EMLSAG00000006319, EMLSAG00000006319-689085 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000006319 vs. C. finmarchicus
Match: gi|592892988|gb|GAXK01065387.1| (TSA: Calanus finmarchicus comp5452_c3_seq1 transcribed RNA sequence) HSP 1 Score: 33.8834 bits (76), Expect = 4.640e-2 Identity = 14/35 (40.00%), Postives = 22/35 (62.86%), Query Frame = 0 Query: 59 IQVRADDKWVDIXLDTHLYXPXELKVVVEENIYCM 93 I+++ DD ++I LDT Y P ELKV + + C+ Sbjct: 1188 IRIQDDDTKLEISLDTTGYKPDELKVSAGQGMICV 1292
BLAST of EMLSAG00000006319 vs. C. finmarchicus
Match: gi|592955138|gb|GAXK01003415.1| (TSA: Calanus finmarchicus comp186589_c1_seq4 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 2.562e+0 Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 0 Query: 2 QESKEFWKEIPKKSTLLVIP 21 QE +FW E+ +KST+L +P Sbjct: 794 QERADFWYEVDQKSTMLPLP 853
BLAST of EMLSAG00000006319 vs. C. finmarchicus
Match: gi|592955140|gb|GAXK01003413.1| (TSA: Calanus finmarchicus comp186589_c1_seq2 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 3.067e+0 Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 0 Query: 2 QESKEFWKEIPKKSTLLVIP 21 QE +FW E+ +KST+L +P Sbjct: 794 QERADFWYEVDQKSTMLPLP 853
BLAST of EMLSAG00000006319 vs. C. finmarchicus
Match: gi|592863796|gb|GAXK01093766.1| (TSA: Calanus finmarchicus comp2162938_c0_seq2 transcribed RNA sequence) HSP 1 Score: 27.335 bits (59), Expect = 6.236e+0 Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = 0 Query: 68 VDIXLDTHLYXPXELKVVVEENIYCM 93 +++ LDT Y P EL+V VE+ + C+ Sbjct: 119 MEVVLDTSEYQPEELEVHVEDGMICV 196
BLAST of EMLSAG00000006319 vs. L. salmonis peptides
Match: EMLSAP00000006319 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3449:39064:39345:-1 gene:EMLSAG00000006319 transcript:EMLSAT00000006319 description:"augustus_masked-LSalAtl2s3449-processed-gene-0.0") HSP 1 Score: 187.193 bits (474), Expect = 1.780e-62 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0 Query: 1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEENIYCM 93 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEENIYCM Sbjct: 1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEENIYCM 93
BLAST of EMLSAG00000006319 vs. L. salmonis peptides
Match: EMLSAP00000002963 (pep:novel supercontig:LSalAtl2s:LSalAtl2s16:934532:940638:1 gene:EMLSAG00000002963 transcript:EMLSAT00000002963 description:"augustus_masked-LSalAtl2s16-processed-gene-9.3") HSP 1 Score: 104.375 bits (259), Expect = 4.394e-29 Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = 0 Query: 1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEENIY 91 M+ES +FWKE+P+ +TL IP KRN+MLS L KD A E I +F KS SR DTTIQVR DDK +I LDTHLY P ELKV V+EN + Sbjct: 33 MKESNDFWKEVPEMNTLQAIPPKRNWMLSRQLSKDGNAPESIEKVFQKSANASRDDTTIQVRDDDKKFEISLDTHLYRPEELKVHVDENRF 123
BLAST of EMLSAG00000006319 vs. nr
Match: gi|225713266|gb|ACO12479.1| (Heat shock protein homolog [Lepeophtheirus salmonis] >gi|290563064|gb|ADD38926.1| Heat shock protein homolog [Lepeophtheirus salmonis]) HSP 1 Score: 106.686 bits (265), Expect = 3.409e-27 Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 0 Query: 1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEEN-IYCM 93 M+ES +FWKE+P+ +TL IP KRN+MLS L KD A E I +F KS SR DTTIQVR DDK +I LDTHLY P ELKV VEEN I C+ Sbjct: 33 MKESNDFWKEVPEMNTLQAIPPKRNWMLSRQLSKDGNAPESIEKVFQKSANASRDDTTIQVRDDDKKFEISLDTHLYRPDELKVNVEENRILCV 126
BLAST of EMLSAG00000006319 vs. nr
Match: gi|290560978|gb|ADD37891.1| (Protein lethal2essential for life [Lepeophtheirus salmonis]) HSP 1 Score: 103.99 bits (258), Expect = 3.752e-26 Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = 0 Query: 1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEENIY 91 M+ES +FWKE+P+ +TL IP KRN+MLS L KD A E I +F KS SR DTTIQVR DDK +I LDTHLY P ELKV V+EN + Sbjct: 33 MKESNDFWKEVPEMNTLKAIPPKRNWMLSRQLSKDGNAPESIEKVFQKSANASRDDTTIQVRDDDKKFEISLDTHLYRPEELKVHVDENRF 123
BLAST of EMLSAG00000006319 vs. nr
Match: gi|225712148|gb|ACO11920.1| (lethal2essential for life [Lepeophtheirus salmonis]) HSP 1 Score: 101.679 bits (252), Expect = 3.248e-25 Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 0 Query: 1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEENIY 91 ++ES +FWKE+P+ S+L+ IPHKRN+MLSH+L KD A E I +F K+ T R D+TI V DDK +I LDTHLY P ELKV V++N + Sbjct: 33 IKESNDFWKEVPEMSSLVAIPHKRNWMLSHHLSKDGNAPESIEKVFQKAATAPRDDSTIHVLDDDKKFEISLDTHLYRPEELKVHVDKNRF 123
BLAST of EMLSAG00000006319 vs. nr
Match: gi|290462857|gb|ADD24476.1| (Protein lethal2essential for life [Lepeophtheirus salmonis]) HSP 1 Score: 101.293 bits (251), Expect = 3.948e-25 Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = 0 Query: 1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEENIY 91 ++ES +FWKE+P+ S+L+ IPHKRN+MLSH+L KD A E I +F K+ T R D+TI V DDK +I LDTHLY P ELKV V+ N + Sbjct: 33 IKESNDFWKEVPEMSSLVAIPHKRNWMLSHHLSKDGNAPESIEKVFQKAATAPRDDSTIHVLDDDKKFEISLDTHLYRPEELKVHVDNNRF 123
BLAST of EMLSAG00000006319 vs. nr
Match: gi|225717968|gb|ACO14830.1| (lethal2essential for life [Caligus clemensi]) HSP 1 Score: 87.4261 bits (215), Expect = 1.147e-19 Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 0 Query: 1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEEN 89 M+ES EF+K +P+ +L ++P +RN+MLS L K+ +A + I +F K+ + R + TIQVR D+K +I LDTHLY P ELKV VEEN Sbjct: 33 MKESSEFFKNVPEMKSLDIVPPRRNWMLSRQLSKEGQAPDAIEKVFQKTSSAPRDEATIQVRDDEKKFEISLDTHLYRPDELKVNVEEN 121 The following BLAST results are available for this feature:
BLAST of EMLSAG00000006319 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000006319 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 4
BLAST of EMLSAG00000006319 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000006319 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000006319 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000006319 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 5
BLAST of EMLSAG00000006319 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s3449:39064..39345- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000006319-689085 ID=EMLSAG00000006319-689085|Name=EMLSAG00000006319|organism=Lepeophtheirus salmonis|type=gene|length=282bp|location=Sequence derived from alignment at LSalAtl2s3449:39064..39345- (Lepeophtheirus salmonis)back to top Add to Basket
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