EMLSAG00000005923, EMLSAG00000005923-688689 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592799004|gb|GAXK01155564.1| (TSA: Calanus finmarchicus comp105190_c0_seq1 transcribed RNA sequence) HSP 1 Score: 37.3502 bits (85), Expect = 3.158e-2 Identity = 14/30 (46.67%), Postives = 19/30 (63.33%), Query Frame = 0 Query: 29 EEGQQRFDCSLCHSRYKHHSSLFRHFKSAH 58 E+G++R+ C LC YKH SLF H + H Sbjct: 810 EDGEERYQCDLCDRSYKHKKSLFAHLEWKH 899
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592815746|gb|GAXK01138822.1| (TSA: Calanus finmarchicus comp1079525_c0_seq1 transcribed RNA sequence) HSP 1 Score: 36.1946 bits (82), Expect = 5.799e-2 Identity = 15/39 (38.46%), Postives = 24/39 (61.54%), Query Frame = 0 Query: 26 VTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEE 64 V +++ ++RF CS C +Y H S L RH + H+ + EE Sbjct: 563 VDIDKEKKRFVCSFCFRKYMHKSHLRRHLNAFHNSQLEE 679
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592906710|gb|GAXK01051665.1| (TSA: Calanus finmarchicus comp28971_c0_seq27 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 8.953e-2 Identity = 22/52 (42.31%), Postives = 25/52 (48.08%), Query Frame = 0 Query: 9 LDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHK 60 LD K S L I T G+ +F C LC R+ S LFRH KS H K Sbjct: 96 LDRKKKSSPILQKTCIAST--HGKIKFPCDLCPRRFLKKSHLFRHVKSVHDK 245
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592906707|gb|GAXK01051668.1| (TSA: Calanus finmarchicus comp28971_c0_seq30 transcribed RNA sequence) HSP 1 Score: 35.4242 bits (80), Expect = 1.098e-1 Identity = 22/52 (42.31%), Postives = 25/52 (48.08%), Query Frame = 0 Query: 9 LDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHK 60 LD K S L I T G+ +F C LC R+ S LFRH KS H K Sbjct: 96 LDRKKKSSPILQKTCIAST--HGKIKFPCDLCPRRFLKKSHLFRHVKSVHDK 245
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592762305|gb|GAXK01192108.1| (TSA: Calanus finmarchicus comp40839_c3_seq12 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 2.057e-1 Identity = 10/26 (38.46%), Postives = 19/26 (73.08%), Query Frame = 0 Query: 31 GQQRFDCSLCHSRYKHHSSLFRHFKS 56 G+++++C CH R+ SSL++H K+ Sbjct: 771 GEKKYECDNCHKRFTQSSSLYKHIKA 848
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592762314|gb|GAXK01192099.1| (TSA: Calanus finmarchicus comp40839_c3_seq3 transcribed RNA sequence) HSP 1 Score: 35.039 bits (79), Expect = 2.292e-1 Identity = 10/26 (38.46%), Postives = 19/26 (73.08%), Query Frame = 0 Query: 31 GQQRFDCSLCHSRYKHHSSLFRHFKS 56 G+++++C CH R+ SSL++H K+ Sbjct: 3621 GEKKYECDNCHKRFTQSSSLYKHIKA 3698
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592910229|gb|GAXK01048146.1| (TSA: Calanus finmarchicus comp677378_c2_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 2.832e-1 Identity = 13/31 (41.94%), Postives = 18/31 (58.06%), Query Frame = 0 Query: 32 QQRFDCSLCHSRYKHHSSLFRHFKSAHHKEY 62 Q C+LC R+K ++L HFK H+ EY Sbjct: 16 QSHITCNLCPRRFKKETALATHFKKIHNSEY 108
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592958123|gb|GAXK01000433.1| (TSA: Calanus finmarchicus comp4329851_c0_seq1 transcribed RNA sequence) HSP 1 Score: 34.2686 bits (77), Expect = 3.579e-1 Identity = 19/68 (27.94%), Postives = 32/68 (47.06%), Query Frame = 0 Query: 26 VTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGE-PYLRRRNS 92 +T+E G + F C++C R+ S RH H K + + K + E D A G+ ++ +NS Sbjct: 80 ITIENGVKMFACNVCSDRFDQPSKAKRHITIKHLKPEATKADSKAKREREDDDAPPGGDLKKMKNQNS 283
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592917100|gb|GAXK01041275.1| (TSA: Calanus finmarchicus comp2652973_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 4.314e-1 Identity = 14/33 (42.42%), Postives = 21/33 (63.64%), Query Frame = 0 Query: 27 TLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHH 59 T++ +RF C C S+ H +LFRH K++HH Sbjct: 155 TIDPTIKRFACLYCKSKSYHRRNLFRHVKNSHH 253
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Match: gi|592883937|gb|GAXK01074438.1| (TSA: Calanus finmarchicus comp501811_c2_seq1 transcribed RNA sequence) HSP 1 Score: 33.4982 bits (75), Expect = 6.620e-1 Identity = 18/42 (42.86%), Postives = 25/42 (59.52%), Query Frame = 0 Query: 31 GQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKL 72 G++ F CS C +R+ +SL HFK AHH+E E +R L Sbjct: 461 GEKNFKCSKCDARFVQKASLLSHFK-AHHRETEINENMRSAL 583
BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Match: EMLSAP00000005923 (pep:novel supercontig:LSalAtl2s:LSalAtl2s31:790246:791300:-1 gene:EMLSAG00000005923 transcript:EMLSAT00000005923 description:"maker-LSalAtl2s31-snap-gene-8.28") HSP 1 Score: 452.21 bits (1162), Expect = 9.762e-163 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0 Query: 1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKSPAKSQKKNIIHIKIQPKVEEPHISSLEEDTELLMKKLGESTNEQIIPNGTIQNITPSVVLIPIKKGELRVHSLRRINHVALKTMT 224 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKSPAKSQKKNIIHIKIQPKVEEPHISSLEEDTELLMKKLGESTNEQIIPNGTIQNITPSVVLIPIKKGELRVHSLRRINHVALKTMT Sbjct: 1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKSPAKSQKKNIIHIKIQPKVEEPHISSLEEDTELLMKKLGESTNEQIIPNGTIQNITPSVVLIPIKKGELRVHSLRRINHVALKTMT 224
BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Match: EMLSAP00000011618 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:83392:84519:1 gene:EMLSAG00000011618 transcript:EMLSAT00000011618 description:"augustus_masked-LSalAtl2s802-processed-gene-0.2") HSP 1 Score: 121.324 bits (303), Expect = 7.646e-33 Identity = 60/134 (44.78%), Postives = 83/134 (61.94%), Query Frame = 0 Query: 6 IEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKENTTSESVAKEAESPTKSTSKTSTVNVKHEFKSPKS 139 + + D KI +L+S+MIV L+ G RFDCS+C SRYKHH SLFRHFK AH ++YE++VALR LKAER+ G PY+RR+N KR + K NKEN + PT+ ++ + V + ++ P S Sbjct: 7 VVYFDKKICXDVSLSSMMIVSELQNGDIRFDCSICRSRYKHHPSLFRHFKCAHKEQYEQKVALREHLKAEREVLKMLGLPYMRRKNQKRNTKGRKVNKENISPLPEKPNDSIPTQLSNLGTLVPLDQKYMLPVS 140
BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Match: EMLSAP00000011617 (pep:novel supercontig:LSalAtl2s:LSalAtl2s802:54552:64646:-1 gene:EMLSAG00000011617 transcript:EMLSAT00000011617 description:"maker-LSalAtl2s802-snap-gene-0.20") HSP 1 Score: 101.293 bits (251), Expect = 8.496e-26 Identity = 56/138 (40.58%), Postives = 91/138 (65.94%), Query Frame = 0 Query: 1 MLKKRIEHLDPKINESAALASLMIVVTLEEGQQRFDCSLCHSRYKHHSSLFRHFKSAHHKEYEERVALRVKLKAERDAAISRGEPYLRRRNSKRGLRSVKKNKEN--------TTSESVAKEAESPTKSTSKTSTVNV 130 M KK + +LD K+ E + L+S+M+++ L++G+ RFDC++C RYKHH SLFRHF+SAH ++Y + ++LR ++++ER AA G Y RR+N KR +R ++ NKEN TT + ++ E S + + +T+ V Sbjct: 1 MGKKSVRYLDQKLTEDSTLSSMMVIIPLQDGEVRFDCNMCRRRYKHHPSLFRHFRSAHKEQYAKCLSLRNRIQSERAAAKLMGVAYPRRKNRKRNIRILQDNKENSLLPDDAHTTPQIISLEESSVETTHVQATTIQV 138 The following BLAST results are available for this feature:
BLAST of EMLSAG00000005923 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000005923 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
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BLAST of EMLSAG00000005923 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 3
BLAST of EMLSAG00000005923 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000005923 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000005923 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000005923 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s31:790246..791300- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000005923-688689 ID=EMLSAG00000005923-688689|Name=EMLSAG00000005923|organism=Lepeophtheirus salmonis|type=gene|length=1055bp|location=Sequence derived from alignment at LSalAtl2s31:790246..791300- (Lepeophtheirus salmonis)back to top Add to Basket
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