EMLSAG00000007794, EMLSAG00000007794-690560 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007794
Unique NameEMLSAG00000007794-690560
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000007794 vs. C. finmarchicus
Match: gi|592820406|gb|GAXK01134162.1| (TSA: Calanus finmarchicus comp462617_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 1.864e+0
Identity = 23/72 (31.94%), Postives = 35/72 (48.61%), Query Frame = 0
Query:   28 VSLVVQQILNNNSV------PVKKPSESISNS-RKDSVTNSENFEERERSLANEGEEDDSFDTEIRYPVQKP 92
            +  +V   ++ NSV      PV+   +SI N   +D  TN E+ E+ +      GE +D F  +I YPV  P
Sbjct:   14 IKQLVDSFMSGNSVVHIKDDPVRIEFDSIHNIINQDLTTNKEDIEKYD------GETNDIFAMDIPYPVHNP 211          
BLAST of EMLSAG00000007794 vs. C. finmarchicus
Match: gi|592776302|gb|GAXK01178266.1| (TSA: Calanus finmarchicus comp15749_c2_seq1 transcribed RNA sequence)

HSP 1 Score: 28.8758 bits (63), Expect = 8.416e+0
Identity = 22/86 (25.58%), Postives = 36/86 (41.86%), Query Frame = 0
Query:    1 MSEEVSLSNQNSTIGGGGNIKTPSITTVSLV--VQQILNNNSVPVKKPSESISN----------SRKDSVTNSENFEERERSLANE 74
              E + +SN    + GG     PS T +  +    Q+    ++P+     S             SRKD + + ENFE +ER + +E
Sbjct:   73 FWEAIGISNMADRMWGGVPFTIPSKTAMKYLSGAVQVKREANLPMGGHYNSRKTMDRELRGHRESRKDMMESYENFERQERRMRSE 330          
BLAST of EMLSAG00000007794 vs. L. salmonis peptides
Match: EMLSAP00000007794 (pep:novel supercontig:LSalAtl2s:LSalAtl2s457:293137:300859:1 gene:EMLSAG00000007794 transcript:EMLSAT00000007794 description:"maker-LSalAtl2s457-snap-gene-3.5")

HSP 1 Score: 328.561 bits (841), Expect = 5.204e-116
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
Query:    1 MSEEVSLSNQNSTIGGGGNIKTPSITTVSLVVQQILNNNSVPVKKPSESISNSRKDSVTNSENFEERERSLANEGEEDDSFDTEIRYPVQKPVVLNRTMSTLDADLLERQKLCSLEERRNSKEPLRDGFITHIDKDGNIKNVPVTYDEKNLSPVEDGMNGKLNG 164
            MSEEVSLSNQNSTIGGGGNIKTPSITTVSLVVQQILNNNSVPVKKPSESISNSRKDSVTNSENFEERERSLANEGEEDDSFDTEIRYPVQKPVVLNRTMSTLDADLLERQKLCSLEERRNSKEPLRDGFITHIDKDGNIKNVPVTYDEKNLSPVEDGMNGKLNG
Sbjct:    1 MSEEVSLSNQNSTIGGGGNIKTPSITTVSLVVQQILNNNSVPVKKPSESISNSRKDSVTNSENFEERERSLANEGEEDDSFDTEIRYPVQKPVVLNRTMSTLDADLLERQKLCSLEERRNSKEPLRDGFITHIDKDGNIKNVPVTYDEKNLSPVEDGMNGKLNG 164          
BLAST of EMLSAG00000007794 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold29_size597861-snap-gene-3.9 (protein:Tk04647 transcript:maker-scaffold29_size597861-snap-gene-3.9-mRNA-1 annotation:"g protein-activated inward rectifier potassium channel 3-like isoform x3")

HSP 1 Score: 55.4546 bits (132), Expect = 8.999e-10
Identity = 27/59 (45.76%), Postives = 43/59 (72.88%), Query Frame = 0
Query:   98 TMSTLDADLLERQKLCSLEERRNSKEPLRDGFITHIDKDGNIKNVPVTYDEKNLSPVED 156
            TMS++D+++LE+Q+L S +E         DGFI+ IDKDGNI  VPV Y+++ +SP+++
Sbjct:  101 TMSSVDSEMLEKQELTSGDEAC-------DGFISQIDKDGNILQVPVKYEDRLMSPLDE 152          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007794 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007794 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592820406|gb|GAXK01134162.1|1.864e+031.94TSA: Calanus finmarchicus comp462617_c0_seq1 trans... [more]
gi|592776302|gb|GAXK01178266.1|8.416e+025.58TSA: Calanus finmarchicus comp15749_c2_seq1 transc... [more]
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BLAST of EMLSAG00000007794 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000077945.204e-116100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s457:29313... [more]
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BLAST of EMLSAG00000007794 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007794 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007794 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007794 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold29_size597861-snap-gene-3.98.999e-1045.76protein:Tk04647 transcript:maker-scaffold29_size59... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s457supercontigLSalAtl2s457:293137..300859 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s457-snap-gene-3.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007794 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007794EMLSAT00000007794-703641Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s457:293137..300859+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007794-690560 ID=EMLSAG00000007794-690560|Name=EMLSAG00000007794|organism=Lepeophtheirus salmonis|type=gene|length=7723bp|location=Sequence derived from alignment at LSalAtl2s457:293137..300859+ (Lepeophtheirus salmonis)
AATCAACGCAATCACTTTATACCTCATTAGTAATCCCCGCGTCAAATCCC CGTATCATCAGAATCATAAAAGTGTAAAATCATTTTCTACAACATACAAT AAAAAATATTATTGCAAGGAAACTATAATTTGTAATTTAATACGAGTCAC ATCATGAGTGAGGAAGTCAGTCTATCCAATCAAAATTCCACTATTGGAGG AGGAGGTAATATCAAAACTCCATCCATCACTACAGTCTCCCTTGTCGTAC AACAAATCCTTAATAATAACTCAGTTCCTGTAAAGAAACCTTCGGAGTCC ATATCAAATTCTAGAAAGGATTCTGTTACAAAGTAACTAACAGACGGCAT TGTACCAAGAGATCCTTTTAAGTTCCATCATATTCTTAGCTAATTATAAA AAAAAAACTTAATTTTCATTTTTTTAAAAGAGCTTGTAAAGAGCTCTTGG TACAACAGAAACTAAACTATTATTATACTATTTGAGTTCTGAAAATTTTG AAGAACGGGAGAGATCGTTGGCCAACGAAGGAGAGGAAGACGATAGTTTT GATACAGAGATTCGATATCCTGTGCAAAAGCCAGTAGTTCTGAACCGAAC AATGAGTACACTTGATGCAGATCTTCTTGAACGCCAAAAACTATGTTCGC TGGAGGAGCGGAGGAATTCCAAAGAGCCCCTACGTGACGGATTTATCACA CATATCGATAAAGACGGTAATATCAAAAACGTTCCAGTCACTTATGATGA AAAAAATTTATCACCAGTAGAAGATGGAATGGTGAATTCAWTTGCTGKCT TTGRCYGCSCGGACATTATCACAAAACCCTTTAACTTTGTGTCTGGAAAT GTGAGGAAAGCCCGGTTCAATCCCTTTCGAAAGAAGTCGGGTCTTCTGAA TGTTCTTGCGCGACAAGCTACACGGAATCGTATTGTGTCCAAGAATGGAA ACATCAATACTATTTTTACATCTGAGGGAAAGGCACATCACTTTATGAAG GATTTCTTCATATCAACCCTGGAGCTCAGTTGGACGTGGACCTTTTTCAT GTTTGCTTTTGTATTCTTCTTCTCCTGGCTCATGTTTGCCTCAGTTTGGT ACTTGACCTTTCTGATTCATGGAGATTTTCTACCAGAAAACAAAAGTAAT AAAAGCTTCACTCCCTGTGTCTCTGCTATAGAGGACTTCACCTCCTGCTT CCTGTTTTCCCTTGAGACTCAACATACTATTGGCTATGGTGGYCGGMAAG TTGAACTTACATTTTATAAACCAGTCGTACATTTTTTGTGGTCGCTAAAT AACTATACTTGAAATGTGCAGATAAAATTTTTTTTCTTTAAAAATATTTT TCTCTTGGATTTTTTTAATTAATATGCTGTAGAAAATCAACTTTGTACTA ATCAAAGATTAAAATTAAGCTGATTTATGTTTCTTATGAAAAACAGTTTT CATGTATAAAAAAATCTGCACCGCAAAGAGTGAAAAAAAAAAGAGTTTTG CTAAGACTTTAATATGTGTATAACTGCACAATGCACTATGTATGTATAAT CGTACATATAATTTATGAGCACATTAAATATTTGTAATTTGATTCGTGTT TGATTCTTTACTTGAGAAAATACAATCATGGCCTACAGCACATATTGAAT GAAAATTCTTTCAACGCATCGGCCATATTCATTTTTAAAAAAACAAAACA TTCTCATCCTTTAATTTAAAATCAATTTCTTACAAACTAAATAAAATGGA AATGATTGCTCTTCAAATATTATTCAAATTCATCCTTGAATACAATGACC TTATTGGACTCCTTCTAATCATTATTATCATTTTTTGAGACTCTTATAGT GTCAAAATATGTTTCTGTTTATATAAGAAGAAAATTCAAATACTCTATTG CAATTATGTTCATTTTTTTTCTAATACCATTTATTTTTCATAAGAGAAAA GCTGAGTGATGTCTAAAATTCCATAAGTTTTGATTCAATCATTTTATTTA AATAAATATGCTAGATCCCCCTATACGGAGTCTCAAAGTACCCTGACATT AAATAGGAATTATATTAACTCAGATCTATTTAAATATATTTTGTGATGAA GAATGAAAGGAAATCCCTTTCTAAATGCCTAATAATCATATTCGGTAAGT AAGTACAAGAATATTGCCTCTTTAAGAGAGATTGAATTGGTTATTGAGTC AGTATGTAGAGTATCAAATAACTGAATATCCGGGGCACCTAACCACAAAA TGTTTCTTGTGGACAGTGCTTATCTATTATTAATATATCATACCTATTTA TATATAATACAATTTACTTGTTATCTGCTTGGGCCTTATACTAATATCAA AATATACTGACCATTTTGATTGTTGATATGATTATAAATATGTTGTTAAA AATGATTCTTTCATATAATGGTTCAGTACGCTAAAAAAACAACCCATCAA CTCATATATTAAATGCACATGTCTGCGATTTTTCATGTAGTTTCTTAACG CTCGAGATGTCGATTTGGTATCAATTTTTTTGGTCTTCAAGGCCATGATG GCCTTAGATATTATTTTTTTAGCAAATAATTTTTTGACAAACAAGTAACT ACTCTATATAAAACAAAAATAAAGAAAGTAAAATTCTAAGAATTATTTTT GCTTCATGTTGGTATTTATAAACTTGTTTATTTATGAAGATTATTAGGTT TAGAATAGAAAAAAGAAAAAGGGAGAATTAGACAAATAATTTTTGACCAT AGTTGAGTGAAGGGTATTTCAACTGTCGCTATTTTTTCTTGTCAAATCCT TAATTAATCATGAGATTTAAGATATATTTTTAAGCTTTATTTTGTCTCAA TAGTTGTTATGAGTATCAATGAAGAAATTGAATACTTTTTTTCCCTGTCT TTTTATACCTGTGAATTACTAAAAAAATAATATTAAATTTTGTAAACCAT AAATTATTAATTAATAATATTATGCAACAGTATTTTCACCCAATGGATAA ACAGCACATNTTTTGTTGTTATTYAAGCCGTAGAACATGAAAATGACTAT TAAAATTTTCAATACAAGAAGGTTCGGTCTTTCAATTTAAGAAAAAAATG TATGGCTTCGATTCAGAGCCATAAATTGAAATGAGATAACTTTATTAATT AAAATTTCAGGTAATACCAATTAATAAAAACACATTCTGGCATTCAAAAT AATACTAATTCACTAATAATACAGTTTATACAAAAATCCATTAAAACGAT AGATCATATATAGAGCCTTATATTGTAATTTCAATTGCTTTACACCATTA CTAAAACTAAAGAATAAACCTTATATTTCAATTCCAAAAGATTTACTGTT AGAAAAATTATATTTTAATTGATTTTTTCTGTTTTACTTATAATTTCCTT CTAAAATATTTATTAAATAAGTAATTTAATAGTGTGTGAAAATATTTCGA AATAATGGTTAATTAAGTCGATTATTAAAAAAAAAAAAAACGGAGATTAA CTCCATATATATATTTTATATTCAATGTATTTGATTAGTTTTTATTGATT AGAGCTAAGTAATCCAATTGACTTATTTGTATTTAATTCCTGAACTTTTC CAACATTTTATCTTTTGAATACTGTTATATTTTTGATGAATTTTTATTAC TTTAAATTTTCTTCTATATATGTAGTTATTTTATTTCAAAATATGGCACT GAATCGATATTATTCTCTGAAAACGGGATTTAAAAAATAACTCTAAAATC CAAACCTACTGCAATTGAAAATTTTAAAGGACATTTTCGCGTTCTATGGC TAAATAAGAATAATAAATATAAGTTTTAAACAATTGTTAATGAACTATAA ACTTCTTGTACGCCAAATTTAATATTACACTACATTTTATCGCCAGAACT TTTAAATATGCTCCCGAAAAATGCTAGAATGTATCAGTATATTTTGCAAA TTTTTATTCCTGGTTTGGAGAATTTAATTACATTTTTCATTTCTAAGGTG TCCTTTAGCCTCTTAAGTAGTAATTTTAGGGGTTACTTTTACCCCAATTT GCTAAATGCTTTAAAAAAGGATGTTTACTAAAGAAGGGTTTACCGGAAGG CGTTATTAAAACCTGAAATTTGTTGCATAGTGTAGTTATCAAACAAGACA TAACCTTGATGGAATAAGACATCTCTCTTTTTCATGTTCATCGTTTGGGT AGACATCTAATAAAAACGCATGCAATTATTCTTTCAAACCTCAATAATTA AATATATAATTTGTTGATAACATAAAAACTAATAGAGTACCATCCCCCCA AAAATGGATAGAGGAAGTAAATAATAAATTAGGAATATACATAGAAGATT GAGTAAAAATATAATACAAAGATGATATTACAGGGATATTTCAGTCTCTG GGGTAGATGTAACGAAGGGATATGTATATAATATTATATATGGGAAAAAT AAATCTTATAGGTTTTTGATCAATGCTTCTATTCATCAGAGTTTTTACTT AATATACAGGGTGGGACAGAAAAACGTGGACTCGATAAATATCTGTAGAA ATAGTTCAATAGTTCTTTATTTTCAAAAATAACCAAAAAATAAACGAAGT CCCATGTGGACCTTCACAGTAAGGCAATTCATCGATTTTGTGGTATTTTC CTTTATATTCTTCTCCAAGCTGAAGAGGAACTCCAAATCTCTCTTTAAAA TGTCCCTCCACCTCTTGTTTTTCTTGAAGAGGTCTTCTCTGTAATTATGC ATCTTTGCCACCTTGTAAACCTGGCTCCTAGAGGCTTTCACAATGCCCAT AKTCCTCKCCATCCTCAACTTCAGCATCCAGTAGATCTGAGATGTTCTAC TTTTTGGCTTTTTGCTCACTCATGATGACGAAATGTTTATAATAGTTTGT TTATATACAAAGAATGACTGAAGCAGAATGTCAAAAAATAATCCCCAAAC CTCTCTCTATTAATAATAAAATCTACATTTATTAACAGTCCATGTTTTGT TTCCGAACCCTCTATATTTTATAATCTCTTTCACATTACAGATTTTAATT TTATAAGTAGGTACAATAGGTATTTCCGAAACAAGGATTTGTATTTTTAA AATACTTTAATCCATGTTTTTATAATCACTTTGTTGTCAATTTGGATCAG AATTTCAATATTCCTCCCTAAATTTCATTTAATATATATATTTTTTTTTT TATCAAATCATGTTTTTGAAGAATATAGAATTGAAATTTTTCGAGTACTG TTATACTTTGTAGAAAGGTGTTAATTAATTTTTCCTTATAAATATCCAAA AATGACCAGAATAATATTTTCATTTTCATCCAAATGCTGTTTATACCCAA AAAAAATACGACTATATTTATATGAAACAATGGAATAGAAAGCAAAAGTA TCGCAAATATGTATAATCATCCATTTGTAGGAATTTTGTCCAAGGATCAG TCACGAAATATATTTGTTTTTTCATTTGTTTAAGAGCAAGAATGACTTCT TCAATGCGTGAGTAATTGATCTTACAATGTCAAACCTATCTGTAATTGAT TGTTTTCTATAAAATATAAGCATACTTCTGAAACTAGTACAACATTTTGT AGATAGTATGTTTATTGTAGATGGATTTAAGACGGGTGATTTTTTACTCA AATATGACCTGAAACATTCATATGAAAAGCGCATAATATTTAATTTTCAA AAATGATCAAAAAACCAGTTTTTATACAAACAATTATTCGTAATTTGATA TGAAATCTAAAAGGTTTTTGGTCATGGTAAAATATTGGTTACTTGTGTGA CTCACAATTATAGTTCTACTTTTTAAGGTCAGTGTATGATTACATAGATT TATCTTTTTTTTTATATCTCCTAGAATATTAATAAACATTGTACTTAACG TTGAGTATATAGACAATTTTTAAAGTGATTGAATATAATTACAAAACAAA TTAGGAAAAAAAATCATATTCTTAATAACTTATGCACTGTAAAATCCCAA GATTCACATTTAGATAGCGCTTCTTTTTTTAATTCGCCTCATTTTCAGTC AATACCAACCTTCAAAAGACAGCTTTCAAAATTGCTTGACAATTTGTTCC TTAGTTTGAAAGTTATTCCGCTAAGTGTCACGCTACATCTTGGTGGAAAA AAATACCGTTCCATCTAAGCAATGTCTTGAAAATTGCTATGGAAACTCCA CTCCATTAATCCAAWCAAATTGAACAAAAAAAAAAAACCAACGTGATTTC TTTTTAAAGACGGCAGTCGTCAGCCCATGCATTACATGGGACGCCAATAA ATCTTTTAATTGTTAGAAAATAGTTCGACTTTAAGTACTGAAATTCTGTA ATAATGAAATATATTATGGTCAAAAAAAAAAAATGTGAATAGATAAACAA TGGAGTTTACAATATTTTAACATCCAACCTAGAGGTTTTTTTTTCTTTTC ATAAAATAATTCAAATTAAATCTATATTACTGTTGAACTAAACTAAGAAA ATACACTTATATATGTATTTAAAAGACTCACTATTGATGCTTTTAAAAAG CACAAAAATAGGTGGAAAAAAAAGTACTATTCCTTTCCAAATAGAACACT TAAAATGTATTTTTTACTCATTAAATTGCATTTTTGAAAGATTTGGAATA TGTAATATTGTAAACTCATATTTCAAATTAATATGAAACCTTACAGATAA TTTGTCTCTTTTTTTTTTGGTAAAGATTAGTGGGTTTTTTGCTTTAGATA AAAGTTGATTAAAACCTGTAAGAATAAAATAATAATCAAAAAATTCCAAT CAAAATTTTGGAAAACAATATTTGAATTGAAGCGATTTCGGTGTCGGTTC AGCTTTATCGGTCTCGGTTCCTGTCTTGGGTCTCAGTTCTTTTTAATACA TGATCAGTTCGGTAACAGTTTGGAAAGGGCCGTCACTAGAAAATTCGGCC CCAGGAAATGATATTCCATACAAACAGGGCCGCAGCTACCTTATACGTAG AGTGCATAGTACACCAAGCTCAATCAGGAGTCCTGAAAACTTGAATCAAG AGGCCTCAGTTTAAAATGTATTAGTGTAGTTGATAACTTTGCAAAATTAA GTTTGGAAAATCCTGGCTTAAGAAATCTTATATTAATCATATAATAGGTC CCTAACAAGCCTAGTAGCGGATCTGCTTCCATAATCTACCCCACACTTTC CTGTTGTACTTACACTGTCTAGTGCCTAAAACCCCTTTTCCAGATCCATG AGAAGCTTTTAGCTATTTGGAACTTAGATAAAACTGCCTTAACCTGGCAA CGTACAAAAATCATTGGTAAACGTTTTTGTGCCATTGCACAAAAAAAATC AGAAAAATGACTTACTGATTAAAGTTAATTTTGTTTTTACAATGTATATT TTCCTTTCTTTATATATTCTATATAGGAACAAAAGCACAAGAACCGAGAC TGATAAGCAATATATTGCAATCTCGGTTCCAGTCTCAGTTCGACTTTGTC TTTATTCAAGAACCGTTTGAACTGCTACAACCACAAGAGCTAGAGGCACA ACCTTGACCAATACTAACCAAATTGAATTTGAGTTTTTAAGATTTTTTTT TGTCTACTCTTATTTTTTATTTTTGACAAATAAAAAATACAGTGAGTAAA CAAAAAGGTAAGAAGATTAATGGTATTTTCTATCTTTTTCATTATTTATT AGAATGGAAAGCTAAATGGATAA
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