EMLSAG00000006928, EMLSAG00000006928-689694 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000006928
Unique NameEMLSAG00000006928-689694
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
AX F262 T19_6928 female
  1. PreAdult2
normal
-Missing-
07.05.2019 - 09:00
13.06.2019 - 09:00
Homology
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592787751|gb|GAXK01166817.1| (TSA: Calanus finmarchicus comp1193_c26_seq191 transcribed RNA sequence)

HSP 1 Score: 38.1206 bits (87), Expect = 6.312e-2
Identity = 31/138 (22.46%), Postives = 57/138 (41.30%), Query Frame = 0
Query:   12 FLLLAICCQMYRGLKIIDTPRDVWTILQNSVELECIVDSTWQWCYWENLKESQKYPITMNDRSN----EDNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFS 145
            FL+  +     R  +I     D   +    +EL C +D  + +C W    ++      +N        ED     ++ +  SC +     G E+ +    G++ C +AK +  EV  S     +I + +A+PAG+ F 
Sbjct:   10 FLIFTV--AKVRAYEITGGSADTLIVAGERLELSCEIDGEYDFCSWSYSDDTWACLTNVNADGEELPCEDQERATITGTEGSCTL-----GLEDISLDDQGEFTCLVAKIEGTEVVKSV---HLINVEVAMPAGVEFG 393          
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592810278|gb|GAXK01144290.1| (TSA: Calanus finmarchicus comp1490548_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 6.099e-1
Identity = 53/270 (19.63%), Postives = 88/270 (32.59%), Query Frame = 0
Query:   32 RDVWTILQNSVELECIVDSTWQWCYWENLKESQKYPITMNDRSNE-----DNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYNNERKDVYKVIQGEEILPFDSGEVIEKTRILSTNESVCEIKDTDFQNGIFLLPLVMGNEVILNCDIDSSIAKPE----PNLSLW---------LSSPIEDQLISKVSSSFTYVPKMEDDRKRFECFSIQ--KNEFLSFEAIKSYSFPI 281
            + + T L   VEL C   S W +C WE  +  +   +       E      N  + +  +S SC +TIH    ++      G W C ++   + E    Y+       HL +                                 V+E    LS + S+ E+++ D  +              L C +D    KP+     +  LW          S+      +  VS   TY+    D+     C SIQ  + + + F   +S    I
Sbjct:  588 KTITTKLAEKVELSCFSPSPWFFCVWEGPRGDRVCALRSEIGKGEKAMCGGNKRMEIKGNSSSCTLTIHSPSMQDH-----GAWTCAVSDDRSLETIKDYR-------HLDI---------------------------------VVEGEVTLSPSISILELREGDMAD--------------LLCKVDEGFPKPDIIWGVDRELWGVLNTGSEVFSATTPGTHLMSVSQRVTYMASARDNGVNISCTSIQTERGDIIHFSQRRSIQLRI 1220          
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592882541|gb|GAXK01075834.1| (TSA: Calanus finmarchicus comp984586_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.113 bits (74), Expect = 2.965e+0
Identity = 16/42 (38.10%), Postives = 25/42 (59.52%), Query Frame = 0
Query:    1 MTFSQIKGIFTFLLLAICCQMYRGLKIIDTPRDVWTILQNSV 42
            + FS ++GI  F +  ICCQ +  L I+D   D WT+ + S+
Sbjct:   57 LRFSMLRGI-VFPVRIICCQSFGSLDILDQDVDTWTVAKRSL 179          
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592769112|gb|GAXK01185456.1| (TSA: Calanus finmarchicus comp320728_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 32.3426 bits (72), Expect = 5.411e+0
Identity = 18/57 (31.58%), Postives = 31/57 (54.39%), Query Frame = 0
Query:    9 IFTFLLLAICCQMYRGLKIIDTPRDVWTIL-QNSVELECIVDSTWQWCYWENLKESQ 64
            IF+ L+  +C        II T ++  T     +++L C  DS W++C W+++K SQ
Sbjct:  836 IFSILIQYVC-----AFNIIKTTQNAQTFYPGQTLDLVCKSDSYWEFCLWKHIKPSQ 991          
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592798675|gb|GAXK01155893.1| (TSA: Calanus finmarchicus comp4639202_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.5722 bits (70), Expect = 8.733e+0
Identity = 17/62 (27.42%), Postives = 31/62 (50.00%), Query Frame = 0
Query:   82 LLSTSSESCKITIHLDGSEERAQKYIGDWKCHLA----KTDTDEVSSSYKDEQIITLHLAVP 139
            ++   S+ C    H +G+       +  WKCH+     K   +E+S+ +  EQ+ T+HL+ P
Sbjct:  321 VVHHKSKQC*RNSHQEGTAYEKIFLLNLWKCHVCEEWKKQPCNEISNGHGCEQVSTVHLSQP 506          
BLAST of EMLSAG00000006928 vs. L. salmonis peptides
Match: EMLSAP00000006928 (pep:novel supercontig:LSalAtl2s:LSalAtl2s393:107315:110460:-1 gene:EMLSAG00000006928 transcript:EMLSAT00000006928 description:"maker-LSalAtl2s393-augustus-gene-1.19")

HSP 1 Score: 1465.29 bits (3792), Expect = 0.000e+0
Identity = 726/726 (100.00%), Postives = 726/726 (100.00%), Query Frame = 0
Query:    1 MTFSQIKGIFTFLLLAICCQMYRGLKIIDTPRDVWTILQNSVELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYNNERKDVYKVIQGEEILPFDSGEVIEKTRILSTNESVCEIKDTDFQNGIFLLPLVMGNEVILNCDIDSSIAKPEPNLSLWLSSPIEDQLISKVSSSFTYVPKMEDDRKRFECFSIQKNEFLSFEAIKSYSFPIYVMSIPSILEYPTNTQKLLKENDLDLIPISLQFYSQPPPQKNSIFWTFNDVIIKPNQTIEVENDLILRTSDVIPLKKKDSPSVFQIXLFISKGLFXSHSNISIIASIGNRLGKVNWSYDYNEDFFSSRYVVSWLSMSHFTTYLIIILLVLNLFLIGIWCTCCCCCGSICRCCLCPFLRKIPKTPESNRNFYVSVQSNEDLHCSDLSSLPEKDSSNGNDWSLLNPKTFTYEEEPSRNKVSSPPEEKWIRLKSLSHDDTQILITSTDDSKLLYIDEISVSSQNDSSKDEVDSFEKKVQSITPPPAYSSELPSQDKKIQSNIIKYPPPLPGMVENPIYEVPEMIEIEVKDQDTQTTKSFKKSIKIIPEYIPDHNIYARDRSSSTNVETSPSENKTFTLSKNYTLTGPTSYPVYSPMSISNPEKIYSDYLGSAQETSWIKKTKDEDDEE 726
            MTFSQIKGIFTFLLLAICCQMYRGLKIIDTPRDVWTILQNSVELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYNNERKDVYKVIQGEEILPFDSGEVIEKTRILSTNESVCEIKDTDFQNGIFLLPLVMGNEVILNCDIDSSIAKPEPNLSLWLSSPIEDQLISKVSSSFTYVPKMEDDRKRFECFSIQKNEFLSFEAIKSYSFPIYVMSIPSILEYPTNTQKLLKENDLDLIPISLQFYSQPPPQKNSIFWTFNDVIIKPNQTIEVENDLILRTSDVIPLKKKDSPSVFQIXLFISKGLFXSHSNISIIASIGNRLGKVNWSYDYNEDFFSSRYVVSWLSMSHFTTYLIIILLVLNLFLIGIWCTCCCCCGSICRCCLCPFLRKIPKTPESNRNFYVSVQSNEDLHCSDLSSLPEKDSSNGNDWSLLNPKTFTYEEEPSRNKVSSPPEEKWIRLKSLSHDDTQILITSTDDSKLLYIDEISVSSQNDSSKDEVDSFEKKVQSITPPPAYSSELPSQDKKIQSNIIKYPPPLPGMVENPIYEVPEMIEIEVKDQDTQTTKSFKKSIKIIPEYIPDHNIYARDRSSSTNVETSPSENKTFTLSKNYTLTGPTSYPVYSPMSISNPEKIYSDYLGSAQETSWIKKTKDEDDEE
Sbjct:    1 MTFSQIKGIFTFLLLAICCQMYRGLKIIDTPRDVWTILQNSVELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYNNERKDVYKVIQGEEILPFDSGEVIEKTRILSTNESVCEIKDTDFQNGIFLLPLVMGNEVILNCDIDSSIAKPEPNLSLWLSSPIEDQLISKVSSSFTYVPKMEDDRKRFECFSIQKNEFLSFEAIKSYSFPIYVMSIPSILEYPTNTQKLLKENDLDLIPISLQFYSQPPPQKNSIFWTFNDVIIKPNQTIEVENDLILRTSDVIPLKKKDSPSVFQIXLFISKGLFXSHSNISIIASIGNRLGKVNWSYDYNEDFFSSRYVVSWLSMSHFTTYLIIILLVLNLFLIGIWCTCCCCCGSICRCCLCPFLRKIPKTPESNRNFYVSVQSNEDLHCSDLSSLPEKDSSNGNDWSLLNPKTFTYEEEPSRNKVSSPPEEKWIRLKSLSHDDTQILITSTDDSKLLYIDEISVSSQNDSSKDEVDSFEKKVQSITPPPAYSSELPSQDKKIQSNIIKYPPPLPGMVENPIYEVPEMIEIEVKDQDTQTTKSFKKSIKIIPEYIPDHNIYARDRSSSTNVETSPSENKTFTLSKNYTLTGPTSYPVYSPMSISNPEKIYSDYLGSAQETSWIKKTKDEDDEE 726          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000006928 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006928 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 15
Match NameE-valueIdentityDescription
gi|592787751|gb|GAXK01166817.1|6.312e-222.46TSA: Calanus finmarchicus comp1193_c26_seq191 tran... [more]
gi|592810278|gb|GAXK01144290.1|6.099e-119.63TSA: Calanus finmarchicus comp1490548_c0_seq1 tran... [more]
gi|592882541|gb|GAXK01075834.1|2.965e+038.10TSA: Calanus finmarchicus comp984586_c0_seq1 trans... [more]
gi|592769112|gb|GAXK01185456.1|5.411e+031.58TSA: Calanus finmarchicus comp320728_c0_seq1 trans... [more]
gi|592798675|gb|GAXK01155893.1|8.733e+027.42TSA: Calanus finmarchicus comp4639202_c0_seq1 tran... [more]

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BLAST of EMLSAG00000006928 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000069280.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s393:10731... [more]
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BLAST of EMLSAG00000006928 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006928 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006928 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000006928 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s393supercontigLSalAtl2s393:107315..110460 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s393-augustus-gene-1.19
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000006928 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000006928EMLSAT00000006928-702775Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s393:107315..110460-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000006928-689694 ID=EMLSAG00000006928-689694|Name=EMLSAG00000006928|organism=Lepeophtheirus salmonis|type=gene|length=3146bp|location=Sequence derived from alignment at LSalAtl2s393:107315..110460- (Lepeophtheirus salmonis)
ATACAAATCATGACTTTCTCTCAAATTAAGGGAATATTCACATTTTTACT TCTGGCAATATGTTGTCAAATGTATCGAGGATTAAAAATTATAGACACTC CAAGGGATGTATGGACGATTCTACAAAATTCAGTAGAACTAGAATGTATA GTAGACTCCACTTGGCAGTGGTGCTACTGGGAAAATTTAAAAGAATCTCA AAAGTATCCCATTACTATGAACGACAGATCCAATGAGGACAATGGYAATC TACTGCTATCCACCTCATCCGAATCCTGTAAAATAACCATTCACTTGGAT GGCAGTGAAGAGAGAGCACAAAAATATATTGGAGATTGGAAATGTCATTT AGCAAAGACGGATACAGATGAAGTTTCATCATCTTACAAAGATGAACAGA TTATTACACTTCATTTAGCTGTACCTGCGGGAATTCACTTCTCAATTGAA TATAACAATGAAAGGAAAGATGTGTATAAAGTTATTCAAGGTGAGGAAAT ACTCCCATTCGACTCGGGTGAGGTTATAGAAAAGACAAGAATACTCTCTA CAAATGAATCTGTTTGTGAAATAAAAGATACAGATTTCCAAAATGGTATA TTTTTACTACCTCTTGTGATGGGAAATGAAGTGATATTAAACTGTGATAT AGATTCGTCAATTGCTAAGCCAGAACCAAATCTAAGTCTATGGCTATCCT CGCCGATAGAGGATCAATTAATTAGCAAGGTCAGTTCATCTTTCACTTAC GTTCCTAAAATGGAAGATGACAGAAAGCGGTTTGAATGTTTCTCAATTCA AAAAAACGAGTTCTTATCATTTGAAGCTATCAAGAGGTATGTTTAATGAT TAGTTAATAACATATTCCTACTTCATTAGCTCTTTATGTTCCCTTTCAAT AAAACAGCTATAGTTTTCCAATTTATGTGATGAGTATTCCATCAATTTTG GAATATCCAACAAATACTCAAAAATTATTAAAGGAAAATGATTTGGATTT AATTCCCATCAGCCTACAATTTTACTCACAACCTCCTCCTCAAAAGAATT CAATTTTCTGGACCTTCAATGATGTGATTATCAAACCAAATCAAACAATT GAGGTGGAGAATGATTTGATTTTACGAACATCTGATGTAATACCCCTGAA AAAAAAGGATTCTCCATCAGTTTTTCAAATTGWTCTTTTTATTAGTAAAG GGCTGTTTAKTAGCCATAGCAACATCAGTATAATTGCATCTATTGGCAAT AGATTGGGAAAAGTTAATTGGTCGTATGATTACAACGAAGATTTTTTTTC ATCAAGATATGTTGTTAGTTGGCTATCAATGTCACATTTTACAACGTATC TCATTATCATCCTCCTTGTATTAAACTTGTGTAAGTATTGTCAGAAGACT TTTTTCGAACCATCATGTCAATAGAGTAACGTATATATTTTTTTAAATAA CTAAATTACAATTACAATTTTTGTTCAAGTTTTGATTGGAATTTGGTGCA CCTGTTGTTGCTGTTGTGGGAGCATTTGTAGATGCTGCCTTTGCCCATTT TTGCGAAAAATTCCTAAAACCCCCGAATCTAACCGTAACTTTTATGTTAG TGTTCAAAGTAACGAGGACTTACATTGCTCTGGTTTGTAACTTTATGATT TTCAATTAAAGTGCAATTATAATTGTACTTTGTGTTTTAGATCTTTCTTC ATTGCCTGAAAAGGATAGCTCTAACGGTAATGATTGGAGTCTTTTAAATC CTAAGACGTTCACGTACGAAGAAGAGCCTTCACGAAACAAAGTATCTTCT CCTCCTGAAGAAAAATGGATCCGATTGAAATCTCTATCTCATGATGATAC TCAAATTTTAATAACTTCTACTGATGATTCAAAATTATTATATATTGATG AAATATCAGTGTCTAGTCAAAGTAATTTTTAAAAGTCTGTATTACTAGCT CTTACTTATTCATCATTTTAATTTCGTATTTTAGACGATTCATCAAAAGA TGAAGTCGACTCCTTTGAGAAGAAAGTTCAATCCATCACTCCACCTCCAG CTTATTCTTCAGAGCTTCCATCTCAAGAGTAAGCANGAGTAACTGTCAAT TTCTCAATTTATCGATTCAGCTAAGTCAAATTTGAATAATTATTAACTAC GTATACGGATCATTTTAGACTCAATATTTTTTTCTAATCCAACTCTCATT TGGTATAGTTAAGCTGTCAAGTCATCTTATATTTGAATGAAACTATTATA TTTAAACTTTTTATCAAACGTTTATCATCCTGATGATCTAATAATGTATA AATTAAATGTTGAAAACATTCATTAGTGAATTGACAAACTTATATAAAAA AAAAAAATTCTGAATAGTATTTGCATAAATTATCTACTTTTCATTATTGT TTTATGTATTAAAAAGTACTCTAACAGATGTTAGTGACCAATAACAGATT AGCTGATTAACTTGTACTTTTAGATAAAACTATATAATGCCATTATTAAA TAAGTAATTTTTATTAAATTGCATATGTAATTTTCGATCCGGACACGTAG CCATACAAGCAAAATGTCATTCAATCTTAATTACTTATGATACATAAGTA AAAAAATACAGTCAAATATAATCAAATGTAGAGTAACTTGGATTACTATT TGAACCGGTGAAATAACTGAAGAAATTCTGACAACAATAATTATTTATCT ATTTTAAAAATATAGATCCTCCACCTTTGCCAGGCATGGTCGAAAATCCT ATTTATGAAGTCCCGGAGATGATTGAAATTGAAGTCAAAGATCAGGATAC TCAAACAACTAAGTCATTTAAAAAATCAATAAAAATTATACCAGGTACAG AAAAAAAAATGTTAATATGTATATAAAATACTCAGCTGAGCTTTTATTTA GAGTACATTCCGGATCACAATATATATGCAAGGGATAGATCTTCAAGTAC GAATGTTGAGACATCTCCAAGTGAAAATAAAACATTTACTTTGAGTAAAA ATTATACTTTAACCGGACCAACCTCTTATCCTGTATATTCACCAATGAGC ATTTCAAATCCTGAAAAAATATATAGTGACTATTTAGGATCTGCTCAAGA AACAAGTTGGATCAAGAAAACTAAAGACGAGGATGATGAAGAATAA
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