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Associated RNAi Experiments
Homology
BLAST of EMLSAG00000007794 vs. C. finmarchicus
Match: gi|592820406|gb|GAXK01134162.1| (TSA: Calanus finmarchicus comp462617_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 1.864e+0 Identity = 23/72 (31.94%), Postives = 35/72 (48.61%), Query Frame = 0
Query: 28 VSLVVQQILNNNSV------PVKKPSESISNS-RKDSVTNSENFEERERSLANEGEEDDSFDTEIRYPVQKP 92
+ +V ++ NSV PV+ +SI N +D TN E+ E+ + GE +D F +I YPV P
Sbjct: 14 IKQLVDSFMSGNSVVHIKDDPVRIEFDSIHNIINQDLTTNKEDIEKYD------GETNDIFAMDIPYPVHNP 211
BLAST of EMLSAG00000007794 vs. C. finmarchicus
Match: gi|592776302|gb|GAXK01178266.1| (TSA: Calanus finmarchicus comp15749_c2_seq1 transcribed RNA sequence) HSP 1 Score: 28.8758 bits (63), Expect = 8.416e+0 Identity = 22/86 (25.58%), Postives = 36/86 (41.86%), Query Frame = 0
Query: 1 MSEEVSLSNQNSTIGGGGNIKTPSITTVSLV--VQQILNNNSVPVKKPSESISN----------SRKDSVTNSENFEERERSLANE 74
E + +SN + GG PS T + + Q+ ++P+ S SRKD + + ENFE +ER + +E
Sbjct: 73 FWEAIGISNMADRMWGGVPFTIPSKTAMKYLSGAVQVKREANLPMGGHYNSRKTMDRELRGHRESRKDMMESYENFERQERRMRSE 330
BLAST of EMLSAG00000007794 vs. L. salmonis peptides
Match: EMLSAP00000007794 (pep:novel supercontig:LSalAtl2s:LSalAtl2s457:293137:300859:1 gene:EMLSAG00000007794 transcript:EMLSAT00000007794 description:"maker-LSalAtl2s457-snap-gene-3.5") HSP 1 Score: 328.561 bits (841), Expect = 5.204e-116 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query: 1 MSEEVSLSNQNSTIGGGGNIKTPSITTVSLVVQQILNNNSVPVKKPSESISNSRKDSVTNSENFEERERSLANEGEEDDSFDTEIRYPVQKPVVLNRTMSTLDADLLERQKLCSLEERRNSKEPLRDGFITHIDKDGNIKNVPVTYDEKNLSPVEDGMNGKLNG 164
MSEEVSLSNQNSTIGGGGNIKTPSITTVSLVVQQILNNNSVPVKKPSESISNSRKDSVTNSENFEERERSLANEGEEDDSFDTEIRYPVQKPVVLNRTMSTLDADLLERQKLCSLEERRNSKEPLRDGFITHIDKDGNIKNVPVTYDEKNLSPVEDGMNGKLNG
Sbjct: 1 MSEEVSLSNQNSTIGGGGNIKTPSITTVSLVVQQILNNNSVPVKKPSESISNSRKDSVTNSENFEERERSLANEGEEDDSFDTEIRYPVQKPVVLNRTMSTLDADLLERQKLCSLEERRNSKEPLRDGFITHIDKDGNIKNVPVTYDEKNLSPVEDGMNGKLNG 164
BLAST of EMLSAG00000007794 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold29_size597861-snap-gene-3.9 (protein:Tk04647 transcript:maker-scaffold29_size597861-snap-gene-3.9-mRNA-1 annotation:"g protein-activated inward rectifier potassium channel 3-like isoform x3") HSP 1 Score: 55.4546 bits (132), Expect = 8.999e-10 Identity = 27/59 (45.76%), Postives = 43/59 (72.88%), Query Frame = 0
Query: 98 TMSTLDADLLERQKLCSLEERRNSKEPLRDGFITHIDKDGNIKNVPVTYDEKNLSPVED 156
TMS++D+++LE+Q+L S +E DGFI+ IDKDGNI VPV Y+++ +SP+++
Sbjct: 101 TMSSVDSEMLEKQELTSGDEAC-------DGFISQIDKDGNILQVPVKYEDRLMSPLDE 152
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007794 vs. GO
Analysis Date: 2014-04-02 ( Blast vs. GO)
Total hits: 0
Match Name | E-value | Identity | Description | |
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BLAST of EMLSAG00000007794 vs. L. salmonis peptides
Analysis Date: 2014-05-10 ( Blastp vs. self)
Total hits: 1
Match Name | E-value | Identity | Description | |
EMLSAP00000007794 | 5.204e-116 | 100.00 | pep:novel supercontig:LSalAtl2s:LSalAtl2s457:29313... | [more] |
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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
LSalAtl2s457 | supercontig | LSalAtl2s457:293137..300859 + |
Analyses
This gene is derived from or has results from the following analyses
Properties
Property Name | Value |
Logic name | ensemblgenomes |
Description | maker-LSalAtl2s457-snap-gene-3.5 |
Biotype | protein_coding |
Evidence | IEA |
Note | Hypothetical protein |
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s457:293137..300859+ Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below. >EMLSAG00000007794-690560 ID=EMLSAG00000007794-690560|Name=EMLSAG00000007794|organism=Lepeophtheirus salmonis|type=gene|length=7723bp|location=Sequence derived from alignment at LSalAtl2s457:293137..300859+ (Lepeophtheirus salmonis) AATCAACGCAATCACTTTATACCTCATTAGTAATCCCCGCGTCAAATCCC
CGTATCATCAGAATCATAAAAGTGTAAAATCATTTTCTACAACATACAAT
AAAAAATATTATTGCAAGGAAACTATAATTTGTAATTTAATACGAGTCAC
ATCATGAGTGAGGAAGTCAGTCTATCCAATCAAAATTCCACTATTGGAGG
AGGAGGTAATATCAAAACTCCATCCATCACTACAGTCTCCCTTGTCGTAC
AACAAATCCTTAATAATAACTCAGTTCCTGTAAAGAAACCTTCGGAGTCC
ATATCAAATTCTAGAAAGGATTCTGTTACAAAGTAACTAACAGACGGCAT
TGTACCAAGAGATCCTTTTAAGTTCCATCATATTCTTAGCTAATTATAAA
AAAAAAACTTAATTTTCATTTTTTTAAAAGAGCTTGTAAAGAGCTCTTGG
TACAACAGAAACTAAACTATTATTATACTATTTGAGTTCTGAAAATTTTG
AAGAACGGGAGAGATCGTTGGCCAACGAAGGAGAGGAAGACGATAGTTTT
GATACAGAGATTCGATATCCTGTGCAAAAGCCAGTAGTTCTGAACCGAAC
AATGAGTACACTTGATGCAGATCTTCTTGAACGCCAAAAACTATGTTCGC
TGGAGGAGCGGAGGAATTCCAAAGAGCCCCTACGTGACGGATTTATCACA
CATATCGATAAAGACGGTAATATCAAAAACGTTCCAGTCACTTATGATGA
AAAAAATTTATCACCAGTAGAAGATGGAATGGTGAATTCAWTTGCTGKCT
TTGRCYGCSCGGACATTATCACAAAACCCTTTAACTTTGTGTCTGGAAAT
GTGAGGAAAGCCCGGTTCAATCCCTTTCGAAAGAAGTCGGGTCTTCTGAA
TGTTCTTGCGCGACAAGCTACACGGAATCGTATTGTGTCCAAGAATGGAA
ACATCAATACTATTTTTACATCTGAGGGAAAGGCACATCACTTTATGAAG
GATTTCTTCATATCAACCCTGGAGCTCAGTTGGACGTGGACCTTTTTCAT
GTTTGCTTTTGTATTCTTCTTCTCCTGGCTCATGTTTGCCTCAGTTTGGT
ACTTGACCTTTCTGATTCATGGAGATTTTCTACCAGAAAACAAAAGTAAT
AAAAGCTTCACTCCCTGTGTCTCTGCTATAGAGGACTTCACCTCCTGCTT
CCTGTTTTCCCTTGAGACTCAACATACTATTGGCTATGGTGGYCGGMAAG
TTGAACTTACATTTTATAAACCAGTCGTACATTTTTTGTGGTCGCTAAAT
AACTATACTTGAAATGTGCAGATAAAATTTTTTTTCTTTAAAAATATTTT
TCTCTTGGATTTTTTTAATTAATATGCTGTAGAAAATCAACTTTGTACTA
ATCAAAGATTAAAATTAAGCTGATTTATGTTTCTTATGAAAAACAGTTTT
CATGTATAAAAAAATCTGCACCGCAAAGAGTGAAAAAAAAAAGAGTTTTG
CTAAGACTTTAATATGTGTATAACTGCACAATGCACTATGTATGTATAAT
CGTACATATAATTTATGAGCACATTAAATATTTGTAATTTGATTCGTGTT
TGATTCTTTACTTGAGAAAATACAATCATGGCCTACAGCACATATTGAAT
GAAAATTCTTTCAACGCATCGGCCATATTCATTTTTAAAAAAACAAAACA
TTCTCATCCTTTAATTTAAAATCAATTTCTTACAAACTAAATAAAATGGA
AATGATTGCTCTTCAAATATTATTCAAATTCATCCTTGAATACAATGACC
TTATTGGACTCCTTCTAATCATTATTATCATTTTTTGAGACTCTTATAGT
GTCAAAATATGTTTCTGTTTATATAAGAAGAAAATTCAAATACTCTATTG
CAATTATGTTCATTTTTTTTCTAATACCATTTATTTTTCATAAGAGAAAA
GCTGAGTGATGTCTAAAATTCCATAAGTTTTGATTCAATCATTTTATTTA
AATAAATATGCTAGATCCCCCTATACGGAGTCTCAAAGTACCCTGACATT
AAATAGGAATTATATTAACTCAGATCTATTTAAATATATTTTGTGATGAA
GAATGAAAGGAAATCCCTTTCTAAATGCCTAATAATCATATTCGGTAAGT
AAGTACAAGAATATTGCCTCTTTAAGAGAGATTGAATTGGTTATTGAGTC
AGTATGTAGAGTATCAAATAACTGAATATCCGGGGCACCTAACCACAAAA
TGTTTCTTGTGGACAGTGCTTATCTATTATTAATATATCATACCTATTTA
TATATAATACAATTTACTTGTTATCTGCTTGGGCCTTATACTAATATCAA
AATATACTGACCATTTTGATTGTTGATATGATTATAAATATGTTGTTAAA
AATGATTCTTTCATATAATGGTTCAGTACGCTAAAAAAACAACCCATCAA
CTCATATATTAAATGCACATGTCTGCGATTTTTCATGTAGTTTCTTAACG
CTCGAGATGTCGATTTGGTATCAATTTTTTTGGTCTTCAAGGCCATGATG
GCCTTAGATATTATTTTTTTAGCAAATAATTTTTTGACAAACAAGTAACT
ACTCTATATAAAACAAAAATAAAGAAAGTAAAATTCTAAGAATTATTTTT
GCTTCATGTTGGTATTTATAAACTTGTTTATTTATGAAGATTATTAGGTT
TAGAATAGAAAAAAGAAAAAGGGAGAATTAGACAAATAATTTTTGACCAT
AGTTGAGTGAAGGGTATTTCAACTGTCGCTATTTTTTCTTGTCAAATCCT
TAATTAATCATGAGATTTAAGATATATTTTTAAGCTTTATTTTGTCTCAA
TAGTTGTTATGAGTATCAATGAAGAAATTGAATACTTTTTTTCCCTGTCT
TTTTATACCTGTGAATTACTAAAAAAATAATATTAAATTTTGTAAACCAT
AAATTATTAATTAATAATATTATGCAACAGTATTTTCACCCAATGGATAA
ACAGCACATNTTTTGTTGTTATTYAAGCCGTAGAACATGAAAATGACTAT
TAAAATTTTCAATACAAGAAGGTTCGGTCTTTCAATTTAAGAAAAAAATG
TATGGCTTCGATTCAGAGCCATAAATTGAAATGAGATAACTTTATTAATT
AAAATTTCAGGTAATACCAATTAATAAAAACACATTCTGGCATTCAAAAT
AATACTAATTCACTAATAATACAGTTTATACAAAAATCCATTAAAACGAT
AGATCATATATAGAGCCTTATATTGTAATTTCAATTGCTTTACACCATTA
CTAAAACTAAAGAATAAACCTTATATTTCAATTCCAAAAGATTTACTGTT
AGAAAAATTATATTTTAATTGATTTTTTCTGTTTTACTTATAATTTCCTT
CTAAAATATTTATTAAATAAGTAATTTAATAGTGTGTGAAAATATTTCGA
AATAATGGTTAATTAAGTCGATTATTAAAAAAAAAAAAAACGGAGATTAA
CTCCATATATATATTTTATATTCAATGTATTTGATTAGTTTTTATTGATT
AGAGCTAAGTAATCCAATTGACTTATTTGTATTTAATTCCTGAACTTTTC
CAACATTTTATCTTTTGAATACTGTTATATTTTTGATGAATTTTTATTAC
TTTAAATTTTCTTCTATATATGTAGTTATTTTATTTCAAAATATGGCACT
GAATCGATATTATTCTCTGAAAACGGGATTTAAAAAATAACTCTAAAATC
CAAACCTACTGCAATTGAAAATTTTAAAGGACATTTTCGCGTTCTATGGC
TAAATAAGAATAATAAATATAAGTTTTAAACAATTGTTAATGAACTATAA
ACTTCTTGTACGCCAAATTTAATATTACACTACATTTTATCGCCAGAACT
TTTAAATATGCTCCCGAAAAATGCTAGAATGTATCAGTATATTTTGCAAA
TTTTTATTCCTGGTTTGGAGAATTTAATTACATTTTTCATTTCTAAGGTG
TCCTTTAGCCTCTTAAGTAGTAATTTTAGGGGTTACTTTTACCCCAATTT
GCTAAATGCTTTAAAAAAGGATGTTTACTAAAGAAGGGTTTACCGGAAGG
CGTTATTAAAACCTGAAATTTGTTGCATAGTGTAGTTATCAAACAAGACA
TAACCTTGATGGAATAAGACATCTCTCTTTTTCATGTTCATCGTTTGGGT
AGACATCTAATAAAAACGCATGCAATTATTCTTTCAAACCTCAATAATTA
AATATATAATTTGTTGATAACATAAAAACTAATAGAGTACCATCCCCCCA
AAAATGGATAGAGGAAGTAAATAATAAATTAGGAATATACATAGAAGATT
GAGTAAAAATATAATACAAAGATGATATTACAGGGATATTTCAGTCTCTG
GGGTAGATGTAACGAAGGGATATGTATATAATATTATATATGGGAAAAAT
AAATCTTATAGGTTTTTGATCAATGCTTCTATTCATCAGAGTTTTTACTT
AATATACAGGGTGGGACAGAAAAACGTGGACTCGATAAATATCTGTAGAA
ATAGTTCAATAGTTCTTTATTTTCAAAAATAACCAAAAAATAAACGAAGT
CCCATGTGGACCTTCACAGTAAGGCAATTCATCGATTTTGTGGTATTTTC
CTTTATATTCTTCTCCAAGCTGAAGAGGAACTCCAAATCTCTCTTTAAAA
TGTCCCTCCACCTCTTGTTTTTCTTGAAGAGGTCTTCTCTGTAATTATGC
ATCTTTGCCACCTTGTAAACCTGGCTCCTAGAGGCTTTCACAATGCCCAT
AKTCCTCKCCATCCTCAACTTCAGCATCCAGTAGATCTGAGATGTTCTAC
TTTTTGGCTTTTTGCTCACTCATGATGACGAAATGTTTATAATAGTTTGT
TTATATACAAAGAATGACTGAAGCAGAATGTCAAAAAATAATCCCCAAAC
CTCTCTCTATTAATAATAAAATCTACATTTATTAACAGTCCATGTTTTGT
TTCCGAACCCTCTATATTTTATAATCTCTTTCACATTACAGATTTTAATT
TTATAAGTAGGTACAATAGGTATTTCCGAAACAAGGATTTGTATTTTTAA
AATACTTTAATCCATGTTTTTATAATCACTTTGTTGTCAATTTGGATCAG
AATTTCAATATTCCTCCCTAAATTTCATTTAATATATATATTTTTTTTTT
TATCAAATCATGTTTTTGAAGAATATAGAATTGAAATTTTTCGAGTACTG
TTATACTTTGTAGAAAGGTGTTAATTAATTTTTCCTTATAAATATCCAAA
AATGACCAGAATAATATTTTCATTTTCATCCAAATGCTGTTTATACCCAA
AAAAAATACGACTATATTTATATGAAACAATGGAATAGAAAGCAAAAGTA
TCGCAAATATGTATAATCATCCATTTGTAGGAATTTTGTCCAAGGATCAG
TCACGAAATATATTTGTTTTTTCATTTGTTTAAGAGCAAGAATGACTTCT
TCAATGCGTGAGTAATTGATCTTACAATGTCAAACCTATCTGTAATTGAT
TGTTTTCTATAAAATATAAGCATACTTCTGAAACTAGTACAACATTTTGT
AGATAGTATGTTTATTGTAGATGGATTTAAGACGGGTGATTTTTTACTCA
AATATGACCTGAAACATTCATATGAAAAGCGCATAATATTTAATTTTCAA
AAATGATCAAAAAACCAGTTTTTATACAAACAATTATTCGTAATTTGATA
TGAAATCTAAAAGGTTTTTGGTCATGGTAAAATATTGGTTACTTGTGTGA
CTCACAATTATAGTTCTACTTTTTAAGGTCAGTGTATGATTACATAGATT
TATCTTTTTTTTTATATCTCCTAGAATATTAATAAACATTGTACTTAACG
TTGAGTATATAGACAATTTTTAAAGTGATTGAATATAATTACAAAACAAA
TTAGGAAAAAAAATCATATTCTTAATAACTTATGCACTGTAAAATCCCAA
GATTCACATTTAGATAGCGCTTCTTTTTTTAATTCGCCTCATTTTCAGTC
AATACCAACCTTCAAAAGACAGCTTTCAAAATTGCTTGACAATTTGTTCC
TTAGTTTGAAAGTTATTCCGCTAAGTGTCACGCTACATCTTGGTGGAAAA
AAATACCGTTCCATCTAAGCAATGTCTTGAAAATTGCTATGGAAACTCCA
CTCCATTAATCCAAWCAAATTGAACAAAAAAAAAAAACCAACGTGATTTC
TTTTTAAAGACGGCAGTCGTCAGCCCATGCATTACATGGGACGCCAATAA
ATCTTTTAATTGTTAGAAAATAGTTCGACTTTAAGTACTGAAATTCTGTA
ATAATGAAATATATTATGGTCAAAAAAAAAAAATGTGAATAGATAAACAA
TGGAGTTTACAATATTTTAACATCCAACCTAGAGGTTTTTTTTTCTTTTC
ATAAAATAATTCAAATTAAATCTATATTACTGTTGAACTAAACTAAGAAA
ATACACTTATATATGTATTTAAAAGACTCACTATTGATGCTTTTAAAAAG
CACAAAAATAGGTGGAAAAAAAAGTACTATTCCTTTCCAAATAGAACACT
TAAAATGTATTTTTTACTCATTAAATTGCATTTTTGAAAGATTTGGAATA
TGTAATATTGTAAACTCATATTTCAAATTAATATGAAACCTTACAGATAA
TTTGTCTCTTTTTTTTTTGGTAAAGATTAGTGGGTTTTTTGCTTTAGATA
AAAGTTGATTAAAACCTGTAAGAATAAAATAATAATCAAAAAATTCCAAT
CAAAATTTTGGAAAACAATATTTGAATTGAAGCGATTTCGGTGTCGGTTC
AGCTTTATCGGTCTCGGTTCCTGTCTTGGGTCTCAGTTCTTTTTAATACA
TGATCAGTTCGGTAACAGTTTGGAAAGGGCCGTCACTAGAAAATTCGGCC
CCAGGAAATGATATTCCATACAAACAGGGCCGCAGCTACCTTATACGTAG
AGTGCATAGTACACCAAGCTCAATCAGGAGTCCTGAAAACTTGAATCAAG
AGGCCTCAGTTTAAAATGTATTAGTGTAGTTGATAACTTTGCAAAATTAA
GTTTGGAAAATCCTGGCTTAAGAAATCTTATATTAATCATATAATAGGTC
CCTAACAAGCCTAGTAGCGGATCTGCTTCCATAATCTACCCCACACTTTC
CTGTTGTACTTACACTGTCTAGTGCCTAAAACCCCTTTTCCAGATCCATG
AGAAGCTTTTAGCTATTTGGAACTTAGATAAAACTGCCTTAACCTGGCAA
CGTACAAAAATCATTGGTAAACGTTTTTGTGCCATTGCACAAAAAAAATC
AGAAAAATGACTTACTGATTAAAGTTAATTTTGTTTTTACAATGTATATT
TTCCTTTCTTTATATATTCTATATAGGAACAAAAGCACAAGAACCGAGAC
TGATAAGCAATATATTGCAATCTCGGTTCCAGTCTCAGTTCGACTTTGTC
TTTATTCAAGAACCGTTTGAACTGCTACAACCACAAGAGCTAGAGGCACA
ACCTTGACCAATACTAACCAAATTGAATTTGAGTTTTTAAGATTTTTTTT
TGTCTACTCTTATTTTTTATTTTTGACAAATAAAAAATACAGTGAGTAAA
CAAAAAGGTAAGAAGATTAATGGTATTTTCTATCTTTTTCATTATTTATT
AGAATGGAAAGCTAAATGGATAA back to top
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