EMLSAG00000008008, EMLSAG00000008008-690774 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008008
Unique NameEMLSAG00000008008-690774
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000008008 vs. C. finmarchicus
Match: gi|592777648|gb|GAXK01176920.1| (TSA: Calanus finmarchicus comp140199_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 59.3066 bits (142), Expect = 1.286e-10
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 0 
Query:   66 PWCDPKDPMGAWMNYINVRKWCAENGYTNFGPYGGVPSDD 105
            PWC+P DPMGAW+N+ NVR WC   G+    PYGG  S++
Sbjct:  599 PWCNPTDPMGAWLNFQNVRDWCIGEGFEELSPYGGSASEE 718
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BLAST of EMLSAG00000008008 vs. C. finmarchicus
Match: gi|592813914|gb|GAXK01140654.1| (TSA: Calanus finmarchicus comp1750507_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 2.281e-6
Identity = 16/36 (44.44%), Postives = 24/36 (66.67%), Query Frame = 0 
Query:   65 HPWCDPKDPMGAWMNYINVRKWCAENGYTNFGPYGG 100
            H  CD    +GA++N++  +K+C E   T+FGPYGG
Sbjct:  274 HNGCDHTTNIGAFLNFLQFKKFCVEKEVTDFGPYGG 381
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BLAST of EMLSAG00000008008 vs. C. finmarchicus
Match: gi|592831975|gb|GAXK01125569.1| (TSA: Calanus finmarchicus comp24127_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 45.0542 bits (105), Expect = 2.302e-6
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 0 
Query:   65 HPWCDPKDPMGAWMNYINVRKWCA-ENGYTNFGPYGGVP 102
            H  CD K  +G ++ +   RKWCA E G T+FGPYGGVP
Sbjct:  105 HNGCDWKTNIGGFLTFCKWRKWCADEKGVTDFGPYGGVP 221
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BLAST of EMLSAG00000008008 vs. C. finmarchicus
Match: gi|592883729|gb|GAXK01074646.1| (TSA: Calanus finmarchicus comp2285411_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 44.669 bits (104), Expect = 1.029e-5
Identity = 21/39 (53.85%), Postives = 26/39 (66.67%), Query Frame = 0 
Query:   65 HPWCDPKDPMGAWMNYINVRKWCA-ENGYTNFGPYGGVP 102
            H  CD K  +G ++ +   RKWCA E G T+FGPYGGVP
Sbjct:  302 HNGCDWKKNIGDFLTFCKWRKWCADEQGVTDFGPYGGVP 418
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BLAST of EMLSAG00000008008 vs. C. finmarchicus
Match: gi|592831976|gb|GAXK01125568.1| (TSA: Calanus finmarchicus comp24127_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 38.891 bits (89), Expect = 4.021e-4
Identity = 19/35 (54.29%), Postives = 22/35 (62.86%), Query Frame = 0 
Query:   68 CDPKDPMGAWMNYINVRKWCAENGYTNFGPYGGVP 102
            CDP   +G ++     RK CAE  YTNFG YGGVP
Sbjct:  117 CDPATNIGGFLINKLWRKKCAELEYTNFGGYGGVP 221
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BLAST of EMLSAG00000008008 vs. C. finmarchicus
Match: gi|592839732|gb|GAXK01117812.1| (TSA: Calanus finmarchicus comp1236662_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 3.376e-2
Identity = 12/32 (37.50%), Postives = 19/32 (59.38%), Query Frame = 0 
Query:   68 CDPKDPMGAWMNYINVRKWCAENGYTNFGPYG 99
            CDP   +G ++ +  ++ WC E G  +FG YG
Sbjct:  160 CDPATGVGGFLIFPMLKAWCEEAGVADFGVYG 255
[Close]
BLAST of EMLSAG00000008008 vs. C. finmarchicus
Match: gi|592839733|gb|GAXK01117811.1| (TSA: Calanus finmarchicus comp1236662_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 33.8834 bits (76), Expect = 4.328e-2
Identity = 12/32 (37.50%), Postives = 19/32 (59.38%), Query Frame = 0 
Query:   68 CDPKDPMGAWMNYINVRKWCAENGYTNFGPYG 99
            CDP   +G ++ +  ++ WC E G  +FG YG
Sbjct:  224 CDPATGVGGFLIFPLLKAWCEEAGVADFGVYG 319
[Close]
BLAST of EMLSAG00000008008 vs. L. salmonis peptides
Match: EMLSAP00000008008 (pep:novel supercontig:LSalAtl2s:LSalAtl2s475:416557:418035:1 gene:EMLSAG00000008008 transcript:EMLSAT00000008008 description:"augustus_masked-LSalAtl2s475-processed-gene-4.1")

HSP 1 Score: 220.32 bits (560), Expect = 5.470e-75
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0 
Query:    1 MKLLFVLLVTLLSVAVFLPQEGESAPXGGRGGGXRSRPRSGRQGYDNGATEGNGAEQEEEEGPEHPWCDPKDPMGAWMNYINVRKWCAENGYTNFGPYGGVPSDDQEEA 109
            MKLLFVLLVTLLSVAVFLPQEGESAPXGGRGGGXRSRPRSGRQGYDNGATEGNGAEQEEEEGPEHPWCDPKDPMGAWMNYINVRKWCAENGYTNFGPYGGVPSDDQEEA
Sbjct:    1 MKLLFVLLVTLLSVAVFLPQEGESAPXGGRGGGXRSRPRSGRQGYDNGATEGNGAEQEEEEGPEHPWCDPKDPMGAWMNYINVRKWCAENGYTNFGPYGGVPSDDQEEA 109
[Close]
BLAST of EMLSAG00000008008 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold632_size121914-snap-gene-0.24 (protein:Tk02604 transcript:maker-scaffold632_size121914-snap-gene-0.24-mRNA-1 annotation:"hypothetical protein DAPPUDRAFT_316118")

HSP 1 Score: 70.8626 bits (172), Expect = 5.285e-16
Identity = 24/39 (61.54%), Postives = 33/39 (84.62%), Query Frame = 0 
Query:   67 WCDPKDPMGAWMNYINVRKWCAENGYTNFGPYGGVPSDD 105
            WC+P  PMGAW+N+ N++ WCA++G+T FGPYGGVP+ D
Sbjct:  313 WCNPIKPMGAWLNFRNMKIWCADHGFTKFGPYGGVPTKD 351
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008008 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008008 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 7
Match NameE-valueIdentityDescription
gi|592777648|gb|GAXK01176920.1|1.286e-1055.00TSA: Calanus finmarchicus comp140199_c1_seq1 trans... [more]
gi|592813914|gb|GAXK01140654.1|2.281e-644.44TSA: Calanus finmarchicus comp1750507_c0_seq1 tran... [more]
gi|592831975|gb|GAXK01125569.1|2.302e-653.85TSA: Calanus finmarchicus comp24127_c1_seq2 transc... [more]
gi|592883729|gb|GAXK01074646.1|1.029e-553.85TSA: Calanus finmarchicus comp2285411_c0_seq1 tran... [more]
gi|592831976|gb|GAXK01125568.1|4.021e-454.29TSA: Calanus finmarchicus comp24127_c1_seq1 transc... [more]
gi|592839732|gb|GAXK01117812.1|3.376e-237.50TSA: Calanus finmarchicus comp1236662_c0_seq2 tran... [more]
gi|592839733|gb|GAXK01117811.1|4.328e-237.50TSA: Calanus finmarchicus comp1236662_c0_seq1 tran... [more]
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BLAST of EMLSAG00000008008 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000080085.470e-75100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s475:41655... [more]
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BLAST of EMLSAG00000008008 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008008 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008008 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008008 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold632_size121914-snap-gene-0.245.285e-1661.54protein:Tk02604 transcript:maker-scaffold632_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s475supercontigLSalAtl2s475:416557..418035 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s475-processed-gene-4.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008008 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008008EMLSAT00000008008-703855Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s475:416557..418035+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008008-690774 ID=EMLSAG00000008008-690774|Name=EMLSAG00000008008|organism=Lepeophtheirus salmonis|type=gene|length=1479bp|location=Sequence derived from alignment at LSalAtl2s475:416557..418035+ (Lepeophtheirus salmonis)
GTAAGTATGTAAATACTTGGAATAAAGGAAATCTTTCTACACATATACCA
ATATGTATGTATGAAAATACATGTACAACCGTCAACCATCTCTAAATTTA
CATAATATGTTATGTACAATAGAATGAGTTGATACAATTTGCCATTTTTT
ATAGGCGCGCTCATTCAAAATTTCAAAAAAGATCTTTAAGAGATCCAAGT
ATAAAAGTAACAAGATTTTTCGCAAACATCAACACTTTTCTGGATTCATC
CAAGACAGCACAAGCACACACACAGAGAATATTCTCATTTAAGATTGTCT
CTTACTTTGGTAGAAAAAAAATAACCTTCGTAAGTTTAGTATGGATTTCA
AATAGGGGATGATGCAATTATTGTTCTTATCATTTCAGAGTCTTCCAAAA
TGAAATTACTATTTGTTTTACTTGTTACTTTATTATCTGTTGCTGTATTC
CTTCCCCAAGAAGGAGAGTCAGCTCCCKGAGGAGGGAGAGGAGGAGGMAG
MAGATCACGMCCTCGAAGTGGTCGTCAGGGATACGATAATGGTGCAACAG
AAGGAAATGGAGCGGAACAAGAAGAGGAAGAAGGCCCAGAGCATCCATGG
TGCGACCCTAAAGACCCAATGGGGGCTTGGATGAATTACATCAATGTTAG
GAAATGGTGTGCTGAAAATGGATATACAAACTTTGGACCTTATGGAGGAG
TCCCAAGTGATGATCAAGAAGAGGCATAAGGAATTTTACACTTTACAAAT
TATTTTGTTATATTGTGTATCTTTTAATTGTTTCATTGATATAACTTAAA
AGTATAAATAAATCAGTTTAATTTTCATGAATATCATACATTTCTTCGTC
ATTGATGATCCCCAACTTATGTGCAACGGTTCGTACCTTGAATATGACCT
CATCTTGCACGAGATTAAAAGTCATGACGAGAAGAGACATTCCAAAAAGT
AAATAGAGTGAACAGAACAAAATGCTTACTTCTGCGTTTACTCGCTTATT
CGTTTTAGGGACGTAGTCACCAAACCCAATTGTTGTAAGTGTTATGAAGC
TATAGTAAAAAAACACATAAAGTAGTGACAAATACAGAGTTTAAAGTCAA
AATCCCACCAAAAATAGGATGAATCCAGAAGAGTCCATCCCTCCCATCCA
GAGAATAATACTGCACCTCCAGCAACATAGCTCAATACCCAAAACATACA
TACCCATAGAGGAATTGAGCGTTTTTCAAAGTCAAAATTATCCTCTTCAT
CTGTCGGAGTCACTACAAATTCCGTACCTTGACCTCCACAAATTACATAA
TCATAGTCTGTATTTGACTTTCCTGCTCGAAAATTACCAGTTTGAATGGG
AAGACGGGATGATGGATAAAAAAATGGGGATGATGAAGTTGCTGTGGGTG
ACAGAGTTGGACCAAATAAGTTTTTAGAACTTGTTGGACTTCCCACGTTA
GATAAGTTAGAGTCACTACTTGGTGTCTA
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