EMLSAG00000006525, EMLSAG00000006525-689291 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006525
Unique NameEMLSAG00000006525-689291
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000006525 vs. C. finmarchicus
Match: gi|592779266|gb|GAXK01175302.1| (TSA: Calanus finmarchicus comp3152_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 58.151 bits (139), Expect = 1.680e-8
Identity = 61/229 (26.64%), Postives = 105/229 (45.85%), Query Frame = 0
Query:  120 GRFLREEINEFAETLIERAIDFSRLV---FQKPYPSES---IQKLGIVWDLYDV--SFSSNNLEACIKILSREKDLIKDALDELLE-------NDEGD-----TETEELARSKGSGLVKSVWVLNKKLIESIGHAS--------TDIDDITSATLKLSEYVDDYVFSLYSASEEPDSVRESAETLNESANNILDKIHQ-NPERSSDFGSWGVFLKKAFSHNYTQIQNVI 319
            G  +R  + E  +T++E  + F + +     + +P+ S   +Q  G +    +V  +   +N  AC+ ++  + D++KDAL EL E       +D GD     TE +    +   G++K+  VL KK   +I  A          + D I     KLS  VDD   SLY      +  +++ +TL +S   +L  +   +  +S D   W  F+ KA  HN+++IQ V 
Sbjct: 1188 GLAVRAALKEALKTVLESCLGFVQTMSETLGRKFPANSHPILQSFGQIMSKCEVIKNLPKSNKLACVVLIKDQYDILKDALSELEEVKNDAFVDDFGDCVEQWTENDHQIINPSMGMIKTSIVLVKKTSITIKKAGLEESSEQFLEYDTILGNINKLSALVDDLALSLYPPLNWSE-CKQANQTLKDSLEGVLLCLSSLHFMQSEDALKWRDFVGKAVIHNFSEIQRVF 1871          
BLAST of EMLSAG00000006525 vs. C. finmarchicus
Match: gi|592779265|gb|GAXK01175303.1| (TSA: Calanus finmarchicus comp3152_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 51.2174 bits (121), Expect = 1.424e-6
Identity = 52/169 (30.77%), Postives = 80/169 (47.34%), Query Frame = 0
Query:  171 SNNLEACIKILSREKDLIKDALDELLE-------NDEGD-----TETEELARSKGSGLVKSVWVLNKKLIESIGHAS--------TDIDDITSATLKLSEYVDDYVFSLYSASEEPDSVRESAETLNESANNILDKIHQ-NPERSSDFGSWGVFLKKAFSHNYTQIQNV 318
            SN L AC+ ++  + D++KDAL EL E       +D GD     TE +    +   G++K+  VL KK   +I  A          + D I     KLS  VDD   SLY      +  +++ +TL +S   +L  +   +  +S D   W  F+ KA  HN+++IQ V
Sbjct:  205 SNKL-ACVVLIKDQYDILKDALSELEEVKNDAFVDDFGDCVEQWTENDHQIINPSMGMIKTSIVLVKKTSITIKKAGLEESSEQFLEYDTILGNINKLSALVDDLALSLYPPLNWSE-CKQANQTLKDSLEGVLLCLSSLHFMQSEDALKWRDFVGKAVIHNFSEIQRV 705          
BLAST of EMLSAG00000006525 vs. C. finmarchicus
Match: gi|592808882|gb|GAXK01145686.1| (TSA: Calanus finmarchicus comp1794398_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 2.160e+0
Identity = 23/88 (26.14%), Postives = 44/88 (50.00%), Query Frame = 0
Query:  120 GRFLREEINEFAETLIERAIDFSRLV---FQKPYPSES---IQKLGIVWDLYD--VSFSSNNLEACIKILSREKDLIKDALDELLEND 199
            G  +R  + E  +T++E  + F + +     K +P  S   ++  G+V +  +   S   +N  AC+ ++  +  ++KDAL EL  ND
Sbjct:  245 GLAVRAALKEALKTVLESCLGFVKTMSETLGKTFPVNSHPILKSFGLVMNKCEGIKSLPKSNKLACVVLMKDQYAILKDALSELEAND 508          
BLAST of EMLSAG00000006525 vs. C. finmarchicus
Match: gi|592792744|gb|GAXK01161824.1| (TSA: Calanus finmarchicus comp34645_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 3.251e+0
Identity = 19/54 (35.19%), Postives = 26/54 (48.15%), Query Frame = 0
Query:    3 SFISIQTTTNPWKLLTSPIT-----------CC-RRRFWNYHWIGKMPKAEXKL 44
            SF S +++   W+LL + IT           CC RR FW Y W   +PK+   L
Sbjct: 2057 SFCSFESSRLFWRLLIACITATDLSFTLRRCCCLRRSFWTYSWTKFIPKSMKNL 2218          
BLAST of EMLSAG00000006525 vs. C. finmarchicus
Match: gi|592796398|gb|GAXK01158170.1| (TSA: Calanus finmarchicus comp66707_c6_seq4 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 6.695e+0
Identity = 23/59 (38.98%), Postives = 31/59 (52.54%), Query Frame = 0
Query:   47 NAARLIAHLNVIKASIKEEGNEAIGASQNYDVLVHNLNVLALRLSNGD--EDLSDTIEK 103
            N +RL   L   K  IK+     IGA   YD+LVH  N+ +L  S+G   +   DTIE+
Sbjct:   51 NKSRLCKTLE--KVMIKDTSVTDIGA---YDLLVHGYNIESLEFSHGSFMKQFLDTIEQ 212          
BLAST of EMLSAG00000006525 vs. C. finmarchicus
Match: gi|592796399|gb|GAXK01158169.1| (TSA: Calanus finmarchicus comp66707_c6_seq3 transcribed RNA sequence)

HSP 1 Score: 30.8018 bits (68), Expect = 6.761e+0
Identity = 23/59 (38.98%), Postives = 31/59 (52.54%), Query Frame = 0
Query:   47 NAARLIAHLNVIKASIKEEGNEAIGASQNYDVLVHNLNVLALRLSNGD--EDLSDTIEK 103
            N +RL   L   K  IK+     IGA   YD+LVH  N+ +L  S+G   +   DTIE+
Sbjct:   51 NKSRLCKTLE--KVMIKDTSVTDIGA---YDLLVHGYNIESLEFSHGSFMKQFLDTIEQ 212          
BLAST of EMLSAG00000006525 vs. C. finmarchicus
Match: gi|592796400|gb|GAXK01158168.1| (TSA: Calanus finmarchicus comp66707_c6_seq2 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 8.832e+0
Identity = 22/59 (37.29%), Postives = 31/59 (52.54%), Query Frame = 0
Query:   47 NAARLIAHLNVIKASIKEEGNEAIGASQNYDVLVHNLNVLALRLSNGD--EDLSDTIEK 103
            N +RL   L   K  IK+     +GA   YD+LVH  N+ +L  S+G   +   DTIE+
Sbjct:  510 NKSRLCKTLE--KVMIKDTSVTDVGA---YDLLVHGYNIESLEFSHGSFMKQFLDTIEQ 671          
BLAST of EMLSAG00000006525 vs. C. finmarchicus
Match: gi|592796401|gb|GAXK01158167.1| (TSA: Calanus finmarchicus comp66707_c6_seq1 transcribed RNA sequence)

HSP 1 Score: 30.4166 bits (67), Expect = 8.864e+0
Identity = 22/59 (37.29%), Postives = 31/59 (52.54%), Query Frame = 0
Query:   47 NAARLIAHLNVIKASIKEEGNEAIGASQNYDVLVHNLNVLALRLSNGD--EDLSDTIEK 103
            N +RL   L   K  IK+     +GA   YD+LVH  N+ +L  S+G   +   DTIE+
Sbjct:  510 NKSRLCKTLE--KVMIKDTSVTDVGA---YDLLVHGYNIESLEFSHGSFMKQFLDTIEQ 671          
BLAST of EMLSAG00000006525 vs. L. salmonis peptides
Match: EMLSAP00000006525 (pep:novel supercontig:LSalAtl2s:LSalAtl2s357:395548:396760:1 gene:EMLSAG00000006525 transcript:EMLSAT00000006525 description:"maker-LSalAtl2s357-augustus-gene-4.13")

HSP 1 Score: 669.078 bits (1725), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query:    1 APSFISIQTTTNPWKLLTSPITCCRRRFWNYHWIGKMPKAEXKLDGNAARLIAHLNVIKASIKEEGNEAIGASQNYDVLVHNLNVLALRLSNGDEDLSDTIEKIIRFASSLVVSGSIIEGRFLREEINEFAETLIERAIDFSRLVFQKPYPSESIQKLGIVWDLYDVSFSSNNLEACIKILSREKDLIKDALDELLENDEGDTETEELARSKGSGLVKSVWVLNKKLIESIGHASTDIDDITSATLKLSEYVDDYVFSLYSASEEPDSVRESAETLNESANNILDKIHQNPERSSDFGSWGVFLKKAFSHNYTQIQNVINEIDMNKKLKL 330
            APSFISIQTTTNPWKLLTSPITCCRRRFWNYHWIGKMPKAEXKLDGNAARLIAHLNVIKASIKEEGNEAIGASQNYDVLVHNLNVLALRLSNGDEDLSDTIEKIIRFASSLVVSGSIIEGRFLREEINEFAETLIERAIDFSRLVFQKPYPSESIQKLGIVWDLYDVSFSSNNLEACIKILSREKDLIKDALDELLENDEGDTETEELARSKGSGLVKSVWVLNKKLIESIGHASTDIDDITSATLKLSEYVDDYVFSLYSASEEPDSVRESAETLNESANNILDKIHQNPERSSDFGSWGVFLKKAFSHNYTQIQNVINEIDMNKKLKL
Sbjct:    1 APSFISIQTTTNPWKLLTSPITCCRRRFWNYHWIGKMPKAEXKLDGNAARLIAHLNVIKASIKEEGNEAIGASQNYDVLVHNLNVLALRLSNGDEDLSDTIEKIIRFASSLVVSGSIIEGRFLREEINEFAETLIERAIDFSRLVFQKPYPSESIQKLGIVWDLYDVSFSSNNLEACIKILSREKDLIKDALDELLENDEGDTETEELARSKGSGLVKSVWVLNKKLIESIGHASTDIDDITSATLKLSEYVDDYVFSLYSASEEPDSVRESAETLNESANNILDKIHQNPERSSDFGSWGVFLKKAFSHNYTQIQNVINEIDMNKKLKL 330          
BLAST of EMLSAG00000006525 vs. Select Arthropod Genomes
Match: gb|KFM80555.1| (Cyclin-D1-binding protein 1-like protein, partial [Stegodyphus mimosarum])

HSP 1 Score: 58.5362 bits (140), Expect = 8.193e-9
Identity = 56/236 (23.73%), Postives = 98/236 (41.53%), Query Frame = 0
Query:  119 EGRFLREEINEFAETLIERAIDFSRLVFQKPYPSESIQKLGIVWDLYDV--SFSSNNLEACIKILSREKDLIKDALDELLENDEGDTETEELARS-------------------------KGSGLVKSVWVLNKKLIESIGHAS--------TDIDDITSATLKLSEYVDDYVFSLYSASEEPDSVRESAETLNESANNILDKIHQNPERSSDFGSWGVFLKKAFSHNYTQIQNVI 319
            +GR L +EI  +A  ++    D       K      +Q +G VW+  +   +   +N +A + +   E D+++DA  ELL+  E + E  +L  S                           SGLVK+     KK + +I            +++D I       S  VDD+V SLY       +VR  A  +  ++ ++L  +  +   S    +W  FL+KA  HN+ +I +++
Sbjct:  100 KGRTLHKEIRLYALYVLRAIKDLC--TAAKNQSRRQLQNVGNVWEKCEAVENLPKDNRDAVLALCQEEHDMVQDASQELLDAYENEDEMPDLEFSLVTPRNGIRIPPVRTWTDSDRNVILPCSGLVKATKACIKKTLHAISERGDGNDERSISELDGIAEIVRSSSALVDDFVLSLYPPVNH-SAVRHQASLVRTNSKDLLTYVGNSHFFSEADAAWIEFLRKAIDHNWVKINDMV 332          
BLAST of EMLSAG00000006525 vs. nr
Match: gi|290561100|gb|ADD37952.1| (Cyclin-D1-binding protein 1 homolog [Lepeophtheirus salmonis])

HSP 1 Score: 581.252 bits (1497), Expect = 0.000e+0
Identity = 291/294 (98.98%), Postives = 292/294 (99.32%), Query Frame = 0
Query:   37 MPKAEXKLDGNAARLIAHLNVIKASIKEEGNEAIGASQNYDVLVHNLNVLALRLSNGDEDLSDTIEKIIRFASSLVVSGSIIEGRFLREEINEFAETLIERAIDFSRLVFQKPYPSESIQKLGIVWDLYDVSFSSNNLEACIKILSREKDLIKDALDELLENDEGDTETEELARSKGSGLVKSVWVLNKKLIESIGHASTDIDDITSATLKLSEYVDDYVFSLYSASEEPDSVRESAETLNESANNILDKIHQNPERSSDFGSWGVFLKKAFSHNYTQIQNVINEIDMNKKLKL 330
            MPKAE KLDGNAARLIAHLNVIKASIKEEGNEAIGASQNYDVLVHNLNVLALRLSNGDEDLSDTIEKIIRFASSLVVSGSIIEGRFLREEINEFAETLIERAIDFSRLVFQKPYPSESIQKLGIVWDLYDVSFSSNNLEACIKILSREKDLIKDALDELLENDEGDTETEELARSKGSGLVKSVWVLNKKLIESIGHASTDIDDITSA+LKLSEYVDDYVFSLYSASEEPDSVRESAE LNESANNILDKIHQNPERSSDFGSWGVFLKKAFSHNYTQIQNVINEIDMNKKLKL
Sbjct:    1 MPKAEVKLDGNAARLIAHLNVIKASIKEEGNEAIGASQNYDVLVHNLNVLALRLSNGDEDLSDTIEKIIRFASSLVVSGSIIEGRFLREEINEFAETLIERAIDFSRLVFQKPYPSESIQKLGIVWDLYDVSFSSNNLEACIKILSREKDLIKDALDELLENDEGDTETEELARSKGSGLVKSVWVLNKKLIESIGHASTDIDDITSASLKLSEYVDDYVFSLYSASEEPDSVRESAEILNESANNILDKIHQNPERSSDFGSWGVFLKKAFSHNYTQIQNVINEIDMNKKLKL 294          
BLAST of EMLSAG00000006525 vs. nr
Match: gi|676450551|ref|XP_009052415.1| (hypothetical protein LOTGIDRAFT_214465 [Lottia gigantea] >gi|556108270|gb|ESO96922.1| hypothetical protein LOTGIDRAFT_214465 [Lottia gigantea])

HSP 1 Score: 65.855 bits (159), Expect = 1.144e-8
Identity = 77/263 (29.28%), Postives = 118/263 (44.87%), Query Frame = 0
Query:   95 EDLSDTIEKIIRFASSLVVSGSIIEGRFLREEINEFAETLIERAIDFSRLVFQKPYPSESIQKLGIVWDLYDV--SFSSNNLEACIKILSREKDLIKDALDELLE-----------NDEGD-----------TETEELARSKGSGLVKSVWVLNKK---LIESIGHASTD-----IDDITSATLKLSEYVDDYVFSLYSASEEPDSVRESAETLNESANNILDKIHQNPERSSDFGSWGVFLKKAFSHNYTQIQNVINEIDMN 325
            E L   IEK I    S   S    +G  LR+E++     ++ER  +   +V  K   SE +Q  G+VW+  D       +N EA + I+ +  DL+KDAL E+ +           ND  D           +E+++   S G GL+K+V    KK   +I++ G+ + +     +DDI     KLS  VD+    LY     P SV+   + L+ S ++IL  +  +   SS    W  FL KA  HN  +I   +   D N
Sbjct:   37 ETLVSGIEKSILAMVSYYYSLPKSQGLTLRKELHTKVIQVVERVQNLVEIV-SKYSGSERLQSTGLVWEETDDFDDLPKDNREAALFIIEQTTDLVKDALQEIEQALELGGEDDYLNDILDANEPRNNADEWSESDKTVISTGMGLIKTVKSTLKKTRDVIKTNGNCNCENNISQLDDICDYVKKLSCIVDEMTIVLYPPIVIP-SVQTKVDLLDSSISSILQILKNSHVTSSGDEKWIEFLYKAKQHNLDKITEALTMNDHN 297          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006525 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006525 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592779266|gb|GAXK01175302.1|1.680e-826.64TSA: Calanus finmarchicus comp3152_c0_seq1 transcr... [more]
gi|592779265|gb|GAXK01175303.1|1.424e-630.77TSA: Calanus finmarchicus comp3152_c0_seq2 transcr... [more]
gi|592808882|gb|GAXK01145686.1|2.160e+026.14TSA: Calanus finmarchicus comp1794398_c0_seq1 tran... [more]
gi|592792744|gb|GAXK01161824.1|3.251e+035.19TSA: Calanus finmarchicus comp34645_c0_seq1 transc... [more]
gi|592796398|gb|GAXK01158170.1|6.695e+038.98TSA: Calanus finmarchicus comp66707_c6_seq4 transc... [more]
gi|592796399|gb|GAXK01158169.1|6.761e+038.98TSA: Calanus finmarchicus comp66707_c6_seq3 transc... [more]
gi|592796400|gb|GAXK01158168.1|8.832e+037.29TSA: Calanus finmarchicus comp66707_c6_seq2 transc... [more]
gi|592796401|gb|GAXK01158167.1|8.864e+037.29TSA: Calanus finmarchicus comp66707_c6_seq1 transc... [more]
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BLAST of EMLSAG00000006525 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000065250.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s357:39554... [more]
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BLAST of EMLSAG00000006525 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006525 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 1
Match NameE-valueIdentityDescription
gb|KFM80555.1|8.193e-923.73Cyclin-D1-binding protein 1-like protein, partial ... [more]
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BLAST of EMLSAG00000006525 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 2
Match NameE-valueIdentityDescription
gi|290561100|gb|ADD37952.1|0.000e+098.98Cyclin-D1-binding protein 1 homolog [Lepeophtheiru... [more]
gi|676450551|ref|XP_009052415.1|1.144e-829.28hypothetical protein LOTGIDRAFT_214465 [Lottia gig... [more]
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BLAST of EMLSAG00000006525 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s357supercontigLSalAtl2s357:395548..396760 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s357-augustus-gene-4.13
Biotypeprotein_coding
EvidenceIEA
NoteCyclin-D1-binding protein 1 homolog [Lepeophtheirus salmonis]
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006525 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006525EMLSAT00000006525-702372Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s357:395548..396760+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006525-689291 ID=EMLSAG00000006525-689291|Name=EMLSAG00000006525|organism=Lepeophtheirus salmonis|type=gene|length=1213bp|location=Sequence derived from alignment at LSalAtl2s357:395548..396760+ (Lepeophtheirus salmonis)
GCGCCCTCTTTCATTTCTATCCAAACAACAACCAATCCGTGGAAATTATT GACGTCCCCGATCACATGCTGTAGACGTAGATTTTGGAATTATCATTGGA TTGGCAAAATGCCGAAGGCAGAGGMGAAGTTGGATGGAAATGCTGCTAGA TTAATAGCTCATCTTAATGTCATTAAAGCATCAATTAAGGAAGAAGGGAA TGAGGCTATTGGCGCATCTCAGAACTACGATGTCCTAGTTCATAATCTTA ATGTTTTAGCGTTGAGACTATCTAATGGAGATGAGGATTTGAGTGATACG ATTGAGAAAATAATAAGATTTGCCTCTTCTCTCGTAGTATCGGGATCAAT CATTGAGGGTCGTTTTCTACGAGAGGAAATCAATGAATTCGCTGAGACCC TTATTGGTTTGTGACTTATTTTGTACGATCATTACTAGTTAACTATGATA GCTTATTTCTTCATTATTTTCCTTAAACAGAAAGAGCAATTGACTTCTCT CGGTTAGTCTTCCAAAAACCCTACCCGTCAGAATCCATTCAAAAACTTGG TATAGTGTGGGACCTCTATGATGTCTCATTTTCCTCTAATAATCTGGAAG CTTGCATTAAAATTCTATCGCGTGAAAAGGATCTAATAAAAGATGCATTG GATGAGTTATTAGAAAATGATGAAGGAGATACTGAAACCGAGGAACTTGC ACGATCCAAAGGTAGTGGTCTTGTTAAAAGTGTTTGGGTCTTGAATAAAA AACTAATTGAGTCTATTGGACACGCCTCCACGGATATTGATGACATTACG TCAGCTACATTAAAATTAAGTGAATATGTGGATGACTATGTGTTTTCCTT GTATTCTGCATCAGAAGAACCAGACTCCGTAAGGGAATCAGCAGAAACTC TTAATGAATCTGCCAATAATATACTTGACAAGATTCATCAAAACCCTGAG CGCTCTAGTGATTTTGGGTCTTGGGGTGTATTTTTAAAGAAGGCTTTTTC TCATAATTATACGCAGATTCAAAATGTTATCAATGAAATTGATATGAATA AAAAGTTAAAGTTATAATATATCTAGAATTGTTATGTTTTTTTTTTAAAT TCCTTGCTGTAATTGGCCAACCAATTAACAAATGTCACTTCTTTAAACTA AATATAAAATGTACGCCTGAAATATTCATACTTATTGTAATAAAATACAT AATATATATAAAC
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