHPDAEQSTHHESEDNLHGKATSPSSSTVSVFGAIVQEPNEGALKRQTADEFGLI-------HSLLFRDSSQE---QSGSKPDASSPSSSPRGAAISLQHGIIALGLLMICVLSAGVALIYKKWNIMQQRFKVLDNRGSSGPGVPLGGSASLNHTL------------MSSSHNSSLRRSTDSRLTSQSSVP 344 The following BLAST results are available for this feature:
BLAST of EMLSAG00000003888 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000003888 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 2
BLAST of EMLSAG00000003888 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000003888 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000003888 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000003888 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000003888 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s210:267461..269018- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000003888-686654 ID=EMLSAG00000003888-686654|Name=EMLSAG00000003888|organism=Lepeophtheirus salmonis|type=gene|length=1558bp|location=Sequence derived from alignment at LSalAtl2s210:267461..269018- (Lepeophtheirus salmonis)back to top Add to Basket
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