EMLSAG00000007880, EMLSAG00000007880-690646 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000007880
Unique NameEMLSAG00000007880-690646
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000007880 vs. C. finmarchicus
Match: gi|592935176|gb|GAXK01023377.1| (TSA: Calanus finmarchicus comp115547_c7_seq5 transcribed RNA sequence)

HSP 1 Score: 26.9498 bits (58), Expect = 1.510e+0
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 0 
Query:    5 LYILAYNTSCVIEDENHGSSRNLDKK 30
            L+IL  NTSCV+ED      + LD+K
Sbjct:  147 LWILE-NTSCVVED*KRPKCKGLDQK 221
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BLAST of EMLSAG00000007880 vs. C. finmarchicus
Match: gi|592935177|gb|GAXK01023376.1| (TSA: Calanus finmarchicus comp115547_c7_seq4 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 4.497e+0
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 0 
Query:    5 LYILAYNTSCVIEDENHGSSRNLDKK 30
            L+IL  NTSCV+ED      + LD+K
Sbjct:  147 LWILE-NTSCVVED*KRPKCKGLDQK 221
[Close]
BLAST of EMLSAG00000007880 vs. C. finmarchicus
Match: gi|592935178|gb|GAXK01023375.1| (TSA: Calanus finmarchicus comp115547_c7_seq3 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 4.562e+0
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 0 
Query:    5 LYILAYNTSCVIEDENHGSSRNLDKK 30
            L+IL  NTSCV+ED      + LD+K
Sbjct:  147 LWILE-NTSCVVED*KRPKCKGLDQK 221
[Close]
BLAST of EMLSAG00000007880 vs. C. finmarchicus
Match: gi|592935179|gb|GAXK01023374.1| (TSA: Calanus finmarchicus comp115547_c7_seq2 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 4.706e+0
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 0 
Query:    5 LYILAYNTSCVIEDENHGSSRNLDKK 30
            L+IL  NTSCV+ED      + LD+K
Sbjct:  147 LWILE-NTSCVVED*KRPKCKGLDQK 221
[Close]
BLAST of EMLSAG00000007880 vs. C. finmarchicus
Match: gi|592935180|gb|GAXK01023373.1| (TSA: Calanus finmarchicus comp115547_c7_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 4.754e+0
Identity = 13/26 (50.00%), Postives = 17/26 (65.38%), Query Frame = 0 
Query:    5 LYILAYNTSCVIEDENHGSSRNLDKK 30
            L+IL  NTSCV+ED      + LD+K
Sbjct:  147 LWILE-NTSCVVED*KRPKCKGLDQK 221
[Close]
BLAST of EMLSAG00000007880 vs. L. salmonis peptides
Match: EMLSAP00000007880 (pep:novel supercontig:LSalAtl2s:LSalAtl2s4646:3320:4681:-1 gene:EMLSAG00000007880 transcript:EMLSAT00000007880 description:"maker-LSalAtl2s4646-snap-gene-0.1")

HSP 1 Score: 85.8853 bits (211), Expect = 2.959e-24
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0 
Query:    1 MVSVLYILAYNTSCVIEDENHGSSRNLDKKQIRTGLDMYIS 41
            MVSVLYILAYNTSCVIEDENHGSSRNLDKKQIRTGLDMYIS
Sbjct:    1 MVSVLYILAYNTSCVIEDENHGSSRNLDKKQIRTGLDMYIS 41
The following BLAST results are available for this feature:
BLAST of EMLSAG00000007880 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007880 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 5
Match NameE-valueIdentityDescription
gi|592935176|gb|GAXK01023377.1|1.510e+050.00TSA: Calanus finmarchicus comp115547_c7_seq5 trans... [more]
gi|592935177|gb|GAXK01023376.1|4.497e+050.00TSA: Calanus finmarchicus comp115547_c7_seq4 trans... [more]
gi|592935178|gb|GAXK01023375.1|4.562e+050.00TSA: Calanus finmarchicus comp115547_c7_seq3 trans... [more]
gi|592935179|gb|GAXK01023374.1|4.706e+050.00TSA: Calanus finmarchicus comp115547_c7_seq2 trans... [more]
gi|592935180|gb|GAXK01023373.1|4.754e+050.00TSA: Calanus finmarchicus comp115547_c7_seq1 trans... [more]
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BLAST of EMLSAG00000007880 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000078802.959e-24100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s4646:3320... [more]
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BLAST of EMLSAG00000007880 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007880 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007880 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000007880 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s4646supercontigLSalAtl2s4646:3320..4681 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s4646-snap-gene-0.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000007880 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000007880EMLSAT00000007880-703727Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s4646:3320..4681-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000007880-690646 ID=EMLSAG00000007880-690646|Name=EMLSAG00000007880|organism=Lepeophtheirus salmonis|type=gene|length=1362bp|location=Sequence derived from alignment at LSalAtl2s4646:3320..4681- (Lepeophtheirus salmonis)
GACTTTTCAAAGATCTCGTGTTGGAGAGGAGCAATACAATCGATTTATTT
AATCATCTAATGGTGTCCGTTCTATACATGTAAGTGCACATTTTATAATT
GTCATATTAGGTCTAATACAAGCCATTTATCCTAAAGACTCCCATGGGTC
CTTTATTAATTGATTGGTAATTTGTTCCATATATTCCCTTGTCTATTTAT
CTATTTATTGTTTATGTTTATTTTTTTTTTGTTTTTTTGTTGTTTTTTTT
TTTAATTCTTGTTCCCGTCCTCTACTTATTTTCCTTTCCACTCTTCTTTC
TTTTCAGCTTGGCTTATAATACCTCATGTGTGATTGAAGATGAAAACCAT
GGGAGTAGTGTATGGTCAGAAACAATACTTTTGAATTGCAGTGGGAGTGA
AATAAGACTGCCTTTCAACAACATTTACAAAGGCCTCATGTTGGCAACGG
AGATATATTGAAAGACAACGTTCCACGACGGGATCAATTGTGTTTTGGTC
ACATTACGTGAACAGTGATCACATATTTATATACAGTCGAGTTACCAATA
TAACCTATGGTGGGCAATAATTTACAATAATTATGCACCAAACTTATTTA
TATTTCCCATTTCAATTACAGAGAAATTTGGATAAAAAGCAAATCCGCAC
GGGTTTAGATATGTTATAAATCCTCTTATGGTTTGATTTACTATGATGTA
TCCAAGGAAGAAATGTTCCATTATATTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTTGTCCGTGCCA
GTTCTGAGTTGACTGTTAATTGATAGCCGAACATGAATACAAGAAAGTTG
CCCCTCAAGTACATGCGTAGCTTAGGTAATCCACAGAGGCTCTTGAATGG
GACCGAATTTGCAACACTGAATAAACAATATCACTCGTCCAGGCCCANAT
GGTTTGATTTACTATGTTGTATCCAAGAAGAGACTCCCATATTATAAATC
ACCTTTCATGAGTGTAAGGGTAATAGTGGATCAATAGACTTCATGTGGAC
AAGGAGACATGTGATAAACATCGTTCCCACATGGGATTGAATATGTTTTA
ATGTCCTCCTATGTAATATATGTATTTCTATTATGTATCCTCTGTATTAA
TTTGCTATTATGTAAATAATGGAATAATTTCTTCGTTAAAAGACTCCCCA
CTTTATCATTGTCAAATATTTATACATAATTTTGTTTTCCCTTACTATCT
AGGTATATAAGT
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