EMLSAG00000003888, EMLSAG00000003888-686654 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000003888
Unique NameEMLSAG00000003888-686654
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000003888 vs. C. finmarchicus
Match: gi|592872641|gb|GAXK01084921.1| (TSA: Calanus finmarchicus comp6464362_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 2.956e-1
Identity = 14/45 (31.11%), Postives = 20/45 (44.44%), Query Frame = 0
Query:   45 NALTFPCPHRHYRKSGTCIPCTNC---HSQGLDILSPCSQSQDEI 86
            N     CP  HYR  G C+ C  C   +  G   ++ CS + D +
Sbjct:    1 NNTCIQCPSGHYRSGGNCLECKTCDGGNKGGRRTVTACSATADTV 135          
BLAST of EMLSAG00000003888 vs. C. finmarchicus
Match: gi|592836572|gb|GAXK01120972.1| (TSA: Calanus finmarchicus comp1464328_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 3.034e+0
Identity = 13/30 (43.33%), Postives = 15/30 (50.00%), Query Frame = 0
Query:   58 KSGTCIPCTNCHSQGLDILSPCSQSQDEIC 87
            K  TC PCT C+  GL    PC   +D  C
Sbjct:  346 KKETCSPCTRCNQPGLVTFIPCGYFRDTRC 435          
BLAST of EMLSAG00000003888 vs. L. salmonis peptides
Match: EMLSAP00000003888 (pep:novel supercontig:LSalAtl2s:LSalAtl2s210:267461:269018:-1 gene:EMLSAG00000003888 transcript:EMLSAT00000003888 description:"maker-LSalAtl2s210-snap-gene-2.26")

HSP 1 Score: 890.182 bits (2299), Expect = 0.000e+0
Identity = 439/439 (100.00%), Postives = 439/439 (100.00%), Query Frame = 0
Query:    1 MLDIWVLLQCLLLLCLSYCSEYSRASLLSLSAHGERAVDHSHQGNALTFPCPHRHYRKSGTCIPCTNCHSQGLDILSPCSQSQDEICRIPPVYGLTQIYKSSKRATPGPTHRVRQKVLSSGYVRDGSIEKLRNAFFFRGTEEESSDLENGRIKYEEDDSAKKDSLHSDLEVIEKELLREKAVENEFKLMMESTTTTKVPRRKYSKKLRRRRKKKNKSSTRKESTTTXTTTTMTTTPTTTPPPXTTTXASTTTTSKTTTTTNYHQVFREQVFGQIXEESHSDSQIRNIHPLEDLVTQEEVQKHSSLGRKHSSEGIPSSVLRPSKKVLGVSTKTWTIIGSLIGAITFIVICITLGLRKAYSVQTFKILDNRGSSVNNNNSGANANSHSIYGPPSMDTYVQSLVSSRTSSFHRSTESRLTSTSTIPISPNNSSPSSPNNRPS 439
            MLDIWVLLQCLLLLCLSYCSEYSRASLLSLSAHGERAVDHSHQGNALTFPCPHRHYRKSGTCIPCTNCHSQGLDILSPCSQSQDEICRIPPVYGLTQIYKSSKRATPGPTHRVRQKVLSSGYVRDGSIEKLRNAFFFRGTEEESSDLENGRIKYEEDDSAKKDSLHSDLEVIEKELLREKAVENEFKLMMESTTTTKVPRRKYSKKLRRRRKKKNKSSTRKESTTTXTTTTMTTTPTTTPPPXTTTXASTTTTSKTTTTTNYHQVFREQVFGQIXEESHSDSQIRNIHPLEDLVTQEEVQKHSSLGRKHSSEGIPSSVLRPSKKVLGVSTKTWTIIGSLIGAITFIVICITLGLRKAYSVQTFKILDNRGSSVNNNNSGANANSHSIYGPPSMDTYVQSLVSSRTSSFHRSTESRLTSTSTIPISPNNSSPSSPNNRPS
Sbjct:    1 MLDIWVLLQCLLLLCLSYCSEYSRASLLSLSAHGERAVDHSHQGNALTFPCPHRHYRKSGTCIPCTNCHSQGLDILSPCSQSQDEICRIPPVYGLTQIYKSSKRATPGPTHRVRQKVLSSGYVRDGSIEKLRNAFFFRGTEEESSDLENGRIKYEEDDSAKKDSLHSDLEVIEKELLREKAVENEFKLMMESTTTTKVPRRKYSKKLRRRRKKKNKSSTRKESTTTXTTTTMTTTPTTTPPPXTTTXASTTTTSKTTTTTNYHQVFREQVFGQIXEESHSDSQIRNIHPLEDLVTQEEVQKHSSLGRKHSSEGIPSSVLRPSKKVLGVSTKTWTIIGSLIGAITFIVICITLGLRKAYSVQTFKILDNRGSSVNNNNSGANANSHSIYGPPSMDTYVQSLVSSRTSSFHRSTESRLTSTSTIPISPNNSSPSSPNNRPS 439          
BLAST of EMLSAG00000003888 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold408_size180710-snap-gene-0.36 (protein:Tk05208 transcript:maker-scaffold408_size180710-snap-gene-0.36-mRNA-1 annotation:"piwi-like rna-mediated gene silencing 2 isoform x1")

HSP 1 Score: 68.1662 bits (165), Expect = 1.077e-12
Identity = 101/389 (25.96%), Postives = 159/389 (40.87%), Query Frame = 0
Query:   65 CTNCHSQGLDILSPCSQSQDEICRIPPVYGLTQIYKSSKRATPGPTHRVRQKVLSSGYVRDGSIEKLRNAFFFRGTEEESSDLEN------GRIKYEED----DSAKKDSLHSDLEVIEKELLREKAVENEFKLMMESTTTTKVPRRKYSKKLRRRRKKKNKSSTRKESTTTXTTTTMTTTPTTTP------PPXTTTXASTTTTSKTTTTTNYH------QVFREQVFGQIXEESHSDSQIRNIHPLEDLVTQEEVQKHSSLGRKHSSEGIPSSVLRPSKKVLGVSTKTWTI-IGSLIGAITFIVICITLG----LRKAYSV--QTFKILDNRGSSVNNNNSGANAN-SHSIYGPPSMDTYVQSLVSSRTSSFHRSTESRLTSTSTIP 423
            C+NC   G D + PCS   D IC              S+     PT  V++K+ ++   +   + +LR       +  E  DLE+      GRIKY ED    D + +  LHSDL++IE+EL  E       +LM +  +++     K++ +  R   ++  +       TT   T     P  +P          T       ++   +  N H            VFG I +E +  +  R       L+       HS L R  S E    S  +P       S +   I +   I A+  ++IC+       + K +++  Q FK+LDNRGSS      G +A+ +H++            + SS  SS  RST+SRLTS S++P
Sbjct:    2 CSNC--SGTDPIVPCSNYADAIC--------------SQGLPKSPTELVKEKIQNASKRKFEFMRELREQVNI--SPRERHDLEDQEPSVLGRIKYSEDTSNPDLSPRGDLHSDLQIIERELFLED------ELMKQQASSSSSSPPKWTTEDPRFSTEETITQIIYGIRTTTPQTPEHLRPAGSPLFLGKKRFFATMHPDAEQSTHHESEDNLHGKATSPSSSTVSVFGAIVQEPNEGALKRQTADEFGLI-------HSLLFRDSSQE---QSGSKPDASSPSSSPRGAAISLQHGIIALGLLMICVLSAGVALIYKKWNIMQQRFKVLDNRGSSGPGVPLGGSASLNHTL------------MSSSHNSSLRRSTDSRLTSQSSVP 344          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000003888 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003888 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592872641|gb|GAXK01084921.1|2.956e-131.11TSA: Calanus finmarchicus comp6464362_c0_seq1 tran... [more]
gi|592836572|gb|GAXK01120972.1|3.034e+043.33TSA: Calanus finmarchicus comp1464328_c0_seq1 tran... [more]
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BLAST of EMLSAG00000003888 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000038880.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s210:26746... [more]
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BLAST of EMLSAG00000003888 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003888 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003888 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000003888 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold408_size180710-snap-gene-0.361.077e-1225.96protein:Tk05208 transcript:maker-scaffold408_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s210supercontigLSalAtl2s210:267461..269018 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s210-snap-gene-2.26
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000003888 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000003888EMLSAT00000003888-699735Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s210:267461..269018-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000003888-686654 ID=EMLSAG00000003888-686654|Name=EMLSAG00000003888|organism=Lepeophtheirus salmonis|type=gene|length=1558bp|location=Sequence derived from alignment at LSalAtl2s210:267461..269018- (Lepeophtheirus salmonis)
ATGTTAGATATTTGGGTGCTACTCCAGTGTTTGTTATTGTTATGTTTGTC CTATTGTTCCGAGTATTCGAGAGCATCCCTCCTATCCCTTTCCGCACATG GAGAACGTGCCGTGGATCATAGTCATCAAGGGAATGCGCTAACGTTTCCA TGCCCACATCGGCATTATCGCAAATCCGGGACTTGCATCCCATGCACAAA TTGTCACTCACAAGGTAACAATCAAACAAAAGTGAAAAAAGGGATACACG TGGCTCACCAGGCTCATTTTAGGTTTAGACATACTGTCCCCTTGCTCTCA GAGTCAAGACGAAATCTGTCGAATTCCTCCTGTCTACGGCTTGACACAAA TTTACAAGTCGTCCAAGCGTGCCACTCCGGGTCCCACACACCGTGTTCGG CAAAAAGTATTGAGCAGCGGATATGTTCGAGATGGGAGTATTGAAAAGTT GAGAAATGCTTTCTTTTTTCGAGGGACAGAAGAGGAATCATCAGATCTAG AGAATGGGAGAATCAAATATGAGGAGGATGACTCCGCGAAAAAGGATAGT TTGCACAGTGATTTAGAAGTAATTGAAAAGGAGCTTTTAAGGTACGGAGA CTCTTGCCATTCACGCCATACAAATACTCAAACGTATATATTTTACACAA TTTTGCAGAGAAAAAGCAGTAGAGAATGAGTTCAAATTAATGATGGAGTC CACGACGACAACAAAAGTACCTCGTCGTAAATACTCCAAGAAACTTCGCC GTCGACGTAAAAAGAAAAACAAGAGCTCAACGAGGAAAGAAAGTACAACA ACGYCGACCACAACGACTATGACGACAACACCAACAACAACTCCYCCTCC GMCAACCACTACAMCAGCCTCAACAACAACAACGTCTAAAACAACGACAA CTACAAATTACCATCAAGTATTCCGAGAGCAAGTCTTTGGTCAAATAGYG GAGGAATCTCATTCGGATTCACAAATAAGGAATATTCATCCATTAGAAGA TCTTGTTACTCAAGAAGAAGTACAAAAGCAGTGAGTTTCTGATACTTAGA TCCCTTGACATGTAAGAATAATATCACACATATTTTGTAGTTCATCGCTA GGTCGGAAACACTCCTCCGAGGGTATTCCTTCCTCCGTTCTTAGGCCGTC CAAAAAAGTATTGGGTGTATCTACCAAGACTTGGACTATTATTGGTTCCT TAATTGGTGCAATAACTTTTATTGTGATATGTATAACTTTAGGACTTCGA AAAGCGTACTCCGTACAAACCTTTAAAATCCTAGATAATCGAGGTGAGAA AGATCTTTTTATCTATCTACATAGACCTCCTAATTTAATATGATAGCAGG TTCCTCTGTGAACAATAATAATAGTGGAGCTAATGCAAACAGTCATTCAA TTTACGGTCCGCCTTCTATGGATACATACGTCCAGAGCCTTGTTTCCTCT AGAACATCCTCCTTCCATCGAAGTACAGAGTCGCGCCTCACTTCCACGTC TACTATACCTATTAGTCCAAACAATTCGTCTCCATCATCTCCAAACAATA GACCATCA
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