EMLSAG00000006865, EMLSAG00000006865-689631 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006865
Unique NameEMLSAG00000006865-689631
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000006865 vs. C. finmarchicus
Match: gi|592839946|gb|GAXK01117598.1| (TSA: Calanus finmarchicus comp3618961_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 2.084e-1
Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = 0
Query:   63 LVSSGFNGSNSATPKPYMETDI 84
            ++SS FN SNS +P+P +ET+I
Sbjct:  215 VLSSSFNKSNSCSPQPILETNI 280          
BLAST of EMLSAG00000006865 vs. L. salmonis peptides
Match: EMLSAP00000006865 (pep:novel supercontig:LSalAtl2s:LSalAtl2s388:465354:469199:1 gene:EMLSAG00000006865 transcript:EMLSAT00000006865 description:"snap_masked-LSalAtl2s388-processed-gene-3.4")

HSP 1 Score: 168.318 bits (425), Expect = 1.905e-55
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 MKTYDLDVFKFDQIYVLSMISENETTPPLIIVEKELTPKTKKKKPPLMPKPTLHKLGAIRKTLVSSGFNGSNSATPKPYMETDI 84
            MKTYDLDVFKFDQIYVLSMISENETTPPLIIVEKELTPKTKKKKPPLMPKPTLHKLGAIRKTLVSSGFNGSNSATPKPYMETDI
Sbjct:    1 MKTYDLDVFKFDQIYVLSMISENETTPPLIIVEKELTPKTKKKKPPLMPKPTLHKLGAIRKTLVSSGFNGSNSATPKPYMETDI 84          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006865 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006865 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592839946|gb|GAXK01117598.1|2.084e-154.55TSA: Calanus finmarchicus comp3618961_c0_seq1 tran... [more]
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BLAST of EMLSAG00000006865 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000068651.905e-55100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s388:46535... [more]
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BLAST of EMLSAG00000006865 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006865 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006865 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006865 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s388supercontigLSalAtl2s388:465354..469199 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s388-processed-gene-3.4
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006865 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006865EMLSAT00000006865-702712Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s388:465354..469199+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006865-689631 ID=EMLSAG00000006865-689631|Name=EMLSAG00000006865|organism=Lepeophtheirus salmonis|type=gene|length=3846bp|location=Sequence derived from alignment at LSalAtl2s388:465354..469199+ (Lepeophtheirus salmonis)
ATGAAAACTTATGATCTTGATGTGTTTAAATTTGATCAAATATATGTACT CTCTATGAGTGTTTAAAAAAACTAATAGTCACAGATGTTAATATACTACT ATATTATATGTAGATTACGGACATTGGTTTATGTACAAATTTTATGATCA AAGTAAGGCCATAATAGACTTTGAGCTTTTTTATAACATTACATTCTATA TGTTATGTGCCAATACTATGTGATATGCGGGTATACAACAGGGTGCTCTA TTAAAATCTGAACACTTTGAATTTTAAACTTCAACAAAATATAGTTTATT ACTTAACAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAA TAGATAAAATAGATAAATAGATATGTGTCTCAGCTCTCTTAATTATTAAT GTAACCGCCCTTAGTGGAAAGGATGGGTTCCAGGCGTCGGCAGTGGAAGG CTTAACACTCGCTGTGGRTGKAGTCTTTTGTCATGGTGTCTCAGAGCTGG TTGACAGTGGRTTTAAGGGCTTCGGTGTTTGGATATGACAGACACTACAG GCCTTCCCCTTGTCACCTAATATGTGATTGGCATCAGGGCCGTAGGGGTT CAAAAGTCTCATTCACAATTTTGGATTGAAAATCTCCAACCTGTAAATAC TACCTAGATAGAATTAAAATTCTGGAGCCACTCAACTTAAAGTATGACTC TCAAAAACGAAGTCAAACTGACTATTACGTATTTTTTAGGAATCCAAGAT ATTAGTGTATACGTAAATTAATCTAAAGGTGTTCATAGATTAATTAATTA TTTCCTGGACGGCACTTTAAATGAAATATGTGTTCATATTATATAAATAT TCAAATGAAAAGGAATTAATTAATTATTTATACAATAATAAAAGAATTCT CTGATTATAAAGACTCCTTAATGTGATTAATAAGAAATTTGATCTTACGT AAGTACGTGTATTAAATGTACTTAATTGTTATTCTTCCTGATTTTATATT CATGCCTTGTACAAGCTGTAAGTAGAGAGATAAAGTTCATAGAGTGATGA TGTGAAGAAGTTRTTGACGCTGTCAAAAAAGAAGAAATAGTTGATCAAAA TATTCGAGTTAGGTATAATAAAAACTATTGACAAACTAAGGGGATTCCAA AAAAAAATATCGATGCGATTCTACTAAACATGTGGAATAAAAATGTCACA CTAAAAAAATTGTTGGTCAATGTTTTACTTGATCGAAAAGGCTATAAAAC ATATTATTAAAAAATAATAATGTCTGTTTGAGTCAATGTCGGTGACATTC AAAATACTTGAGTAGGAGTCTGTCATTTTATGTAGCAACTCCGAAGCCCA GCTTGCAACAACTGTTTTTTTTTTCTTCATTACAAACTACTCAACTCTAG TAATAACCCATAGCTCAGATGTATCCATTCATTCATCAAAGTGTGAGTAC TCCATGTATTAAGGAGTTGGCTATCAAAATTGGACAACAGATTTTTTTCT CCATTAGCTACTTTTTGTGTGATTGGATCATTTAAAATATCAGAGCAAAT ATCGAATACAGACCATACAGATACTGGATTTTGTTCCTGATCTACCGTTT TTCCATTTTGATTCAATAGATCAGCAAAAAATTTTCTTTATAATAATGTG TTCTACATATATTAATTACATTTACTATATAGATTTTCGAATTTTTTTAA ATAAATTTTATTCCTTTCTAGTTTCAGAGAATGAAACAACGCCTCCATTG ATCATTGTAGAAAAGGAATTAACGCCCAAAACAAAGAAAAAGAAACCACC ACTCATGCCAAAACCAACACTTCATAAGCTTGGAGCCATTCGAAAAACTT TAGTCAGTAGTGGATTCAATGGAAGCAACAGTGCTACTCCTAAGCCATAT ATGGAAACGGATATTTAGTTTTATGAAGGAGATACGAGTAATGCAAACAT GTATTAGAGACCTTAGAGCTTAATACCCGGTTCAGGTAAAGTCACCAGCT ACATTTTCGACGAATGGATATTTTTCTGCAGAAAAAATTTGCTCAATTTT TCTTCTATCATAGTATTATCTTAATAAAATCTCATTTGAGTCAAGAAGTA TAAGGATCAAGCGGTAAAGAACATTGCAGGGGCGTCTGCCGGGTATAGAC TGGATARGGCTGTAACCCCCCTCCCCAATTAAGGAATTTTTGCTTTTTAC TATACATTTTTTTCGTCATTCGGGGAAATTATGGACAGAGTAAAAAATTT AATTAATTAATTTTTTTCAAAAAAATTAATTTTTGTAAATAGCTGTAGAT ATTTGTTGTTTTTTTTTTTACAAAAAGTTTCATATTTAAAATTCCGTTCC CATGAATTTTTTCCAAAAATTTAATTTTATATGAATACCAAGAAATTTAG GAATTTTTTTCCAATGAATTTAACGTTTCAAATTTCATTTTGATTTCTTT AAAATTAGAATTTTAATTTTCAAAATTTTGACAAAAAATTTAATTTGTTG TGAATAACCATGGATTCTTTAAAAACTATCGACACAAGTTTAAGAATGAA TTATTTCTAGAATCTGATAATTAGTTGTAAAACCTACCAATAAATGCATA ACTAGACATAATTTTATATGATCAGATTTAGGACTTCAATTTCTGCAATT AAATTTCAATTACTTTCAAAAGACGATCTTTAGACTATCACAACAATAAA TGTAAAGTTCAACACGACATCATGAGGAAATGACAAAAATTTTAAGCACC ATATTTTTTTTTTCTAGAAAAAATATATCATGGATTTTGTTTAAATCTAA AAAGATTATATATTTTTTCCAATTTATATGAGATCTGCAGGATATAGTTC ATAGCCGATGCTCATGGCTGKCCATTTTTTCTTATCAGTGTTTTGAAGCT TGATTGAACAAGGTTGCATGATAAAATCTAAGTAATGATATGTCAAACTT ATAATATAAAAGAATATATTCGGTAAATTTTCCATGCGGCAAAATATCCT TTCATCAAATTTTCACTGAAATCCTTATTCTTTAAATATATTAATTTTAA ATTATTCATAGATAAATGACATCCACATCACTGGGCATCATACGTATATT CAATCTCCTTCAGAAGTCTTAGCCAATGGACAATCAATCACCTTTAAACA TATTTGATGTATAGGACCTTGTCTAAAGAGTCAAATAAGACTACAAATCA TGTTTCTCATATCCAAGCTATTTTTCAAATCATAAACATTAATATACCAC ATTTCAAAACTCTGTATTTTTTGTAATCTTGGCAACTTTATCTTTTTTTT AATCCTAACTTTTGTGGAATTAGTTATAATAATGTACAAAATGTCAAAAA TACATAAAGCGTTTCCTAATGACGTCACCAATCAACAGGCAGGACCGCTA AACCATAATATGTGTACTAAACTTGATAGTTCTTCAAAGCAATAAACCAA ATGATGTAACGATGCCTGTTAGGTTGAGAAGATTCCTCCATCCCCCGCAA GATACGCTTTTTATGACAATAGTAATTACTTTAACATTTTCCCTTGTGAC ATATTAAACTATTCTTCCCTTCACTATTAAATTCACATTGTGGATAGTAA AAATTAAAAGAGTCCCCCCGTTGAAAAAGCTGTTAAAAAATTAAACTTAT TGGAAAAAATAATCAAAAATCCATAGTTATTCATAAAAAAACAAAAAAAA TTGGGGAAAAAATTTCAAAAATTTTATTTTCTGGTAAAAAATTCAAGTAT GAAATTTTTTACTGTAAAGTTTCAAAAATCTATAGATCTTCACAGA
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