EMLSAG00000004279, EMLSAG00000004279-687045 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000004279
Unique NameEMLSAG00000004279-687045
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000004279 vs. C. finmarchicus
Match: gi|592768128|gb|GAXK01186440.1| (TSA: Calanus finmarchicus comp45755_c3_seq4 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 4.139e+0
Identity = 16/50 (32.00%), Postives = 25/50 (50.00%), Query Frame = 0 
Query:   38 VLPSIANVTLNSDNSTSGEEIPESVLTALGDEINFTNLTNNLDMKSRLER 87
            VL  +AN  + + +S    E+ ESV   +G  +     + + DM  RLER
Sbjct:  131 VLKMVANALIEALDSDESLEVIESVAEVVGSILKHVQSSVSCDMLGRLER 280
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BLAST of EMLSAG00000004279 vs. L. salmonis peptides
Match: EMLSAP00000004279 (pep:novel supercontig:LSalAtl2s:LSalAtl2s224:34021:39240:1 gene:EMLSAG00000004279 transcript:EMLSAT00000004279 description:"maker-LSalAtl2s224-augustus-gene-0.10")

HSP 1 Score: 229.565 bits (584), Expect = 1.902e-78
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 
Query:    1 MTANITANLENSTSGSKIYYLKGNTTSSSDNSISGSGVLPSIANVTLNSDNSTSGEEIPESVLTALGDEINFTNLTNNLDMKSRLERFKILQEYYLSDDFMRLRYLANNEYGERTI 116
            MTANITANLENSTSGSKIYYLKGNTTSSSDNSISGSGVLPSIANVTLNSDNSTSGEEIPESVLTALGDEINFTNLTNNLDMKSRLERFKILQEYYLSDDFMRLRYLANNEYGERTI
Sbjct:    1 MTANITANLENSTSGSKIYYLKGNTTSSSDNSISGSGVLPSIANVTLNSDNSTSGEEIPESVLTALGDEINFTNLTNNLDMKSRLERFKILQEYYLSDDFMRLRYLANNEYGERTI 116
The following BLAST results are available for this feature:
BLAST of EMLSAG00000004279 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004279 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592768128|gb|GAXK01186440.1|4.139e+032.00TSA: Calanus finmarchicus comp45755_c3_seq4 transc... [more]
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BLAST of EMLSAG00000004279 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000042791.902e-78100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s224:34021... [more]
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BLAST of EMLSAG00000004279 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004279 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004279 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000004279 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s224supercontigLSalAtl2s224:34021..39240 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s224-augustus-gene-0.10
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000004279 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000004279EMLSAT00000004279-700126Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s224:34021..39240+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000004279-687045 ID=EMLSAG00000004279-687045|Name=EMLSAG00000004279|organism=Lepeophtheirus salmonis|type=gene|length=5220bp|location=Sequence derived from alignment at LSalAtl2s224:34021..39240+ (Lepeophtheirus salmonis)
ATAATTCAACTTCAGGATCTGGAATATCTCGTGAGTGTCAGAAATTTAAA
CTCAATAAATTATTAAAATTAAATTAGAACATTTATAGTTCCATTTTCAG
CTCCCACAACCAACACAAATTATAGTAAGCAAAGGCAATGGAAAGCAGAT
ATAAAAAAATCGATATCATTATTAATTCCTTCCTTTAAAATATGGAACCT
TATTTAAATGTGTCTGTGATTGATAAAACGGACGTTGGAGTACATATAAA
AAAACAAAAAAAACAAAACACACTTCTTACAATATTAGACATTTATTTTT
TTAAATTGATTAGAGGTTGTTGAAATACGTATTCTGAGTATGGGAAAATT
TTGAAAAGCTGTTTGTGTTCTTTTTCATTTGAATTAAATTGAAATATAAC
NAATTGATTAGAGGTTGTTGAAATACGTATTCTGAGTATGGGAAAATTTT
GAAAAGCTGTTTGTGTTCTTTTTCATTTGAATTAAATTSAAATATAACTT
TTTTAATTAAAAAAATAAATATATATATTTAGAGAATGGAACAAAAGGAT
CGGAAATATTTCGTGAGTCACAGAAGTTAAATCTCAATAATTGGCAAGTA
TTGTGATTTGACTTAAATCTTTGCATTTTCAGCTATGACAGCAAACATCA
CAGCAAATTTGGGTAAGTAAATAAGGACAAACAGTAGAAAACAGTTTTTT
TAATTGATAACATCGTCAATACATGTTATAACTTTTTTTAGATTATTCTG
AAAATTAGTTAAATAATATCGACTCAATATTATTAGCATAACTTTTGATA
ATTCTATAATTCTTTTTTANATATTCTTATTTCAATGAAATAACGAATTT
TTAAATAAATATTTATGCTTCTTTGATTTTTTTTCCTTTGTATTGAATTT
TATTAAATAGTAAGATGCTATGAAAACATATTATAAGTTTATCTCATGTT
TGCCAAAATATTATAGTCAGAGTGTGCTCTTTTTCAATTCAGTTTACCTT
TTTTCAACTTTTTCCTTTCCATTATATTGTAGAGAATTCAACTTCAGGAT
CCAAAATATATTGTAAGTATTACAAATTAAGATTCAATAAATTGTAATTG
GATTTCATTCTTTACATTTCCAGATTTAAAAGGAAACACTACATCCAGTT
CTGGTAAGTCAGGATAATACAAATCCTTTTTTCTTTTTTTTTTAATTCAT
ACTTATCAATTAAATAATTTCTTTTAAAATAGCCTGAAAAGAATTAAAAT
AGTGTAGATTATTAAAAGAACAACTTCTTAGCTAAATGAAACTATCATTT
TTAATTAATATGAGGCCTTTTGAAATAATAGCAAAACTTTGATAGCCTGA
GCTTTTTATTTGTTTAATTGAGTTATATAGAAATTCAACTTTTTTCTTTC
CTAAAAAATTCTGAAGAATTTGACTTTAGGATAAGGAATACCTCGTGAGT
GTTACAAATTATTACTTTATAAACGACTGATATTGTAGCTTAATATCAAT
TATTGTATTTTAATCAGAGAGCAAACGCTACATCCAATTCAAGTAAGCAG
AATGCAGTTTTAAAAAAATGATCACTGTTAATTTTTACCCATAACATGAT
ACTTTAAAAAAAAATGTTTTTGAAAATATTAAAAATGCTGATATAACTTT
TGAGTATTTCTTTTTCTATTTTGATAAGAGTAAATTATTTCAAAGGCTAT
CTAAAAATGTATGAATGATCACATCAATTACAAAATTCTAAATGGCTAAT
GAACTTTTATTTTCTCCCACAAAATTTTAGATAATTCAATATCAGGTTCC
GGAGTACTTCGTGAGTGCTAGATATTATGATTCTATAAACTATCAAACTT
GTTTGATTTTTTTTTTTTTTTTTCATTTTCAGCGTCAATAGCAAATGTTA
CATTAAATTCTGGTAAGTAAGAAGTGCCCTACATAAATGGATTATTGCTT
GCTGGGTCAGTGTTAGTTTGACCTTTTTTTTCCTTTATGAAAAGGAGTGA
AAATTTCATTTTAAAAATATTTGTTTCTGCTAGTTTCTCTCTTTTGTCCA
AAAATATAAATATTTTCAAAAAAAAATTGTAACATTCTCGATAATGTCTT
AAATTTATTGATTCCCTAATTACTTTTTTATTTCCTTTGAATAATAGATA
ACTCAACTTCAGGGGAAGAAATACCTGGTGAGTATAAATTGATTTCCATC
TTTGCATTTTCAGCTTCAATAACAATCCCACTTCAAAAACTGGTAAAGGT
ATTCTAATTAAACTTCAGTCAAACATAAAAATCAAACGAAATGTCATTTA
CTTATAATTATTGAAAAATAATTTTGGAACTCAATGTATTATTGAACATG
GAAATTTGATTGTTTGCATGTTTTGCTTATGAAATTCGAACAGGAGTTTA
TTTTAGTGGGTGTATACATAATAATTATGTACACTTACAAGGTGGTCGAA
AATTACATTCTCATTCATTTCAATGTCATTAAATTAAGAGTATTGTCTGT
AGGGGTTTTTCTTATACAAGTCTGAAATATTGCAACAGTGAGATGGGACT
CAAACTACATATGACTTTTTTGGACATTCTGAACGGTCCTGTCCTAAATG
TTATGGAAGGAGGATAACAGCTTTAAAAATAAAATACACTCTTCAGGTTA
CCAATACCAAAAAAAAATCACATATTAAAAATGCTAAGGATTTACAACCC
TAATTATATCCTTCTTGTTTCTACATACCTATATGAGCTCAATAGCTTTT
CATTGGAGTGGTAAAACGGATATACTATCATAACTTTATTTTTAAACGCT
GAATGAGCTCATTTTTCCATCTCTGCTAATAAGATTCCCATTAGATACAC
CAACATTCTTAACTGGATTGGATGAAGCAAATTTCTTCTACTTGTATACG
GGATTTTTTTTTGATTACGACTTAATTTAGGATCGATATCGGAGTAAATC
CTGTCTATATCATTGCTAGATACAATGAGTGGATTGCGTGAATTTACTTA
ATCCCAAAGCTGCTCGCAGCTAATTTGATGAAACATCATGACAGCTAAGC
TGCTCTCCTCCCAAACATTCTTCAAACTTAACATTCAGTTTCTTTTTTAA
ATTGTTATACCGGTGTTTCATATTATTTGAATCTTTGCCTTTGAGTATAG
AGTGACTACGAATAGGACGCAAAATCAGTCCAATGAAATATTCTTTGATA
AATGACATCATCATAGATATTTACCATTGTCGTCATCATTTAATTAGTGT
AATTAGGCATACATTAAGAAAAATTGGGAAATATTACAGTATTTTAAAGA
AACTAAATTAACTAATTAAACTGAGATAATTTGCAATAATAGTAGTTGAA
ATGATGTATTCTAGAGGTGCTTTCAAATTTGGGAAGTTTTTAAAGGACCT
TTAACTGGGACGAGAGGAGGCCAGACTGGACGGGACTGRTTTTAAATCTT
ATATTAAGACGTTGTGGGTACTCCCTGTTTGTCAATTCTAGGACAATATT
AAACCTGCAAAAAAGTATAAATTCAAACCATTATTATCTAAGTGATTGAT
TTTTTTTAATGGGAATCTATTTACGGAACAACCTGTATAGTTTAAACGTA
ATGCCTACGTTTGTTTATTGTTTAAGTCAGGATTAAAAGTAATAATTAAG
AAGAGGTACGGTTTTTTTAATTATTAATAACTAGCAGAGGATGCTCACGT
TGTAGGACCGAATAGAGGAGAATAAAAACAAAGAATGAAGGTAAAATAAA
ATAGACAGATGTAGAAAGAAATAGAGGGAAGAGGTAATAAGAAGGAGAGA
GATATAAAAAGAACATTTTATTTCGGTTAAAAACAGTAATAACTGAAGAG
CCTCAAAAAATATCATAGGAACATGCTTGGTTATTTTACTTACTAAATTT
TAAACTTGTCTCTTGGACCGTTTTAGATTCCATGTCTGATATATATAAGA
TGAATTTTTTGTTATATTTTACAGAATCTGTTCTGACTGCTCTTGGAGAT
GAAATTAATTTTACAAACCTTACGAATAATCTGGACATGTAAGCATATGT
TTTTATCTATTTTTTTTTCTTGTAATTTTATCTAGGTAATATGACTTTTA
TTCAAAAGGAAATCTAGGCTAGAGCGATTCAAAATTCTTCAAGAATATTA
TTTATCCGATGATTTTATGAGGTATTTATTATTCTTTTTTGAATCAAAAC
GTTATTGAATTATCATTTTTTTTTTTGTAACTAACTATAAAAATATGATA
TATTTAATGGTCACAACTAATATTTTGTTATTTTGCTGATATAGACTGAG
ATATTTAGCTAATAATGAGTATGGAGAGAGAACAATTTGGTAATGCCATT
TTCTTGTAAATGATGATTTGTTCAAGTTAAATGTGACATACATCACTTTT
TTTTTATTTGAATTTTCTTTTGAGTGGGTTACTCAAGCTTCTATAAATCA
CAAATCAAAAGCTGTTTAGCTCAAATAGGTACTAGCAAAAATTTTATAAT
TAGGGTTGTAAATTCTAAGCTTTTTTTGTTTTTTTGTTTTTTTTTGACAA
CCTGAAAGGTGAATTTTATTTTTGAAAGCTACTATTATTATTGTTTAATT
ATTTAGGAAAGAATATTATAGTATATAACTCCTTATATAATTGAGGATCA
ACATCGGAGTAATTCCTTCTTTCACTCCTACTTGAAGTAATAAAATGCAC
TAACAGCTACGTTGCTCCTCCTTCTAATGGTTAAGGTGATCATATTAATT
TTCAGGGTTTTTTTATATACCCAAATGCATATAATTTACAACCCTAGATT
TAATATTTTAGTAATTTAATTTTGTACTACGGATATTTATAATGTTTCTC
GCAAAAACGTGTATTCTTTCAAAATAATTAATCCTTTCAATGAAAAATAT
CACATAATTTCTCTCAGTTACTTAAACAAACTTTAAGTGTAAAAGCATGT
AGCTAAATCTTTGAGCAATATTGATTCTTTTAAGACCTTCTTAAAAGAAA
ATTCAATTTTTTTAATGACACACTCTAATACATATGTATTTCTAGAAAGA
AAAACTTAAGAATTCCATAGAAGATCGAACTATACGGAACGATAATATAT
TAATTTATTCTTATTGAATGTAACTTTCCTTACAATGTTATTATTTTAAC
CAATATAAACATTCACATTTACCTTCTTTGTAATTTTACTAATACTAAAC
ACTGAACCATTACTCAGTCA
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