EMLSAG00000006418, EMLSAG00000006418-689184 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006418
Unique NameEMLSAG00000006418-689184
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000006418 vs. C. finmarchicus
Match: gi|592950801|gb|GAXK01007752.1| (TSA: Calanus finmarchicus comp9958917_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 9.909e-1
Identity = 12/45 (26.67%), Postives = 23/45 (51.11%), Query Frame = 0
Query:   24 RSLWRGRSLNTNCFAQIRGGTRLKKMSQKSYVVKDLLIQSLIFKI 68
            +S+W  +  N NCF+  R   +LK    +S+  KD     + +++
Sbjct:  124 QSIWNWKQCNCNCFSNKRAKPKLKSHKNESF-AKDNFTFPINYRV 255          
BLAST of EMLSAG00000006418 vs. C. finmarchicus
Match: gi|592763112|gb|GAXK01191417.1| (TSA: Calanus finmarchicus comp712981_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 6.432e+0
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 0
Query:    3 KEGISLKLSVEIINKTNVKLKRSL 26
            KEGI L   +E+I+KTN+K  R L
Sbjct:  403 KEGIVLNDHIEVISKTNIKSMRML 474          
BLAST of EMLSAG00000006418 vs. C. finmarchicus
Match: gi|592927656|gb|GAXK01030814.1| (TSA: Calanus finmarchicus comp116215_c2_seq5 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 7.577e+0
Identity = 14/30 (46.67%), Postives = 18/30 (60.00%), Query Frame = 0
Query:   21 KLKRSLWRGRSLNTNCFAQIRGGTRLKKMS 50
            +L+RS   G SL  +C  Q+R G  L KMS
Sbjct:   58 RLQRSSGPGASLTQSCSLQVRVGGVLVKMS 147          
BLAST of EMLSAG00000006418 vs. C. finmarchicus
Match: gi|592813463|gb|GAXK01141105.1| (TSA: Calanus finmarchicus comp3255868_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.654e+0
Identity = 10/30 (33.33%), Postives = 19/30 (63.33%), Query Frame = 0
Query:   35 NCFAQIRGGTRLKKMSQKSYVVKDLLIQSL 64
            NC   +RG  R +++ QK  V+++L++  L
Sbjct:  633 NCMITLRGEERAEEVKQKCKVIENLMVTVL 722          
BLAST of EMLSAG00000006418 vs. C. finmarchicus
Match: gi|592835512|gb|GAXK01122032.1| (TSA: Calanus finmarchicus comp107670_c7_seq19 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 7.761e+0
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 0
Query:   31 SLNTNCFAQIRGGTRLKK 48
            SL T CF  + GGTRL++
Sbjct:  272 SLGTQCFTTLLGGTRLER 325          
BLAST of EMLSAG00000006418 vs. L. salmonis peptides
Match: EMLSAP00000006418 (pep:novel supercontig:LSalAtl2s:LSalAtl2s3518:6066:6433:-1 gene:EMLSAG00000006418 transcript:EMLSAT00000006418 description:"maker-LSalAtl2s3518-snap-gene-0.0")

HSP 1 Score: 134.806 bits (338), Expect = 1.150e-42
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
Query:    1 MEKEGISLKLSVEIINKTNVKLKRSLWRGRSLNTNCFAQIRGGTRLKKMSQKSYVVKDLLIQSLIFKI 68
            MEKEGISLKLSVEIINKTNVKLKRSLWRGRSLNTNCFAQIRGGTRLKKMSQKSYVVKDLLIQSLIFKI
Sbjct:    1 MEKEGISLKLSVEIINKTNVKLKRSLWRGRSLNTNCFAQIRGGTRLKKMSQKSYVVKDLLIQSLIFKI 68          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006418 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006418 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592950801|gb|GAXK01007752.1|9.909e-126.67TSA: Calanus finmarchicus comp9958917_c0_seq1 tran... [more]
gi|592763112|gb|GAXK01191417.1|6.432e+054.17TSA: Calanus finmarchicus comp712981_c0_seq1 trans... [more]
gi|592927656|gb|GAXK01030814.1|7.577e+046.67TSA: Calanus finmarchicus comp116215_c2_seq5 trans... [more]
gi|592813463|gb|GAXK01141105.1|7.654e+033.33TSA: Calanus finmarchicus comp3255868_c0_seq1 tran... [more]
gi|592835512|gb|GAXK01122032.1|7.761e+055.56TSA: Calanus finmarchicus comp107670_c7_seq19 tran... [more]
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BLAST of EMLSAG00000006418 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000064181.150e-42100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s3518:6066... [more]
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BLAST of EMLSAG00000006418 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006418 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006418 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006418 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s3518supercontigLSalAtl2s3518:6066..6433 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s3518-snap-gene-0.0
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006418 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006418EMLSAT00000006418-702265Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s3518:6066..6433-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006418-689184 ID=EMLSAG00000006418-689184|Name=EMLSAG00000006418|organism=Lepeophtheirus salmonis|type=gene|length=368bp|location=Sequence derived from alignment at LSalAtl2s3518:6066..6433- (Lepeophtheirus salmonis)
ATGGAGAAAGAAGGGATTTCATTGAAGCTATCAGTGGAAATCATCAACAA AACTAATGTTAAACTAAAAAGATCCCTGGTAAATATGGTCAGCAACTTAA AAATAGTTGTCCAAAAACACTAATGTATGGTTCTTGAGGAAAAGGTCAGC CATCCCTTCATAGAGGACAATACTGTGGAAGTAAGCCTTTGATCGCAATT TTGTAGCTATATTGAAATTTTGACCCATTGTAACTGCAAAAGTGGAGAGG TCGTTCTCTCAATACAAATTGCTTTGCTCAGATTAGAGGAGGTACCAGAC TAAAGAAAATGTCACAAAAATCATATGTTGTCAAAGATTTATTAATTCAA AGTTTAATATTTAAAATA
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