EMLSAG00000007812, EMLSAG00000007812-690578 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007812
Unique NameEMLSAG00000007812-690578
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000007812 vs. C. finmarchicus
Match: gi|592870394|gb|GAXK01087168.1| (TSA: Calanus finmarchicus comp216100_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 3.099e+0
Identity = 38/138 (27.54%), Postives = 64/138 (46.38%), Query Frame = 0 
Query:  247 LLRKTLEASKSLGKINKILSQNSVLLSQYELLPQI---DSSKI--------QVNISVTKDSI-IKFDILNLLDSDLNGEFWFLKVLFTSHFSSEQFYQVFRLPQRLPRVEPWKVHSEIPEINKHPKYIPLSIHLFLVF 372
            +L + +E SK++G + +  ++    L Q  +  Q+   DS+K+         VN+   + S+ +KF   N+ D  L G+FW LK+  +    SE+  Q   +P          V   IP     P+ +PLS+   LVF
Sbjct: 2037 ILERIVEESKTIGTLGQATAEKQEHLQQLRIFQQLLLADSAKLFLTELCVAAVNMFSNQKSLQLKFK--NVSDFKLLGKFWSLKLDIS--LLSEKCTQSKTVPLPPSFSGQDTVSCHIPLAAMAPEELPLSVSSHLVF 2438
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BLAST of EMLSAG00000007812 vs. C. finmarchicus
Match: gi|592870395|gb|GAXK01087167.1| (TSA: Calanus finmarchicus comp216100_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.4982 bits (75), Expect = 3.255e+0
Identity = 38/138 (27.54%), Postives = 64/138 (46.38%), Query Frame = 0 
Query:  247 LLRKTLEASKSLGKINKILSQNSVLLSQYELLPQI---DSSKI--------QVNISVTKDSI-IKFDILNLLDSDLNGEFWFLKVLFTSHFSSEQFYQVFRLPQRLPRVEPWKVHSEIPEINKHPKYIPLSIHLFLVF 372
            +L + +E SK++G + +  ++    L Q  +  Q+   DS+K+         VN+   + S+ +KF   N+ D  L G+FW LK+  +    SE+  Q   +P          V   IP     P+ +PLS+   LVF
Sbjct: 3677 ILERIVEESKTIGTLGQATAEKQEHLQQLRIFQQLLLADSAKLFLTELCVAAVNMFSNQKSLQLKFK--NVSDFKLLGKFWSLKLDIS--LLSEKCTQSKTVPLPPSFSGQDTVSCHIPLAAMAPEELPLSVSSHLVF 4078
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BLAST of EMLSAG00000007812 vs. C. finmarchicus
Match: gi|592925610|gb|GAXK01032805.1| (TSA: Calanus finmarchicus comp314818_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 31.9574 bits (71), Expect = 7.782e+0
Identity = 15/37 (40.54%), Postives = 21/37 (56.76%), Query Frame = 0 
Query:  423 GEYLHKLNSTRHVAKSLLQKSNVPFGSFTEKLVTSLP 459
            G+++        + KSL++K N P GS   KLV SLP
Sbjct:  901 GDFVESQAGREFLLKSLVEKQNEPIGSSRSKLVLSLP 1011
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BLAST of EMLSAG00000007812 vs. L. salmonis peptides
Match: EMLSAP00000007812 (pep:novel supercontig:LSalAtl2s:LSalAtl2s458:225378:230133:1 gene:EMLSAG00000007812 transcript:EMLSAT00000007812 description:"maker-LSalAtl2s458-snap-gene-2.40")

HSP 1 Score: 1268.83 bits (3282), Expect = 0.000e+0
Identity = 618/618 (100.00%), Postives = 618/618 (100.00%), Query Frame = 0 
Query:    1 MEKPRTVMEFEEHALVYALDPTKDLIFSFHEDGSLWSTQCQSNSSSWSCKKLAQLPELLGKEVYGLYLIKALEMNKEVMDGLGIESPSGTSLFIFIASNDDPIYTCMSYCNDNKVSNPFHLPNHYKNPYLEYYLYPRSNNNLLDLLKFHKKERIKDDIITYKEIVDIQTFPKAFYILDKNGCLFEYNKECNVTKIQTDVAGFCLRRALGSCIKKXGAIYTWKLPFQPEPHNDNEESEDVHNLSRPALLRKTLEASKSLGKINKILSQNSVLLSQYELLPQIDSSKIQVNISVTKDSIIKFDILNLLDSDLNGEFWFLKVLFTSHFSSEQFYQVFRLPQRLPRVEPWKVHSEIPEINKHPKYIPLSIHLFLVFTAPEKIRITSQPLSQFRLTAFDFLQVMQESKIPIQKHKTSLPITSTLESIGEYLHKLNSTRHVAKSLLQKSNVPFGSFTEKLVTSLPKELLQLNTNLSDLSEYSELRLFNHENVCYLQMISTDESQSVQLIFKNMGESMHGALKRSLVFLNKELIREGYYKEISREVIQNLRTARKKVDALYDTNDIEKHREAYLFLRSKGKGSVEVEVREQESESRARGGKELRQLNEEIEAETKRKKRFKHLNI 618
            MEKPRTVMEFEEHALVYALDPTKDLIFSFHEDGSLWSTQCQSNSSSWSCKKLAQLPELLGKEVYGLYLIKALEMNKEVMDGLGIESPSGTSLFIFIASNDDPIYTCMSYCNDNKVSNPFHLPNHYKNPYLEYYLYPRSNNNLLDLLKFHKKERIKDDIITYKEIVDIQTFPKAFYILDKNGCLFEYNKECNVTKIQTDVAGFCLRRALGSCIKKXGAIYTWKLPFQPEPHNDNEESEDVHNLSRPALLRKTLEASKSLGKINKILSQNSVLLSQYELLPQIDSSKIQVNISVTKDSIIKFDILNLLDSDLNGEFWFLKVLFTSHFSSEQFYQVFRLPQRLPRVEPWKVHSEIPEINKHPKYIPLSIHLFLVFTAPEKIRITSQPLSQFRLTAFDFLQVMQESKIPIQKHKTSLPITSTLESIGEYLHKLNSTRHVAKSLLQKSNVPFGSFTEKLVTSLPKELLQLNTNLSDLSEYSELRLFNHENVCYLQMISTDESQSVQLIFKNMGESMHGALKRSLVFLNKELIREGYYKEISREVIQNLRTARKKVDALYDTNDIEKHREAYLFLRSKGKGSVEVEVREQESESRARGGKELRQLNEEIEAETKRKKRFKHLNI
Sbjct:    1 MEKPRTVMEFEEHALVYALDPTKDLIFSFHEDGSLWSTQCQSNSSSWSCKKLAQLPELLGKEVYGLYLIKALEMNKEVMDGLGIESPSGTSLFIFIASNDDPIYTCMSYCNDNKVSNPFHLPNHYKNPYLEYYLYPRSNNNLLDLLKFHKKERIKDDIITYKEIVDIQTFPKAFYILDKNGCLFEYNKECNVTKIQTDVAGFCLRRALGSCIKKXGAIYTWKLPFQPEPHNDNEESEDVHNLSRPALLRKTLEASKSLGKINKILSQNSVLLSQYELLPQIDSSKIQVNISVTKDSIIKFDILNLLDSDLNGEFWFLKVLFTSHFSSEQFYQVFRLPQRLPRVEPWKVHSEIPEINKHPKYIPLSIHLFLVFTAPEKIRITSQPLSQFRLTAFDFLQVMQESKIPIQKHKTSLPITSTLESIGEYLHKLNSTRHVAKSLLQKSNVPFGSFTEKLVTSLPKELLQLNTNLSDLSEYSELRLFNHENVCYLQMISTDESQSVQLIFKNMGESMHGALKRSLVFLNKELIREGYYKEISREVIQNLRTARKKVDALYDTNDIEKHREAYLFLRSKGKGSVEVEVREQESESRARGGKELRQLNEEIEAETKRKKRFKHLNI 618
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007812 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007812 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592870394|gb|GAXK01087168.1|3.099e+027.54TSA: Calanus finmarchicus comp216100_c0_seq2 trans... [more]
gi|592870395|gb|GAXK01087167.1|3.255e+027.54TSA: Calanus finmarchicus comp216100_c0_seq1 trans... [more]
gi|592925610|gb|GAXK01032805.1|7.782e+040.54TSA: Calanus finmarchicus comp314818_c0_seq1 trans... [more]
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BLAST of EMLSAG00000007812 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000078120.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s458:22537... [more]
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BLAST of EMLSAG00000007812 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007812 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007812 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007812 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s458supercontigLSalAtl2s458:225378..230133 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s458-snap-gene-2.40
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007812 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007812EMLSAT00000007812-703659Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s458:225378..230133+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007812-690578 ID=EMLSAG00000007812-690578|Name=EMLSAG00000007812|organism=Lepeophtheirus salmonis|type=gene|length=4756bp|location=Sequence derived from alignment at LSalAtl2s458:225378..230133+ (Lepeophtheirus salmonis)
AAAGTCATGGGAAGGCGAGAAATGGATGGAAAAGCCGCGAACAGTCATGG
AATTTGAGGAACATGCACTTGTTTACGCATTAGATCCCACGAAAGACCTA
ATCTTTTCTTTTCATGAGGATGGATCCCTTTGGTCCACGCAATGTCAGAG
CAATTCATCTTCTTGGAGCTGCAAGAAATTAGCTCAACTCCCCGAATTGT
TAGGCAAAGGTTCTCTCATCCCCCCCCCCCCAAAAAAAAATAGACTATCC
TTTTTCAAAAATATATTTTATACTAGAGGCAATCAAAAAACTGGCTGAGA
AAATTTGAAGCCTCTCAGACTATTTTAATTTGAAAAAAAAAAGAAAGGAT
TTTTGGGTTGAAATTGACAATTTTTAAGCCTCTTGCACCATCTAAAATAT
GATGCAATGAATCAAAAGTTATACTTTATATATTTTTCAGGATGTTGTAT
ATAAGTAAAGAATATTGTGCACCTTGTTTTTAATAATTATTTAAGGGGTC
TAAGATGTGCTCAATCACTTGCTGTTTCCCTGTTTGATCAAAAATTACAT
AGCAACATTTAACCCTAATTGAAATGATAGTCACTGACATAAATGATTGA
GCACATCTTATATCCCTTAAATTATTAATTCAAAAACATGTGATTCTGCT
CAACATGCTTAACAAAATATATATTTTTTATTTTAGAAGTATATGGACTC
TATTTAATTAAAGCATTAGAAATGAATAAGGAAGTCATGGATGGATTAGG
AATTGAAAGTCCTTCTGGAACCTCATTGTTTATTTTCATCGCCAGCAATG
ATGACCCTATTTACACTTGTATGTCCTATTGCAATGATAATAAAGTCTCC
AATCCCTTTCATCTACCTAACCACTATAAAAATCCTTACTTAGAGTATTA
CTTGTACCCTAGATCCAATAATAATCTCTTAGATCTACTCAAATTTCATA
AGAAAGAAAGGATTAAAGATGATATTATAACGTACAAGGAGATTGTAGAC
ATTCAAACGTTTCCAAAGGCATTTTACATCCTTGATAAAAATGGTTGTCT
TTTCGAATATAACAAAGAGTGTAATGTAACAAAAATACAAACGGATGTTG
CAGGGTTTTGTTTGCGACGAGCCCTTGGCTCTTGTATTAAAAAAAGMGGA
GCTATCTACACCTGGAAGCTGCCATTTCAACCTGAACCACACAATGATAA
CGAAGAAAGTGAAGATGTTCACAATCTCTCTAGGCCAGCTCTTCTAAGAA
AAACCCTTGAGGCATCTAAGTCTCTTGGTAAAATAAACAAAATCCTCAGC
CAAAATTCAGTTCTCTTATCGCAGTACGAACTTCTGCCGCAGATAGATTC
ATCCAAGATCCAAGTAAATATCTCCGTCACAAAAGACAGTATTATTAAGT
TTGACATATTAAACTTATTAGATAGTGATTTAAATGGAGAGTTCTGGTTC
TTAAAAGTTCTTTTCACTTCACACTTCTCATCCGAACAGTTTTATCAAGT
ATTCCGGCTACCACAACGTTTACCGAGAGTTGAGCCATGGAAGGTGCACT
CAGAGATACCAGAGATAAATAAACATCCCAAATACATTCCTTTGAGTATA
CACTTGTTTCTAGTATTTACTGCTCCTGAAAAAATTCGAATCACAAGTCA
ACCATTATCTCAATTTCGCTTGACAGCATTTGACTTCCTTCAAGTAATGC
AAGAATCTAAAATCCCTATTCAAAAACATAAAACCTCACTCCCCATAACT
TCAACACTCGAATCCATTGGAGAATATCTTCATAAACTTAATTCCACACG
ACACGTTGCGAAATCTCTTCTTCAAAAGTCAAATGTTCCCTTTGGATCTT
TTACAGAGAAACTAGTTACGTCCCTTCCGAAGGAGTTACTTCAATTAAAT
ACTAATTTATCTGATCTCTCTGAGTATTCAGAATTAAGGCTTTTTAACCA
TGAAAATGTTTGTTACCTTCAGATGATCAGTACGGATGAGAGCCAATCCG
TACAACTGATATTCAAGAACATGGGGGAGTCTATGCATGGTGCTCTAAAG
AGAAGTCTAGTATTTCTCAACAAGGAATTGATTCGAGAGGGGTATTATAA
GGAAATTAGTAGGGAAGTCATTCAAAATCTAAGAACTGCTCGAAAAAAAG
TTGATGCGTTATATGATACGAATGATATTGAGAAGCATAGAGAGGCTTAT
TTATTTCTTCGCTCAAAGGTATCTGCATATCTTTTGTAATGGTAAAAAAA
TATTTCTTTCCCTCTGTGATATTTGAAGCCTTTCTTTTATATCAATGGAA
TAATATAATACTTATATATAACATAATTTCATTGATCTTTAAAAAGTTTT
CACCAATAAGAATACACTATTTATATTTACATAGAGTTTCTATAAAATGC
AGTATCTTAGCATAATATCCATTTTTTTTTTCCAATCCTTTTTATTCTCG
TTCTTCTCGAAGAAGTTAATTATTTTTCTATAAATTTTGTACTTATTCCT
GCAGAGTTAATTATGATACAAATTAATCATTACTGAAAAATATATATTTA
TATATCTAGCTACGAAGTTTTATGGTCGTCTGAATCACTTCTGAACTGTT
GTAAGAGAATATACCGAGTGGTCCATTAAAATCTGACCACTTTGAATTTT
AAACTTAAACAAGATATAATTAGTTAATTAACAATGGAATTTAAACCAAA
TTAATACTATAAATAGATGTGTGTATGAGCTCTCTTAATCATTAAGAGAG
CTCAGACACACAGGGCAACCAACTGCGGATGTAGTATTCTGTCATGGCGT
CCCAGTGATGGCTGYCAATGGGTTTGAGGGCCTCGGCGTTTGAATGACGG
ACACTGCAGGCCTTCTCTCGACATGCACCCAAAAGGTGTAGTCAAGGGGG
TGGCATCATGGCTGMAGGGGMTCAAAGMGTCAAAAGACTCATTCAAAAGT
GTCCTCACAAGGCTCTCTCTACCAACTTTTTTTTTTACTCTCTGGTGGAC
TTGAGGGGATTGACCTTTTTGACAGAGCCCTTCTTCCTCTACAAAGTTTC
AGACTTGCTGACAGCATAGAAGATGGTCCTGGATACACCCAACTGCTTTG
AGTACTCGAATGGAAATTCGTCGATTACGTTCAAGTGTTATTTTCTCGAA
TTGTTCGTAAGCTACAAAGCTCAGTTTTTGTTGTTGTTTTGTAACTAATT
ATTTATGCTTGAATATATCGAATTATGAATTAATTTTAATCAATTAACCT
TAATTAATTATTACATTAGTAAGTGTTCAGATTTCAATGGACCACCCAGT
ATAACATGAATTAAAAATAATAAATTCTAACTAGAATGGGCACTCGGCGA
AGCACAAAACCTTTGCCCAAAATCAAATTGAGTTATGTATCTCTATTTGT
TCCAAAGTTATGGTTGATTATGCTTTTTGAAGTATTATATTTGCATGACC
TTTGACATTGATCTCTCAAAATTTAATAGCTTCTTCGTGTGACCATATAT
AATCTACGTAACAAGTCTGATAAAAATCGATCTGTCACTTTTGCCCAAAT
CCTGGTGACTAACAATCAAACAAGGGGGGAAAAAAATCTTCGTTCAACTT
CGGCGTGATACTTGGAGACATAAGTGTAATAGCAGTGGTAGGGGGATCAA
CAAGGTCTATGCGCCCCCCAGAAAAGGAATTTGATAGGGTATTAAAAGGA
AAAGGGGACACCCAATTCGAGAAAAAGTAGTGTCAGAAATATATATATTT
ATATATAAAAGGTATCCATTCGAAATGTCTTTTAAAATGTCATGCAAAAA
ATAAAAAGGATTGTTCTTTTCTAAAAAAGTAAATAACTATTATTTCTTTA
AAAAATGTCATACATTGCATACCATTTATTAAAAAAGGACGTTTGAAAAA
ATATATCTTCTTAAATTTATTTAAGAAAAAAAAAATTATGTGGGACCCAA
GTAGAAAGAAGACATGCTGAAATATATTTTTTTATCAACAAACAAGATCC
AAAATTTCCCGTAACAAAAAGCTATTTTTTATTAAAAAATAGACTATTGA
AAGTCTGTAGAGTGGGGCGTTTTGGGAAACTTGGCGAATTTTTTTTAAAT
TTTAATTTCAAAGATATTCAGCTGTTCACAAAATTTTAAATTTTTTGAAA
AAGAAATTGAAAAATTAAATTTGAAATATAAAAAATGAAAAAAAAAATCC
AATTTTAAGTTTTTTGTAGAAAAATTTCAAAAATCCAAAGTTATTCAGAG
AATTTTTTATATTTTTTTTTTAATTAAATTTTCTAGTAAAAAGCAAGGTT
CCTTAATCGGGGAGGCCACAGCCCCTCCAGCCCACTCCCTGGTCAAAGGA
TTAATCAGAATAATTTGTTCATAGAAGTTGAAGATAATTATTTGTCCATG
AATAAATTTTTTGTATATAATCCAGAAAAGTCATTCTGGCTTCTTGAAGG
GTCACATATTAAATATTAAAGGATTTACTGGCCATCAAAAATATACAAAG
ACCACCATTATAATAAAAAAATAGAGTTTGAGAACCACTGCTGTAGTAGT
ATTTAAAGAAGAATATTAATTAATAAATTAGAGTATTAAATATAAATTAA
TAATTATAATATTAGTAGGGGAAAGGCAGTGTCGAAGTTGAGGTGAGAGA
GCAAGAGAGCGAGTCAAGAGCGAGAGGGGGAAAGGAATTGAGGCAGCTAA
ATGAAGAGATAGAGGCAGAGACAAAGAGAAAGAAACGTTTCAAACATTTA
AATATA
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