EMLSAG00000005923, EMLSAG00000005923-688689 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000005923
Unique NameEMLSAG00000005923-688689
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
L F95 UN17_g1274 female
  1. PreAdult
  2. Adult
-Missing-
no visible phenotype
17.04.2013 - 14:29
10.06.2013 - 00:00
Homology
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592789951|gb|GAXK01164617.1| (TSA: Calanus finmarchicus comp599346_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 6.907e-1
Identity = 11/30 (36.67%), Postives = 19/30 (63.33%), Query Frame = 0
Query:   29 EEGQQRFDCSLCHSRYKHHSSLFRHFKSAH 58
            +   + F C+LC  R+KH++SL +H  + H
Sbjct:  227 DSAAETFPCTLCDKRFKHNNSLSKHINAVH 316          
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592765327|gb|GAXK01189241.1| (TSA: Calanus finmarchicus comp856307_c0_seq4 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 7.569e-1
Identity = 12/37 (32.43%), Postives = 22/37 (59.46%), Query Frame = 0
Query:   37 CSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLK 73
            C  C  +    SSL  H ++AH+ ++++++  R KLK
Sbjct:  260 CDYCDKKLTSKSSLILHIRTAHNTDFDDKLGGRQKLK 370          
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592851986|gb|GAXK01105558.1| (TSA: Calanus finmarchicus comp185798_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 8.399e-1
Identity = 18/50 (36.00%), Postives = 24/50 (48.00%), Query Frame = 0
Query:    9 LDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAH 58
             D K+ ES  L     V   E G Q +DCS C  +Y    +L+ H K+ H
Sbjct:  318 CDYKVKESRELKRHKDVKHTEGGGQTYDCSKCDKKYTRPQNLYVHIKAHH 467          
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592749480|gb|GAXK01204933.1| (TSA: Calanus finmarchicus comp364667_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 8.735e-1
Identity = 15/30 (50.00%), Postives = 17/30 (56.67%), Query Frame = 0
Query:   29 EEGQQRFDCSLCHSRYKHHSSLFRHFKSAH 58
            E G+QRF C LC   Y   SSL RH  + H
Sbjct:  551 EPGKQRFSCDLCGKAYADSSSLKRHINTNH 640          
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592765329|gb|GAXK01189239.1| (TSA: Calanus finmarchicus comp856307_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 8.751e-1
Identity = 12/37 (32.43%), Postives = 22/37 (59.46%), Query Frame = 0
Query:   37 CSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLK 73
            C  C  +    SSL  H ++AH+ ++++++  R KLK
Sbjct:  260 CDYCDKKLTSKSSLILHIRTAHNTDFDDKLGGRQKLK 370          
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592851987|gb|GAXK01105557.1| (TSA: Calanus finmarchicus comp185798_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 32.7278 bits (73), Expect = 9.502e-1
Identity = 18/50 (36.00%), Postives = 24/50 (48.00%), Query Frame = 0
Query:    9 LDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAH 58
             D K+ ES  L     V   E G Q +DCS C  +Y    +L+ H K+ H
Sbjct:  318 CDYKVKESRELKRHKDVKHTEGGGQTYDCSKCDKKYTRPQNLYVHIKAHH 467          
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592878412|gb|GAXK01079489.1| (TSA: Calanus finmarchicus comp2994506_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.016e+0
Identity = 23/89 (25.84%), Postives = 41/89 (46.07%), Query Frame = 0
Query:   25 VVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAK 113
            V T  +    F C  C  RYK+H +L RH +S H +  E  + +    + + + +I   + + R+    + L +  K+KE  + E   K
Sbjct:  256 VKTFHKDDCPFQCEDCGKRYKYHGALKRHRQSVHERTGENSIVISFGQQKQHNCSIC-SKVFKRKDLLNKHLVTHDKSKEKFSCEECGK 519          
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592803913|gb|GAXK01150655.1| (TSA: Calanus finmarchicus comp155055_c0_seq5 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 1.060e+0
Identity = 14/35 (40.00%), Postives = 20/35 (57.14%), Query Frame = 0
Query:   31 GQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEER 65
            G++ F C LC+ RY    SL RH +  H   ++ER
Sbjct:   70 GEKPFSCQLCNKRYPIVKSLKRHLRLNHGDSFQER 174          
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592787391|gb|GAXK01167177.1| (TSA: Calanus finmarchicus comp1193_c26_seq551 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 1.101e+0
Identity = 15/53 (28.30%), Postives = 26/53 (49.06%), Query Frame = 0
Query:    6 IEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAH 58
             + ++   N   ++    I   +E+   +F CS+CH  +K  S+  RH KS H
Sbjct:  266 FQSINNGFNGCLSILGFNISEVVEDHVNKFVCSICHVEFKDKSNCRRHVKSVH 424          
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592941547|gb|GAXK01017006.1| (TSA: Calanus finmarchicus comp72331_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 1.393e+0
Identity = 10/28 (35.71%), Postives = 20/28 (71.43%), Query Frame = 0
Query:   31 GQQRFDCSLCHSRYKHHSSLFRHFKSAH 58
            G++ F C LC +R++  + L++HF+ +H
Sbjct: 3173 GERPFSCVLCLNRFRQKAHLYKHFRCSH 3256          
BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Match: EMLSAP00000005923 (pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246:791300:-1 gene:EMLSAG00000005923 transcript:EMLSAT00000005923 description:"maker-LSalAtl2s31-snap-gene-8.28")

HSP 1 Score: 452.21 bits (1162), Expect = 9.762e-163
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
Query:    1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKSPAKSQKKNIIHIKIQPKVEEPHISSLEEDTELLMKKLGESTNEQIIPNGTIQNITPSVVLIPIKKGELRVHSLRRINHVALKTMT 224
            MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKSPAKSQKKNIIHIKIQPKVEEPHISSLEEDTELLMKKLGESTNEQIIPNGTIQNITPSVVLIPIKKGELRVHSLRRINHVALKTMT
Sbjct:    1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKSPAKSQKKNIIHIKIQPKVEEPHISSLEEDTELLMKKLGESTNEQIIPNGTIQNITPSVVLIPIKKGELRVHSLRRINHVALKTMT 224          
BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Match: EMLSAP00000011618 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392:84519:1 gene:EMLSAG00000011618 transcript:EMLSAT00000011618 description:"augustus_masked-LSalAtl2s802-processed-gene-0.2")

HSP 1 Score: 121.324 bits (303), Expect = 7.646e-33
Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 0
Query:    6 IEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKS 139
            + + D KI    +L+S+MIV  L+ G  RFDCS+C SRYKHH SLFRHFK AH ++YE++VALR  LKAER+     G PY+RR+N KR  +  K NKEN +          PT+ ++  + V +  ++  P S
Sbjct:    7 VVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVS 140          
BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Match: EMLSAP00000011617 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552:64646:-1 gene:EMLSAG00000011617 transcript:EMLSAT00000011617 description:"maker-LSalAtl2s802-snap-gene-0.20")

HSP 1 Score: 101.293 bits (251), Expect = 8.496e-26
Identity = 56/138 (40.58%), Postives = 91/138 (65.94%), Query Frame = 0
Query:    1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKEN--------TTSESVAKEAESPTKSTSKTSTVNV 130
            M KK + +LD K+ E + L+S+M+++ L++G+ RFDC++C  RYKHH SLFRHF+SAH ++Y + ++LR ++++ER AA   G  Y RR+N KR +R ++ NKEN        TT + ++ E  S   +  + +T+ V
Sbjct:    1 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQV 138          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000005923 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005923 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592789951|gb|GAXK01164617.1|6.907e-136.67TSA: Calanus finmarchicus comp599346_c0_seq1 trans... [more]
gi|592765327|gb|GAXK01189241.1|7.569e-132.43TSA: Calanus finmarchicus comp856307_c0_seq4 trans... [more]
gi|592851986|gb|GAXK01105558.1|8.399e-136.00TSA: Calanus finmarchicus comp185798_c2_seq2 trans... [more]
gi|592749480|gb|GAXK01204933.1|8.735e-150.00TSA: Calanus finmarchicus comp364667_c0_seq3 trans... [more]
gi|592765329|gb|GAXK01189239.1|8.751e-132.43TSA: Calanus finmarchicus comp856307_c0_seq2 trans... [more]
gi|592851987|gb|GAXK01105557.1|9.502e-136.00TSA: Calanus finmarchicus comp185798_c2_seq1 trans... [more]
gi|592878412|gb|GAXK01079489.1|1.016e+025.84TSA: Calanus finmarchicus comp2994506_c0_seq1 tran... [more]
gi|592803913|gb|GAXK01150655.1|1.060e+040.00TSA: Calanus finmarchicus comp155055_c0_seq5 trans... [more]
gi|592787391|gb|GAXK01167177.1|1.101e+028.30TSA: Calanus finmarchicus comp1193_c26_seq551 tran... [more]
gi|592941547|gb|GAXK01017006.1|1.393e+035.71TSA: Calanus finmarchicus comp72331_c0_seq1 transc... [more]

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BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 3
Match NameE-valueIdentityDescription
EMLSAP000000059239.762e-163100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246... [more]
EMLSAP000000116187.646e-3344.78pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392... [more]
EMLSAP000000116178.496e-2640.58pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552... [more]
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BLAST of EMLSAG00000005923 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005923 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005923 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000005923 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s31supercontigLSalAtl2s31:790246..791300 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s31-snap-gene-8.28
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000005923 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000005923EMLSAT00000005923-701770Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s31:790246..791300-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000005923-688689 ID=EMLSAG00000005923-688689|Name=EMLSAG00000005923|organism=Lepeophtheirus salmonis|type=gene|length=1055bp|location=Sequence derived from alignment at LSalAtl2s31:790246..791300- (Lepeophtheirus salmonis)
ATGTTGAAAAAGCGTATTGAACACTTGGATCCCAAAATAAACGAAAGTGC AGCATTGGCATCCCTAATGATTGTTGTCACGTTAGAAGAAGGACAACAAA GATTCGATTGCAGCTTGTGTCACAGTCGTTATAAACATCATTCTTCCCTA TTTCGACATTTTAAATCCGCCCATCACAAAGAATATGAAGAAAGAGTAGC TTTGAGGGTAAAATTAAAGGCTGAAAGGGATGCTGCGATATCCCGGGGGG AACCTTATTTACGTAGACGTAATAGTAAGCGGGGCTTACGAAGTGTTAAA AAGAACAAGGAGAATACTACCTCAGAATCTGTTGCGAAGGAAGCAGAATC TCCTACAAAATCAACAAGTAAGACATCGACAGTTAATGTTAAACACGAGT TTAAATCTCCAAAATCACCAGCCAAGAGTCAGAAAAAAAACATCATTCAT ATAAAAATTCAACCCAAAGTTGAGGAACCTCACATTTCGTCTTTAGAAGA GGACACTGAGCTTCTTATGAAAAAGCTTGGAGAATCCACTAATGAACAAA TAATACCTAATGGGACTATACAAAATATTACTCCATCTGTTGTACTTATC CCTATTAAAAAGGTGCCTTTSCAGCCACAGAATATTAAAGAKCAGCCTAT CTATGATCCATCCCTTCCACTTGACCTGAGTTTGAAGGATGTAAAGGAAG ATCATTCTGCTTCAACATTGAATCACTGATTCGAAAAGAATATTAAAAAA AACTTTGTTTTGAAACCTATAGAATGCATGTTATTTTAGCATTTTCCCTG TTTTACTTGTGATCTATTAATTTAATTTCATTTACGAAATTATATGGTTG TTAATAAATAATTTGAATTTATTTACTTAAAATGTACTTGTTTTGACAAT CATTCGAGACTATTGAAATATATTAAATGTGGTTAGAATGAGATTGCGTC TTAATCAAATTCTTCTATTTTAAAATCTTCTTCATCTTCAAGGGTGAGCT GAGAGTCCATAGTTTGAGACGGATTAATCACGTTGCATTGAAAACGATGA CTTGA
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