EMLSAG00000005837, EMLSAG00000005837-688603 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000005837
Unique NameEMLSAG00000005837-688603
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
K F96 UN18_g1340 female
  1. Adult
No visible phenotype
no visible phenotype
03.04.2013 - 14:28
13.05.2013 - 00:00
Homology
BLAST of EMLSAG00000005837 vs. C. finmarchicus
Match: gi|592936520|gb|GAXK01022033.1| (TSA: Calanus finmarchicus comp337359_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 53.1434 bits (126), Expect = 6.345e-7
Identity = 43/136 (31.62%), Postives = 63/136 (46.32%), Query Frame = 0
Query:  176 FKTNPLLYYGYYAQLIQNIRRSSEEEEHXXXXXX------------------------XXXXXXTLGDSTPTPFGAYTSPEARQKIKST----------NEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQ 277
             + NP+LYY YYAQ++  ++   +  E                                ++N  ++ DS P       SP  +Q  +S           ++EPR KRAPRALTGR+VR GT ASPR L +LR+K++
Sbjct:  934 LQYNPILYYSYYAQMLSALQTQQKLLELNTTPPTVPSTNNNNNNNIKDLLSPLRLGGLASLNKESMQDSRPM-----FSPHYQQHSQSPASTMSPGCYKDDEPR-KRAPRALTGRYVRTGTAASPRVLQILRKKVE 1323          
BLAST of EMLSAG00000005837 vs. L. salmonis peptides
Match: EMLSAP00000005837 (pep:novel supercontig:LSalAtl2s:LSalAtl2s315:56674:59396:1 gene:EMLSAG00000005837 transcript:EMLSAT00000005837 description:"maker-LSalAtl2s315-snap-gene-0.7")

HSP 1 Score: 608.601 bits (1568), Expect = 0.000e+0
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0
Query:    1 MQDRATENSGVVVDKGKEPFLMSATGLAGSGASAQNLGKRIVKRRRSEDSGGXSSDPRSISPMDLTSKGHSSSSSGQHSPQDLSSGGGGRIHHEQKEEKVKRRRLDDILHRKFPSSSPTTSNAAAHLHHLHHTTPLSSRKRKHPESPCILSEEEEDPSVRAGRFLQLAALMNSDIFKTNPLLYYGYYAQLIQNIRRSSEEEEHKILNKKVNINNNTLGDSTPTPFGAYTSPEARQKIKSTNEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQERLRLREEAEACRKPPKKSKKSH 300
            MQDRATENSGVVVDKGKEPFLMSATGLAGSGASAQNLGKRIVKRRRSEDSGGXSSDPRSISPMDLTSKGHSSSSSGQHSPQDLSSGGGGRIHHEQKEEKVKRRRLDDILHRKFPSSSPTTSNAAAHLHHLHHTTPLSSRKRKHPESPCILSEEEEDPSVRAGRFLQLAALMNSDIFKTNPLLYYGYYAQLIQNIRRSSEEEEHKILNKKVNINNNTLGDSTPTPFGAYTSPEARQKIKSTNEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQERLRLREEAEACRKPPKKSKKSH
Sbjct:    1 MQDRATENSGVVVDKGKEPFLMSATGLAGSGASAQNLGKRIVKRRRSEDSGGXSSDPRSISPMDLTSKGHSSSSSGQHSPQDLSSGGGGRIHHEQKEEKVKRRRLDDILHRKFPSSSPTTSNAAAHLHHLHHTTPLSSRKRKHPESPCILSEEEEDPSVRAGRFLQLAALMNSDIFKTNPLLYYGYYAQLIQNIRRSSEEEEHKILNKKVNINNNTLGDSTPTPFGAYTSPEARQKIKSTNEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQERLRLREEAEACRKPPKKSKKSH 300          
BLAST of EMLSAG00000005837 vs. Select Arthropod Genomes
Match: gb|EEC11111.1| (hypothetical protein IscW_ISCW019608 [Ixodes scapularis])

HSP 1 Score: 74.7146 bits (182), Expect = 4.224e-14
Identity = 47/115 (40.87%), Postives = 61/115 (53.04%), Query Frame = 0
Query:  180 PLLYYGYYAQLIQNIRRSSEEEEHKILNKKVN-------INNNTLGDSTPTPFGAYTSPEARQKIKS---TNEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQERLRLRE 284
            P   Y YY Q++Q +       EH++L + +        I    LG + P+P     S E   ++ S   T      KRAPRALTG+HV+ GTGASP TL  LRQKIQER R R+
Sbjct:  329 PFSIYAYYTQIMQRL------HEHELLKRHLEGIAVSAAIPAQALGAARPSPATGLDSVEDSDELASGLDTYNCSMRKRAPRALTGKHVKHGTGASPATLLTLRQKIQERQRARQ 437          
BLAST of EMLSAG00000005837 vs. Select Arthropod Genomes
Match: gb|KFM80470.1| (hypothetical protein X975_09057, partial [Stegodyphus mimosarum])

HSP 1 Score: 52.373 bits (124), Expect = 6.724e-7
Identity = 40/104 (38.46%), Postives = 52/104 (50.00%), Query Frame = 0
Query:  181 LLYYGYYAQLIQNIRRSSEEEEHKILNKKVNINNNTLGDSTPTPFGAYTSPEARQKIKSTNEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQERLRLRE 284
            L  Y YY QL+Q +R      EH     +++         +PTP       +A++K           R  RALTG+HVR GTGAS  TL  LRQKIQER + +E
Sbjct:  254 LHVYDYYQQLVQRLR------EHSSTTVRLH------PPISPTPADDDLPSDAQRK-----------RPCRALTGKHVRQGTGASISTLLTLRQKIQERQKAKE 334          
BLAST of EMLSAG00000005837 vs. nr
Match: gi|241652329|ref|XP_002410389.1| (hypothetical protein IscW_ISCW019608 [Ixodes scapularis] >gi|215501617|gb|EEC11111.1| hypothetical protein IscW_ISCW019608 [Ixodes scapularis])

HSP 1 Score: 74.7146 bits (182), Expect = 2.067e-11
Identity = 47/115 (40.87%), Postives = 61/115 (53.04%), Query Frame = 0
Query:  180 PLLYYGYYAQLIQNIRRSSEEEEHKILNKKVN-------INNNTLGDSTPTPFGAYTSPEARQKIKS---TNEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQERLRLRE 284
            P   Y YY Q++Q +       EH++L + +        I    LG + P+P     S E   ++ S   T      KRAPRALTG+HV+ GTGASP TL  LRQKIQER R R+
Sbjct:  329 PFSIYAYYTQIMQRL------HEHELLKRHLEGIAVSAAIPAQALGAARPSPATGLDSVEDSDELASGLDTYNCSMRKRAPRALTGKHVKHGTGASPATLLTLRQKIQERQRARQ 437          
BLAST of EMLSAG00000005837 vs. nr
Match: gi|1070703846|gb|JAT79213.1| (hypothetical protein IscWISCW, partial [Ornithodoros brasiliensis])

HSP 1 Score: 69.3218 bits (168), Expect = 6.884e-11
Identity = 45/105 (42.86%), Postives = 58/105 (55.24%), Query Frame = 0
Query:  180 PLLYYGYYAQLIQNIRRSSEEEEHKILNKKVNINNNTLGDSTPTPFGAYTSPEARQKIKSTNEEPRHKRAPRALTGRHVRPGTGASPRTLALLRQKIQERLRLRE 284
            P   Y YYAQL+Q +      ++H++L + +     T    TP+P      P+            R KRAPRALTG+HV+ GTGASP TL  LRQKIQER R +E
Sbjct:   34 PWSIYSYYAQLMQRM------QDHEVLKRHLQSGMPT----TPSPREVMDEPDEGVGTLDAFGGIR-KRAPRALTGKHVKQGTGASPATLLTLRQKIQERQRAKE 127          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000005837 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005837 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592936520|gb|GAXK01022033.1|6.345e-731.62TSA: Calanus finmarchicus comp337359_c0_seq1 trans... [more]
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BLAST of EMLSAG00000005837 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000058370.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s315:56674... [more]
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BLAST of EMLSAG00000005837 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005837 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 2
Match NameE-valueIdentityDescription
gb|EEC11111.1|4.224e-1440.87hypothetical protein IscW_ISCW019608 [Ixodes scapu... [more]
gb|KFM80470.1|6.724e-738.46hypothetical protein X975_09057, partial [Stegodyp... [more]
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BLAST of EMLSAG00000005837 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 2
Match NameE-valueIdentityDescription
gi|241652329|ref|XP_002410389.1|2.067e-1140.87hypothetical protein IscW_ISCW019608 [Ixodes scapu... [more]
gi|1070703846|gb|JAT79213.1|6.884e-1142.86hypothetical protein IscWISCW, partial [Ornithodor... [more]
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BLAST of EMLSAG00000005837 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s315supercontigLSalAtl2s315:56674..59396 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s315-snap-gene-0.7
Biotypeprotein_coding
EvidenceIEA
Notehypothetical protein IscW_ISCW019608 [Ixodes scapularis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000005837 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000005837EMLSAT00000005837-701684Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s315:56674..59396+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000005837-688603 ID=EMLSAG00000005837-688603|Name=EMLSAG00000005837|organism=Lepeophtheirus salmonis|type=gene|length=2723bp|location=Sequence derived from alignment at LSalAtl2s315:56674..59396+ (Lepeophtheirus salmonis)
CCCCATCATCCCAAGGAATTTAAAGAATTACTATTATTGTAAGTTTGTTC ATACATTTATATTTGTTCAAATCAAGCCATCACTACTTTTCCGTCATTTC CCATATTTTTATTTCCCTTTTTTATATTTATTTAAAAAAAATTAGTTTAG GATTTCAACAAGTTTCTTTTTTCTTTGACGTTACGTTTTTAATCGCATGC CTTTTCCCGGAAATTGGAATATATTTTGATATAATAACTAAATAAAAATA YATTTATAAATATATYGTAGATTATATTTCAAGATGTTCTATTACCCCTT TAATAAATAATTATAAAAGGATCTTGAAACTTAACTTACTAAGCAGTCAT GTTTTTTTTGTCTTTTTTTTTACCGGATATGAATGGTAATAAACATCACC CATGAATTTTTAAACTCTTTTCCTTTTTTGGGAGAGTTTAATGGTATTGG TTGCTTGGTTGGTTCTAGGGCGAAATTAATGTACTTTTTTTATTGTAGAA TAATTTGTTTGACATTAAAATATTTTAATTATTATTTTAATGTCTTTATT TTACATAATTTATTTTTATTTTGCAAATTCATTTCCTTTTAGTGAGTTGG TGACTTATTCTGCGATTTTTTACTCAAATATCCGATTATGTATATACTTT GTGTACAAGTAGCAATTTTGTACAAGTTGTAACTTGGATAAGTAGACTAC AAGTTACAATTACTAATTTCTCATAACGCCTTATTTAATTGCTACAACAT CATTCATGTAAATTACCCATGGTATTAATTGATCATATTATCTGGGCTGG CATTAGGCGACTGCAGTTGCACACTTTGTCTAGGCCTGGCACTTGATTGG AAAAATAAATTTAGAACATATTGTTTTTTAAAAGGAGTCATTTCAAGAGA ATGAGGAAAAAACCTTAGTAGTAATTTTATTATTATTCAAAAGTTATTAA TTAATATCCTTATCCCTACTGAAATTGGGATTTGGACCCCACGCCATCCG TTTTGTTTAGGGCACTGAAATAGCTGAGGTACACCCTGGCTATTATTTCA TTTTTATTGAATAAAATTAAGTATTGATTATATATTTATGTGGTAGTGGT CATTTGAAATTGAATATGTTTACATAATTACTTATTAATTTTCATTTAAA TATTCACAAATTCTACCTTTAATTTATGGACCATCTAAAAAATATTAAGT AATTATATTATCCTTATTATAAAGACTCTAAATTTTGCATTTAAAATTAT TGGTCTCATTTTTTTTGGTAATGGTAACTTCTGCATGACATATTTAATAT TTTATTTATAAGTAATGAACAATATGCATAATAAATAATAATCGTATCCA ATAGATCAACTGGACTTTGTTGTTTCTCCTTTTTCTTTTTCCTTTTTTGT TGCCTTATTATCAAACTTCTTAATGCTGATTTCCTTAGGAGATCAGTCGT AGTTCATTTATCGTATGGGTTGTGTCGAACTTTTCTTCATCAACAGTATA AATAAGTTCCCCTTCTGTTTAATTTATTTCCAGGTCCCCCTTCTACTTGA GTGTATTTTTTGAGGCTTGAATATATTATCATAATTCGTTATTAAATAAA GAAGCCAGCAAGATGCAGGACCGTGCGACAGAGAATTCGGGCGTCGTCGT CGATAAAGGAAAAGAGCCCTTCCTCATGAGCGCAACAGGTCTTGCCGGCA GTGGTGCGTCAGCGCAGAATCTAGGAAAAAGGATTGTTAAACGAAGAAGG AGTGAAGACAGTGGWGGGKCTTCATCTGATCCACGATCTATTTCCCCAAT GGATCTTACATCCAAAGGCCATTCCTCCTCTTCTTCTGGTCAACACTCAC CTCAGGACCTCTCGTCCGGCGGGGGCGGCCGCATACATCACGAACAAAAA GAAGAGAAAGTGAAGAGACGAAGATTGGATGACATCCTCCATAGGAAGTT CCCATCCTCTTCTCCCACGACCTCCAATGCAGCGGCACATCTACACCATC TTCATCATACTACTCCACTCAGTTCTCGCAAAAGAAAGCATCCTGAGTCT CCATGTATCCTGAGTGAAGAAGAAGAGGATCCATCCGTTCGTGCAGGGAG ATTTCTTCAACTTGCAGCACTCATGAATAGTGATATATTCAAAACGAATC CCCTACTTTACTATGGTTATTATGCTCAATTAATTCAAAATATTCGACGA TCCAGCGAGGAAGAGGAACATAAAATCCTTAACAAAAAAGTCAATATTAA CAACAATACTCTAGGAGACTCGACTCCAACTCCTTTTGGAGCATATACTT CACCAGAGGTGAGATCTTAACCATCGATCATTATATAATTATATGAATTA TGCTCAACAAATCATCTTTTATTCATTTCAGGCTCGACAAAAGATCAAGT CCACAAGTTTCAACCTCAGTTCTCTCCTCAGCMCCCCTTCAYCCCCCTCA YCCGCCACAAGTAGCCCAGTCACAAAYCGMCCTMCCGACATAACCCCTCC AYCAYCCTAYCCCGAMCCTGCATCAYCCCCAGCCTCTTCTCCAGATGAAG AACCACGACATAAAAGAGCCCCAAGAGCATTAACCGGAAGACATGTACGA CCTGGAACTGGAGCAAGTCCAAGAACACTTGCATTACTTCGTCAAAAGAT ACAAGAACGTCTACGACTACGAGAAGAGGCAGAGGCGTGTCGGAAGCCTC CTAAAAAGTCCAAGAAAAGTCAC
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