EMLSAG00000006413, EMLSAG00000006413-689179 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006413
Unique NameEMLSAG00000006413-689179
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000006413 vs. C. finmarchicus
Match: gi|592761390|gb|GAXK01193023.1| (TSA: Calanus finmarchicus comp3359269_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 2.755e+0
Identity = 20/55 (36.36%), Postives = 26/55 (47.27%), Query Frame = 0 
Query:   85 GNVKLLKKP--CNFLGYSHVPCRTKKYC--------KCNGTDHFTSCCNSGLSNT 129
            G+V L+ KP  C F G +H   R K++C        KC    HF+  C SG S  
Sbjct:  171 GSVNLVTKPMKCRFCGSNHS--RGKQFCQAAGKKCDKCGKIGHFSKVCLSGASQA 329
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BLAST of EMLSAG00000006413 vs. C. finmarchicus
Match: gi|592766024|gb|GAXK01188544.1| (TSA: Calanus finmarchicus comp10968_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 6.101e+0
Identity = 25/87 (28.74%), Postives = 39/87 (44.83%), Query Frame = 0 
Query:   64 YKGPKGTRRPGSINSRRDRPQGNVKLLKKPCNFLGYSH--VPCRTKKYCKCNGTDHFTSCCNSGLSNTVALSVNGELVTFLIDWGAN 148
            Y  P      G I++R++ P      L  PC  L YS   +   +     C  T    +C N+GLS+ V    +  L+ FL++ G+N
Sbjct:   13 YFNPLAPSACGFISARKE-PATPTSCLT-PCFCLTYSAAWLAQNSSAVMICVITRSLYNCSNAGLSDKVLFFSSNSLLIFLLNLGSN 267
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BLAST of EMLSAG00000006413 vs. L. salmonis peptides
Match: EMLSAP00000006413 (pep:novel supercontig:LSalAtl2s:LSalAtl2s350:792007:796320:1 gene:EMLSAG00000006413 transcript:EMLSAT00000006413 description:"snap_masked-LSalAtl2s350-processed-gene-6.21")

HSP 1 Score: 381.719 bits (979), Expect = 2.406e-136
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 
Query:    1 MILDALIFRLAKRRLSMNFPIDSFDPNKIAISAVVKCWIEDNLSCKSVSEEWGAMRLAVLMSEYKGPKGTRRPGSINSRRDRPQGNVKLLKKPCNFLGYSHVPCRTKKYCKCNGTDHFTSCCNSGLSNTVALSVNGELVTFLIDWGANVNILLMSRTPAPPSSKFSGHITAYGGNKILTYDPVA 184
            MILDALIFRLAKRRLSMNFPIDSFDPNKIAISAVVKCWIEDNLSCKSVSEEWGAMRLAVLMSEYKGPKGTRRPGSINSRRDRPQGNVKLLKKPCNFLGYSHVPCRTKKYCKCNGTDHFTSCCNSGLSNTVALSVNGELVTFLIDWGANVNILLMSRTPAPPSSKFSGHITAYGGNKILTYDPVA
Sbjct:    1 MILDALIFRLAKRRLSMNFPIDSFDPNKIAISAVVKCWIEDNLSCKSVSEEWGAMRLAVLMSEYKGPKGTRRPGSINSRRDRPQGNVKLLKKPCNFLGYSHVPCRTKKYCKCNGTDHFTSCCNSGLSNTVALSVNGELVTFLIDWGANVNILLMSRTPAPPSSKFSGHITAYGGNKILTYDPVA 184
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006413 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006413 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592761390|gb|GAXK01193023.1|2.755e+036.36TSA: Calanus finmarchicus comp3359269_c0_seq1 tran... [more]
gi|592766024|gb|GAXK01188544.1|6.101e+028.74TSA: Calanus finmarchicus comp10968_c2_seq2 transc... [more]
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BLAST of EMLSAG00000006413 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000064132.406e-136100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s350:79200... [more]
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BLAST of EMLSAG00000006413 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006413 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006413 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006413 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s350supercontigLSalAtl2s350:792007..796320 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s350-processed-gene-6.21
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006413 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006413EMLSAT00000006413-702260Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s350:792007..796320+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006413-689179 ID=EMLSAG00000006413-689179|Name=EMLSAG00000006413|organism=Lepeophtheirus salmonis|type=gene|length=4314bp|location=Sequence derived from alignment at LSalAtl2s350:792007..796320+ (Lepeophtheirus salmonis)
CTCCTACCATGAATGGTTCATCTATAAATAAATGATATTAGGTAAATAAT
AAATATCAATCATATGATAGTGTGATAAATTAATACCATTTAATTCTTTT
TACAGCCTTCTGATAGGGAGTATCTTGATTTTTAATGGCGTAAAACAAAA
AATTTCTAAATGCCTCCAAATGAGAAGAGAAGCTCCCTCAATGGCAATCC
CAGCTAAAGTAATTTCGTACTTTGTTTTGTGTAGACGCTTTGATTTTTCG
ACTGGCAAAAAGACGTTTGTCCATGAATTTCCCAATCGACTCTTTTGATC
CTAATAAGATAGCTATCTCTGCGGTTGTTAAATGTTGGATCGAGGATAAC
TTGTCCTGTAAATCTGTTAGTGAAGAGTGGGGCGCAATGAGATTGTTGGA
CAAAGATTGCAGTACAGTGACAATGTGCCATAAACTTGGAGGACGACTCG
GAATATAAGTATTGTTACTGTTACAATATTTCGAGCTTTTAATGAGGTTT
AGAAGGATGAAAAAAATATTTCTAAACCAAATACATTTAATTGAGCTATG
AGTTAGTGTAGTTATATGAATTTACTCATTGACTTAAATAGATTTGGAAT
TAGAATCAGTTTTATTCAAGTAATATGTAATATTCCACAATTAAAGTTGC
ATTAATAATTGGGATGAACAAGATTATATATCCCCATTCATGAGCTTAAA
AAAGGATCAAAGTAATGTAATTTTAAACACATCTAATTCCCATGAAGTAA
TAATTTTGGATGATGAGTGAGTCAGGAGTCATCAGAGTAATGTGTATTCA
CTCACAAAGTCGATGTGTAACAAAGATAATATGTATATTTATCGATGATT
TGGAGAAGTAAATTTTAAATAACTCCAGATTTTGAGGCCGGATCTCTAAA
TAATATAAATCCAAGCTCAACAAACTATTCGAATCATACTTTACGAATTA
AATTTAAAATATCAGTCCTCAAAATATTAAATAACCTTCAAACAATTTCA
TTAAAACACACACATCTAAAAATAAATGATTCTTGATGTATAGTTTGGAA
TAATATTTAAGGATATTGTGTCTAAATCCAACCATTTGAATTATACGACT
CCAAATCCATTTGACTCATTGTGCAAATACACTCGACTCTATCACCTTTA
TGTATTAATCCCAGTAGTAACCTAAAGATCAACTGAAGAATAATATTTCA
TATTAATTATTTATTTGAATGAAATAATGATATTGTACAAACACGAACTG
AATTTGATAATTTATTTTCGAAGGACAAATCCATCAGTTTAAGTAATTAG
TTTAATAATATTTTGAGCATTTATGTATATATAATATAAATCTACTTTGA
TATTAAATTTCATATATTCAGTCAAACTATCAATTTTTGCTCAATAACAT
TTTTTTTTATATTTCAAATGTTATCCCAAAATGAAAATTGATTAAAATAC
CACGTGAAGTTCAGATAAAATTACAACTACGACAAAAAATTAAGGTTTTA
CCTCGCTAACACAAAAATACCCCCTTGTATTTTGTTATCACCTATCCATT
CCCTCCCCTCACAAGTCGTGGCTAGTGTTGGTAAATATTTTATCTTCAAT
AAGCAACGCAGAATTCTTCACCACAACGTTGAAAAGCTTATCGATATTTG
AGGAATATAGGTAGAAAAACAGTGAGCAGATTTGCAAGTTGTTGATGGTT
TTTCATAGGATAGTGAATATAATACACGGTAAATACTTGAGAAGTTGCGT
GTTTATTTATGTGTATTAAGTTGCGTTACATTTTATACAAAGTCATTTCG
TATATATTATCTTGTATATAATAAATAAAGAAGTAACTCAATAGGTGAAG
AAGCGAAGAATTATTCCTGAGTGCAAGAACTTAATCGCTGCAATTAATTA
CATATCCATACTCAATTACTATTACCTATTAAAACTATAATAATACCCTC
GACTAAAAGTAATGTGATTCTAGAATATGACTACACATAGTGTAAACAAA
ACTGTAGACATAATAGGAATCTCTGATCATTGCTAAAAGACTTACACGTA
TCTCACTTCTACATAAGTTTCTAAGAAGTTCATTTCTAGTTCAAGGTATT
ATGATAACCAACGGTAGTTGAGTATTTACTTTTATTATTTCCATGATTTA
AGGTTATATCATAGTTATATATTTTTAGAGATGTGCAGACATAGCACGTT
TTTGGATAATGACTGTGATATACATATATCTGACAATATAAATACTATTC
CTTGCTGGTGTTGAAGATCCTCAACAGAAAGTTATATAGCAGGGAGATTT
CCCCATAGTGTTCTCAATTTGCATATCATATTGATCTACATTCAGGGATA
AGATTTTAGAAATTATTCTTTCTTCGGCTTTTTATGGATCGACTTTAACA
AGTTGAATTATGTCAAATAAGGAAACTATTTACGTTTCAGTAGTATTCTT
TGGATATTTGTTAAATAAACAATTTTCACTGAAGTACAACCAAGTATATT
CAGTAATTTATTTTTATTGATATAGGCCAGGGAATACTAAATACATGGAA
TACTCCGCTTAGTTGTCTATAGCAGCTGAATCTTCCCTCTATACTTTCAG
ACTGGAACATGACAATCAATATATAGTCGAAGTCCTTATTCTCACTATCC
AGCAAGTACTCAGCAAGATCTGCTGCAGCCAAGAAAGTATGCTTAGTTGC
GAAAAAAGTTTCTTTCGTGAGTCCTCTTTCAGCACTATCTTTTTAAACAG
TGAGTAAGTCGGCAAACTCTTTGAGGAAGGACAAACCAGCACGATTTTCT
TTTGTGATGGGTTTTCTAATATTGTCATTTTTCCTCAGCCCAACTGTTGG
TGCCTTTACTTTTAAGATGTTCCACATAGTCCGTACAAATTCAAGAAACT
CACTGTATCCATAAGCTCAGGTCTTTGATTGGTGTAAAACTTAAGGGCTC
CAATGGTTGATTCATGAAAAATAGAATCACCTAATTGCACGTTTGTCTTT
TTCATTGCTGTCTGATGAAGAGATTTGAGATTAAGTTGTTTAGATTGTCT
TACTTTATACGTGGATTCCTTGTGATAAATCTCTGTAATGTGAGCAAAAT
TTGGACGTAAACACGTTTTGGCACCCAGAGAGTTCAGGGGATATCGAAGT
ATCCTTGCCGCTAAAAACAGTTATAGATATTTTTGAAATTGTGCACGGAA
TCGAAGAGGAAATTCACATTGAGGTAATTATTGTGAGGATGAATTATGGA
TGTTTGCAGATGATCAGCACAAAGAAGCTACGAGTAAAAGTTCCTGTTGG
CTAGGTGGMTATCAACATATAAGGATACAACAATAAATCCAATTTGGTAT
AGTGCTTGCATGATGACTATATATATTGACTAAAGATGAATTCGGGATTC
AAATTTGCCACGGGGATAAAAGATACAACATCCATGTATTTTCCCCCAGT
AGACTTTATCATAAAGGTGAGGACAGTTTTAGTGGTTTGATTCTTCTCAG
TTCCTAGAAACTTGCCTCTCACAAACTCCTCTGTGCTGGCTCTCAAGTAC
AAAAAACATTGGAATTGAAGCTGAGAGAAGAAGAAGATTATTTTGTTGCT
CTCATCCGGGCATAGATGAAGTATTCTCCCCTATGGAATTGATACTTTTT
GAACGCTTCTGCCTTACAGAGCGGAAGCAGAGTGTGGGGAAACCAATTGT
TGACTATGTTTCGCCCCTCCGCGCCCAAGCCAGATTGAGTAAGCTTCTCT
GTGCTAACTGTGATACATCCTATGAAGATAATGTCCTCGTTGGAACTTTT
GTTAAGAATATGTGTCAAATTGTGTTAGATGGTGTTTGAAAAAAGATCGT
CAAGTTCGAAAAAGTGATCCAGCTGGGACSAGCTTNNAGAGAATGCGGAG
ACCCACTCCCTTCAGAKTAACTCAAATAGAGCCGTTCTCATGTCCGAGTA
TAAAGGCCCCAAGGGGACACGTCGTCCCGGAAGTATTAATTCTCGTCGAG
ACCGACCTCAGGGTAATGTAAAACTTTTGAAGAAGCCCTGTAACTTTTTA
GGGTACTCACATGTGCCCTGCCGTACAAAGAAGTACTGCAAGTGCAATGG
CACTGATCACTTCACTTCCTGCTGTAACTCTGGACTGAGCAACACTGTTG
CGTTGAGCGTGAATGGAGAATTGGTTACCTTTTTAATCGATTGGGGTGCC
AATGTGAACATTCTCCTGATGAGTAGAACCCCTGCGCCCCCAAGCTCTAA
ATTCTCAGGTCATATCACAGCATATGGAGGGAATAAAATCCTAACTTATG
ACCCTGTTGCCTAA
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