EMLSAG00000006928, EMLSAG00000006928-689694 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Homology
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592787751|gb|GAXK01166817.1| (TSA: Calanus finmarchicus comp1193_c26_seq191 transcribed RNA sequence) HSP 1 Score: 38.1206 bits (87), Expect = 6.312e-2 Identity = 31/138 (22.46%), Postives = 57/138 (41.30%), Query Frame = 0 Query: 12 FLLLAICCQMYRGLKIIDTPRDVWTILQNSVELECIVDSTWQWCYWENLKESQKYPITMNDRSN----EDNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFS 145 FL+ + R +I D + +EL C +D + +C W ++ +N ED ++ + SC + G E+ + G++ C +AK + EV S +I + +A+PAG+ F Sbjct: 10 FLIFTV--AKVRAYEITGGSADTLIVAGERLELSCEIDGEYDFCSWSYSDDTWACLTNVNADGEELPCEDQERATITGTEGSCTL-----GLEDISLDDQGEFTCLVAKIEGTEVVKSV---HLINVEVAMPAGVEFG 393
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592810278|gb|GAXK01144290.1| (TSA: Calanus finmarchicus comp1490548_c0_seq1 transcribed RNA sequence) HSP 1 Score: 35.8094 bits (81), Expect = 6.099e-1 Identity = 53/270 (19.63%), Postives = 88/270 (32.59%), Query Frame = 0 Query: 32 RDVWTILQNSVELECIVDSTWQWCYWENLKESQKYPITMNDRSNE-----DNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYNNERKDVYKVIQGEEILPFDSGEVIEKTRILSTNESVCEIKDTDFQNGIFLLPLVMGNEVILNCDIDSSIAKPE----PNLSLW---------LSSPIEDQLISKVSSSFTYVPKMEDDRKRFECFSIQ--KNEFLSFEAIKSYSFPI 281 + + T L VEL C S W +C WE + + + E N + + +S SC +TIH ++ G W C ++ + E Y+ HL + V+E LS + S+ E+++ D + L C +D KP+ + LW S+ + VS TY+ D+ C SIQ + + + F +S I Sbjct: 588 KTITTKLAEKVELSCFSPSPWFFCVWEGPRGDRVCALRSEIGKGEKAMCGGNKRMEIKGNSSSCTLTIHSPSMQDH-----GAWTCAVSDDRSLETIKDYR-------HLDI---------------------------------VVEGEVTLSPSISILELREGDMAD--------------LLCKVDEGFPKPDIIWGVDRELWGVLNTGSEVFSATTPGTHLMSVSQRVTYMASARDNGVNISCTSIQTERGDIIHFSQRRSIQLRI 1220
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592882541|gb|GAXK01075834.1| (TSA: Calanus finmarchicus comp984586_c0_seq1 transcribed RNA sequence) HSP 1 Score: 33.113 bits (74), Expect = 2.965e+0 Identity = 16/42 (38.10%), Postives = 25/42 (59.52%), Query Frame = 0 Query: 1 MTFSQIKGIFTFLLLAICCQMYRGLKIIDTPRDVWTILQNSV 42 + FS ++GI F + ICCQ + L I+D D WT+ + S+ Sbjct: 57 LRFSMLRGI-VFPVRIICCQSFGSLDILDQDVDTWTVAKRSL 179
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592769112|gb|GAXK01185456.1| (TSA: Calanus finmarchicus comp320728_c0_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 5.411e+0 Identity = 18/57 (31.58%), Postives = 31/57 (54.39%), Query Frame = 0 Query: 9 IFTFLLLAICCQMYRGLKIIDTPRDVWTIL-QNSVELECIVDSTWQWCYWENLKESQ 64 IF+ L+ +C II T ++ T +++L C DS W++C W+++K SQ Sbjct: 836 IFSILIQYVC-----AFNIIKTTQNAQTFYPGQTLDLVCKSDSYWEFCLWKHIKPSQ 991
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Match: gi|592798675|gb|GAXK01155893.1| (TSA: Calanus finmarchicus comp4639202_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.5722 bits (70), Expect = 8.733e+0 Identity = 17/62 (27.42%), Postives = 31/62 (50.00%), Query Frame = 0 Query: 82 LLSTSSESCKITIHLDGSEERAQKYIGDWKCHLA----KTDTDEVSSSYKDEQIITLHLAVP 139 ++ S+ C H +G+ + WKCH+ K +E+S+ + EQ+ T+HL+ P Sbjct: 321 VVHHKSKQC*RNSHQEGTAYEKIFLLNLWKCHVCEEWKKQPCNEISNGHGCEQVSTVHLSQP 506
BLAST of EMLSAG00000006928 vs. L. salmonis peptides
Match: EMLSAP00000006928 (pep:novel supercontig:LSalAtl2s:LSalAtl2s393:107315:110460:-1 gene:EMLSAG00000006928 transcript:EMLSAT00000006928 description:"maker-LSalAtl2s393-augustus-gene-1.19") HSP 1 Score: 1465.29 bits (3792), Expect = 0.000e+0 Identity = 726/726 (100.00%), Postives = 726/726 (100.00%), Query Frame = 0 Query: 1 MTFSQIKGIFTFLLLAICCQMYRGLKIIDTPRDVWTILQNSVELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYNNERKDVYKVIQGEEILPFDSGEVIEKTRILSTNESVCEIKDTDFQNGIFLLPLVMGNEVILNCDIDSSIAKPEPNLSLWLSSPIEDQLISKVSSSFTYVPKMEDDRKRFECFSIQKNEFLSFEAIKSYSFPIYVMSIPSILEYPTNTQKLLKENDLDLIPISLQFYSQPPPQKNSIFWTFNDVIIKPNQTIEVENDLILRTSDVIPLKKKDSPSVFQIXLFISKGLFXSHSNISIIASIGNRLGKVNWSYDYNEDFFSSRYVVSWLSMSHFTTYLIIILLVLNLFLIGIWCTCCCCCGSICRCCLCPFLRKIPKTPESNRNFYVSVQSNEDLHCSDLSSLPEKDSSNGNDWSLLNPKTFTYEEEPSRNKVSSPPEEKWIRLKSLSHDDTQILITSTDDSKLLYIDEISVSSQNDSSKDEVDSFEKKVQSITPPPAYSSELPSQDKKIQSNIIKYPPPLPGMVENPIYEVPEMIEIEVKDQDTQTTKSFKKSIKIIPEYIPDHNIYARDRSSSTNVETSPSENKTFTLSKNYTLTGPTSYPVYSPMSISNPEKIYSDYLGSAQETSWIKKTKDEDDEE 726 MTFSQIKGIFTFLLLAICCQMYRGLKIIDTPRDVWTILQNSVELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYNNERKDVYKVIQGEEILPFDSGEVIEKTRILSTNESVCEIKDTDFQNGIFLLPLVMGNEVILNCDIDSSIAKPEPNLSLWLSSPIEDQLISKVSSSFTYVPKMEDDRKRFECFSIQKNEFLSFEAIKSYSFPIYVMSIPSILEYPTNTQKLLKENDLDLIPISLQFYSQPPPQKNSIFWTFNDVIIKPNQTIEVENDLILRTSDVIPLKKKDSPSVFQIXLFISKGLFXSHSNISIIASIGNRLGKVNWSYDYNEDFFSSRYVVSWLSMSHFTTYLIIILLVLNLFLIGIWCTCCCCCGSICRCCLCPFLRKIPKTPESNRNFYVSVQSNEDLHCSDLSSLPEKDSSNGNDWSLLNPKTFTYEEEPSRNKVSSPPEEKWIRLKSLSHDDTQILITSTDDSKLLYIDEISVSSQNDSSKDEVDSFEKKVQSITPPPAYSSELPSQDKKIQSNIIKYPPPLPGMVENPIYEVPEMIEIEVKDQDTQTTKSFKKSIKIIPEYIPDHNIYARDRSSSTNVETSPSENKTFTLSKNYTLTGPTSYPVYSPMSISNPEKIYSDYLGSAQETSWIKKTKDEDDEE Sbjct: 1 MTFSQIKGIFTFLLLAICCQMYRGLKIIDTPRDVWTILQNSVELECIVDSTWQWCYWENLKESQKYPITMNDRSNEDNGNLLLSTSSESCKITIHLDGSEERAQKYIGDWKCHLAKTDTDEVSSSYKDEQIITLHLAVPAGIHFSIEYNNERKDVYKVIQGEEILPFDSGEVIEKTRILSTNESVCEIKDTDFQNGIFLLPLVMGNEVILNCDIDSSIAKPEPNLSLWLSSPIEDQLISKVSSSFTYVPKMEDDRKRFECFSIQKNEFLSFEAIKSYSFPIYVMSIPSILEYPTNTQKLLKENDLDLIPISLQFYSQPPPQKNSIFWTFNDVIIKPNQTIEVENDLILRTSDVIPLKKKDSPSVFQIXLFISKGLFXSHSNISIIASIGNRLGKVNWSYDYNEDFFSSRYVVSWLSMSHFTTYLIIILLVLNLFLIGIWCTCCCCCGSICRCCLCPFLRKIPKTPESNRNFYVSVQSNEDLHCSDLSSLPEKDSSNGNDWSLLNPKTFTYEEEPSRNKVSSPPEEKWIRLKSLSHDDTQILITSTDDSKLLYIDEISVSSQNDSSKDEVDSFEKKVQSITPPPAYSSELPSQDKKIQSNIIKYPPPLPGMVENPIYEVPEMIEIEVKDQDTQTTKSFKKSIKIIPEYIPDHNIYARDRSSSTNVETSPSENKTFTLSKNYTLTGPTSYPVYSPMSISNPEKIYSDYLGSAQETSWIKKTKDEDDEE 726 The following BLAST results are available for this feature:
BLAST of EMLSAG00000006928 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000006928 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 15
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BLAST of EMLSAG00000006928 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000006928 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000006928 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000006928 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000006928 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s393:107315..110460- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000006928-689694 ID=EMLSAG00000006928-689694|Name=EMLSAG00000006928|organism=Lepeophtheirus salmonis|type=gene|length=3146bp|location=Sequence derived from alignment at LSalAtl2s393:107315..110460- (Lepeophtheirus salmonis)back to top Add to Basket
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