EMLSAG00000006175, EMLSAG00000006175-688941 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006175
Unique NameEMLSAG00000006175-688941
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000006175 vs. C. finmarchicus
Match: gi|592849564|gb|GAXK01107980.1| (TSA: Calanus finmarchicus comp1405868_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 1.316e+0
Identity = 12/30 (40.00%), Postives = 18/30 (60.00%), Query Frame = 0 
Query:    4 KVTYGTSSLKELFENSKHVILIYPNIIPDN 33
            KVT  ++ L   +E S H + IYP+ +P N
Sbjct:  520 KVTQESTELSPCWEESSHKVHIYPSWLPQN 609
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BLAST of EMLSAG00000006175 vs. C. finmarchicus
Match: gi|592789394|gb|GAXK01165174.1| (TSA: Calanus finmarchicus comp789164_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 4.256e+0
Identity = 16/37 (43.24%), Postives = 20/37 (54.05%), Query Frame = 0 
Query:   29 IIPDNSIQKKVSILGEEELLERYIFKAIRRREFCFFL 65
            +IPDN+   + + LG  EL  RY      R EF FFL
Sbjct: 1179 LIPDNNFTSQTTQLG*VELKIRYF-----RLEFSFFL 1274
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BLAST of EMLSAG00000006175 vs. C. finmarchicus
Match: gi|592936491|gb|GAXK01022062.1| (TSA: Calanus finmarchicus comp1359244_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 5.915e+0
Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 0 
Query:   18 NSKHVILIYPNIIPDNSIQKKVSI 41
            N+   +LI PN+IPD + +KK  I
Sbjct:  718 NTNK*VLIAPNVIPDTNTRKKKPI 789
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BLAST of EMLSAG00000006175 vs. C. finmarchicus
Match: gi|592858970|gb|GAXK01098592.1| (TSA: Calanus finmarchicus comp2261814_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 5.997e+0
Identity = 15/49 (30.61%), Postives = 26/49 (53.06%), Query Frame = 0 
Query:    5 VTYGTSSLKELFENSKHVILIYPNIIPDNSIQKKVSILGEEELLERYIF 53
            V+Y  +S  E+ ++ KH+IL+Y  ++ D   Q       E + L+R  F
Sbjct:  121 VSYNLNSFTEILDSLKHMILVYHQLV-DLHFQSLHIHFAEHKKLDRVFF 264
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BLAST of EMLSAG00000006175 vs. L. salmonis peptides
Match: EMLSAP00000006175 (pep:novel supercontig:LSalAtl2s:LSalAtl2s336:664724:665210:-1 gene:EMLSAG00000006175 transcript:EMLSAT00000006175 description:"maker-LSalAtl2s336-augustus-gene-6.45")

HSP 1 Score: 135.191 bits (339), Expect = 7.199e-43
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 
Query:    1 MEFKVTYGTSSLKELFENSKHVILIYPNIIPDNSIQKKVSILGEEELLERYIFKAIRRREFCFFLKF 67
            MEFKVTYGTSSLKELFENSKHVILIYPNIIPDNSIQKKVSILGEEELLERYIFKAIRRREFCFFLKF
Sbjct:    1 MEFKVTYGTSSLKELFENSKHVILIYPNIIPDNSIQKKVSILGEEELLERYIFKAIRRREFCFFLKF 67
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006175 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006175 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592849564|gb|GAXK01107980.1|1.316e+040.00TSA: Calanus finmarchicus comp1405868_c0_seq1 tran... [more]
gi|592789394|gb|GAXK01165174.1|4.256e+043.24TSA: Calanus finmarchicus comp789164_c0_seq1 trans... [more]
gi|592936491|gb|GAXK01022062.1|5.915e+045.83TSA: Calanus finmarchicus comp1359244_c0_seq1 tran... [more]
gi|592858970|gb|GAXK01098592.1|5.997e+030.61TSA: Calanus finmarchicus comp2261814_c0_seq1 tran... [more]
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BLAST of EMLSAG00000006175 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000061757.199e-43100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s336:66472... [more]
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BLAST of EMLSAG00000006175 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006175 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006175 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006175 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s336supercontigLSalAtl2s336:664724..665210 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s336-augustus-gene-6.45
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006175 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006175EMLSAT00000006175-702022Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s336:664724..665210-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006175-688941 ID=EMLSAG00000006175-688941|Name=EMLSAG00000006175|organism=Lepeophtheirus salmonis|type=gene|length=487bp|location=Sequence derived from alignment at LSalAtl2s336:664724..665210- (Lepeophtheirus salmonis)
ATGGAATTCAAGGTTACTTATGGAACTTCATCATTGAAAGAGTTATTTGA
AAACTCTAAGCATGTCATATTAATTTATCCTAATATCATTCCAGACAATT
CGATTCAAAAGAAGGTATCCATATTGGGAGAAGAAGAACTTTTGGAGAGG
TCAGTTCCGTATTGACTGTATTACTTAAGATTCATAGGATACACTCGTTT
ATTAATAGAAGTGCGAACAATTTTCCGAATATACTTGAATTTATTGTACC
CATTGAGGATATGTATTAATCTGTTCCCATCTCCAATCACTCACCAATGG
AGAAGCATGTACAACTTCCACCCAGTAGACTATATTGGTTCTTGGAGCAT
ATATGAATTTGATTTTTTATCCATTAGTGAAGATTAAATCTTAAACATCT
ACTTTCAACTCAAATTTTATTTCTACTTTTAGGTACATATTTAAGGCCAT
TCGTAGACGAGAGTTTTGCTTCTTTTTGAAATTTTAG
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