EMLSAG00000006319, EMLSAG00000006319-689085 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006319
Unique NameEMLSAG00000006319-689085
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000006319 vs. C. finmarchicus
Match: gi|592892988|gb|GAXK01065387.1| (TSA: Calanus finmarchicus comp5452_c3_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 4.640e-2
Identity = 14/35 (40.00%), Postives = 22/35 (62.86%), Query Frame = 0
Query:   59 IQVRADDKWVDIXLDTHLYXPXELKVVVEENIYCM 93
            I+++ DD  ++I LDT  Y P ELKV   + + C+
Sbjct: 1188 IRIQDDDTKLEISLDTTGYKPDELKVSAGQGMICV 1292          
BLAST of EMLSAG00000006319 vs. C. finmarchicus
Match: gi|592955138|gb|GAXK01003415.1| (TSA: Calanus finmarchicus comp186589_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 2.562e+0
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 0
Query:    2 QESKEFWKEIPKKSTLLVIP 21
            QE  +FW E+ +KST+L +P
Sbjct:  794 QERADFWYEVDQKSTMLPLP 853          
BLAST of EMLSAG00000006319 vs. C. finmarchicus
Match: gi|592955140|gb|GAXK01003413.1| (TSA: Calanus finmarchicus comp186589_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.067e+0
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 0
Query:    2 QESKEFWKEIPKKSTLLVIP 21
            QE  +FW E+ +KST+L +P
Sbjct:  794 QERADFWYEVDQKSTMLPLP 853          
BLAST of EMLSAG00000006319 vs. C. finmarchicus
Match: gi|592863796|gb|GAXK01093766.1| (TSA: Calanus finmarchicus comp2162938_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 6.236e+0
Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = 0
Query:   68 VDIXLDTHLYXPXELKVVVEENIYCM 93
            +++ LDT  Y P EL+V VE+ + C+
Sbjct:  119 MEVVLDTSEYQPEELEVHVEDGMICV 196          
BLAST of EMLSAG00000006319 vs. L. salmonis peptides
Match: EMLSAP00000006319 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3449:39064:39345:-1 gene:EMLSAG00000006319 transcript:EMLSAT00000006319 description:"augustus_masked-LSalAtl2s3449-processed-gene-0.0")

HSP 1 Score: 187.193 bits (474), Expect = 1.780e-62
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
Query:    1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEENIYCM 93
            MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEENIYCM
Sbjct:    1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEENIYCM 93          
BLAST of EMLSAG00000006319 vs. L. salmonis peptides
Match: EMLSAP00000002963 (pep:novel supercontig:LSalAtl2s:LSalAtl2s16:934532:940638:1 gene:EMLSAG00000002963 transcript:EMLSAT00000002963 description:"augustus_masked-LSalAtl2s16-processed-gene-9.3")

HSP 1 Score: 104.375 bits (259), Expect = 4.394e-29
Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = 0
Query:    1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEENIY 91
            M+ES +FWKE+P+ +TL  IP KRN+MLS  L KD  A E I  +F KS   SR DTTIQVR DDK  +I LDTHLY P ELKV V+EN +
Sbjct:   33 MKESNDFWKEVPEMNTLQAIPPKRNWMLSRQLSKDGNAPESIEKVFQKSANASRDDTTIQVRDDDKKFEISLDTHLYRPEELKVHVDENRF 123          
BLAST of EMLSAG00000006319 vs. nr
Match: gi|225713266|gb|ACO12479.1| (Heat shock protein homolog [Lepeophtheirus salmonis] >gi|290563064|gb|ADD38926.1| Heat shock protein homolog [Lepeophtheirus salmonis])

HSP 1 Score: 106.686 bits (265), Expect = 3.409e-27
Identity = 57/94 (60.64%), Postives = 66/94 (70.21%), Query Frame = 0
Query:    1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEEN-IYCM 93
            M+ES +FWKE+P+ +TL  IP KRN+MLS  L KD  A E I  +F KS   SR DTTIQVR DDK  +I LDTHLY P ELKV VEEN I C+
Sbjct:   33 MKESNDFWKEVPEMNTLQAIPPKRNWMLSRQLSKDGNAPESIEKVFQKSANASRDDTTIQVRDDDKKFEISLDTHLYRPDELKVNVEENRILCV 126          
BLAST of EMLSAG00000006319 vs. nr
Match: gi|290560978|gb|ADD37891.1| (Protein lethal2essential for life [Lepeophtheirus salmonis])

HSP 1 Score: 103.99 bits (258), Expect = 3.752e-26
Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = 0
Query:    1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEENIY 91
            M+ES +FWKE+P+ +TL  IP KRN+MLS  L KD  A E I  +F KS   SR DTTIQVR DDK  +I LDTHLY P ELKV V+EN +
Sbjct:   33 MKESNDFWKEVPEMNTLKAIPPKRNWMLSRQLSKDGNAPESIEKVFQKSANASRDDTTIQVRDDDKKFEISLDTHLYRPEELKVHVDENRF 123          
BLAST of EMLSAG00000006319 vs. nr
Match: gi|225712148|gb|ACO11920.1| (lethal2essential for life [Lepeophtheirus salmonis])

HSP 1 Score: 101.679 bits (252), Expect = 3.248e-25
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 0
Query:    1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEENIY 91
            ++ES +FWKE+P+ S+L+ IPHKRN+MLSH+L KD  A E I  +F K+ T  R D+TI V  DDK  +I LDTHLY P ELKV V++N +
Sbjct:   33 IKESNDFWKEVPEMSSLVAIPHKRNWMLSHHLSKDGNAPESIEKVFQKAATAPRDDSTIHVLDDDKKFEISLDTHLYRPEELKVHVDKNRF 123          
BLAST of EMLSAG00000006319 vs. nr
Match: gi|290462857|gb|ADD24476.1| (Protein lethal2essential for life [Lepeophtheirus salmonis])

HSP 1 Score: 101.293 bits (251), Expect = 3.948e-25
Identity = 50/91 (54.95%), Postives = 65/91 (71.43%), Query Frame = 0
Query:    1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEENIY 91
            ++ES +FWKE+P+ S+L+ IPHKRN+MLSH+L KD  A E I  +F K+ T  R D+TI V  DDK  +I LDTHLY P ELKV V+ N +
Sbjct:   33 IKESNDFWKEVPEMSSLVAIPHKRNWMLSHHLSKDGNAPESIEKVFQKAATAPRDDSTIHVLDDDKKFEISLDTHLYRPEELKVHVDNNRF 123          
BLAST of EMLSAG00000006319 vs. nr
Match: gi|225717968|gb|ACO14830.1| (lethal2essential for life [Caligus clemensi])

HSP 1 Score: 87.4261 bits (215), Expect = 1.147e-19
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 0
Query:    1 MQESKEFWKEIPKKSTLLVIPHKRNYMLSHYLMKDVKAQEFIGNLFPKSPTPSRVDTTIQVRADDKWVDIXLDTHLYXPXELKVVVEEN 89
            M+ES EF+K +P+  +L ++P +RN+MLS  L K+ +A + I  +F K+ +  R + TIQVR D+K  +I LDTHLY P ELKV VEEN
Sbjct:   33 MKESSEFFKNVPEMKSLDIVPPRRNWMLSRQLSKEGQAPDAIEKVFQKTSSAPRDEATIQVRDDEKKFEISLDTHLYRPDELKVNVEEN 121          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006319 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006319 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 4
Match NameE-valueIdentityDescription
gi|592892988|gb|GAXK01065387.1|4.640e-240.00TSA: Calanus finmarchicus comp5452_c3_seq1 transcr... [more]
gi|592955138|gb|GAXK01003415.1|2.562e+050.00TSA: Calanus finmarchicus comp186589_c1_seq4 trans... [more]
gi|592955140|gb|GAXK01003413.1|3.067e+050.00TSA: Calanus finmarchicus comp186589_c1_seq2 trans... [more]
gi|592863796|gb|GAXK01093766.1|6.236e+042.31TSA: Calanus finmarchicus comp2162938_c0_seq2 tran... [more]
back to top
BLAST of EMLSAG00000006319 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000063191.780e-62100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s3449:3906... [more]
EMLSAP000000029634.394e-2959.34pep:novel supercontig:LSalAtl2s:LSalAtl2s16:934532... [more]
back to top
BLAST of EMLSAG00000006319 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006319 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000006319 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 5
Match NameE-valueIdentityDescription
gi|225713266|gb|ACO12479.1|3.409e-2760.64Heat shock protein homolog [Lepeophtheirus salmoni... [more]
gi|290560978|gb|ADD37891.1|3.752e-2659.34Protein lethal2essential for life [Lepeophtheirus ... [more]
gi|225712148|gb|ACO11920.1|3.248e-2554.95lethal2essential for life [Lepeophtheirus salmonis... [more]
gi|290462857|gb|ADD24476.1|3.948e-2554.95Protein lethal2essential for life [Lepeophtheirus ... [more]
gi|225717968|gb|ACO14830.1|1.147e-1949.44lethal2essential for life [Caligus clemensi][more]
back to top
BLAST of EMLSAG00000006319 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s3449supercontigLSalAtl2s3449:39064..39345 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s3449-processed-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHeat shock protein homolog [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006319 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006319EMLSAT00000006319-702166Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s3449:39064..39345-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006319-689085 ID=EMLSAG00000006319-689085|Name=EMLSAG00000006319|organism=Lepeophtheirus salmonis|type=gene|length=282bp|location=Sequence derived from alignment at LSalAtl2s3449:39064..39345- (Lepeophtheirus salmonis)
ATGCAGGAAAGCAAGGAATTTTGGAAGGAAATACCCAAAAAGAGCACCTT GTTAGTGATTCCTCATAAAAGGAACTATATGCTCTCTCATTATTTAATGA AGGATGTAAAGGCTCAAGAATTCATTGGGAATTTATTTCCCAAATCTCCC ACTCCTTCCCGGGTTGACACCACTATTCAAGTTCGTGCTGATGATAAGTG GGTTGACATATRCCTGGATACTCATCTCTATRGRCCTTAWGAGCTTAAGG TAGTTGTGGAAGAAAACATATACTGTATGTAG
back to top
Add to Basket