EMLSAG00000008020, EMLSAG00000008020-690786 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008020
Unique NameEMLSAG00000008020-690786
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000008020 vs. C. finmarchicus
Match: gi|592862879|gb|GAXK01094683.1| (TSA: Calanus finmarchicus comp49884_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 1.967e+0
Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 0 
Query:   12 LQWETEKVYMWSDSKTALNWIRNGP 36
            + W T K+ MW  S+TALNW+   P
Sbjct:  566 ILWLTLKLPMWFTSRTALNWLLLSP 640
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BLAST of EMLSAG00000008020 vs. L. salmonis peptides
Match: EMLSAP00000008020 (pep:novel supercontig:LSalAtl2s:LSalAtl2s477:465728:466070:-1 gene:EMLSAG00000008020 transcript:EMLSAT00000008020 description:"snap_masked-LSalAtl2s477-processed-gene-3.22")

HSP 1 Score: 131.339 bits (329), Expect = 1.715e-41
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 
Query:    1 MTRLMKSTINALQWETEKVYMWSDSKTALNWIRNGPSFLYSEDWAGDPQDIYMNVRNDLFGF 62
            MTRLMKSTINALQWETEKVYMWSDSKTALNWIRNGPSFLYSEDWAGDPQDIYMNVRNDLFGF
Sbjct:    1 MTRLMKSTINALQWETEKVYMWSDSKTALNWIRNGPSFLYSEDWAGDPQDIYMNVRNDLFGF 62
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BLAST of EMLSAG00000008020 vs. L. salmonis peptides
Match: EMLSAP00000004933 (pep:novel supercontig:LSalAtl2s:LSalAtl2s259:868481:870317:1 gene:EMLSAG00000004933 transcript:EMLSAT00000004933 description:"snap_masked-LSalAtl2s259-processed-gene-9.18")

HSP 1 Score: 67.781 bits (164), Expect = 2.897e-16
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 0 
Query:    1 MTRLMKSTINALQWETEKVYMWSDSKTALNWIRN 34
            MT LMKS INALQWETEKVYMWSDSKTALNWIRN
Sbjct:   45 MTGLMKSIINALQWETEKVYMWSDSKTALNWIRN 78
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BLAST of EMLSAG00000008020 vs. L. salmonis peptides
Match: EMLSAP00000002171 (pep:novel supercontig:LSalAtl2s:LSalAtl2s13:1011691:1012373:-1 gene:EMLSAG00000002171 transcript:EMLSAT00000002171 description:"snap_masked-LSalAtl2s13-processed-gene-10.1")

HSP 1 Score: 66.6254 bits (161), Expect = 2.090e-15
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 0 
Query:    1 MTRLMKSTINALQWETEKVYMWSDSKTALNWIRN 34
            MTRLMKS INAL WET+KVYMWSDS TALNWIRN
Sbjct:  131 MTRLMKSIINALHWETKKVYMWSDSMTALNWIRN 164
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BLAST of EMLSAG00000008020 vs. L. salmonis peptides
Match: EMLSAP00000006685 (pep:novel supercontig:LSalAtl2s:LSalAtl2s371:275346:276006:1 gene:EMLSAG00000006685 transcript:EMLSAT00000006685 description:"maker-LSalAtl2s371-snap-gene-2.16")

HSP 1 Score: 55.8398 bits (133), Expect = 1.231e-11
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 0 
Query:    1 MTRLMKSTINALQWETEKVYMWSDSKTALN 30
            MTRL+KS INALQWETEK+Y+WSDSKT LN
Sbjct:  156 MTRLIKSIINALQWETEKLYIWSDSKTELN 185
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008020 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008020 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592862879|gb|GAXK01094683.1|1.967e+048.00TSA: Calanus finmarchicus comp49884_c0_seq1 transc... [more]
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BLAST of EMLSAG00000008020 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 4
Match NameE-valueIdentityDescription
EMLSAP000000080201.715e-41100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s477:46572... [more]
EMLSAP000000049332.897e-1694.12pep:novel supercontig:LSalAtl2s:LSalAtl2s259:86848... [more]
EMLSAP000000021712.090e-1588.24pep:novel supercontig:LSalAtl2s:LSalAtl2s13:101169... [more]
EMLSAP000000066851.231e-1183.33pep:novel supercontig:LSalAtl2s:LSalAtl2s371:27534... [more]
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BLAST of EMLSAG00000008020 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008020 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008020 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008020 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s477supercontigLSalAtl2s477:465728..466070 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s477-processed-gene-3.22
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008020 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008020EMLSAT00000008020-703867Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s477:465728..466070-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008020-690786 ID=EMLSAG00000008020-690786|Name=EMLSAG00000008020|organism=Lepeophtheirus salmonis|type=gene|length=343bp|location=Sequence derived from alignment at LSalAtl2s477:465728..466070- (Lepeophtheirus salmonis)
ATGACAAGACTGATGAAGTCTACTATAAACGCGTTACAATGGGAAACAGA
AAAGGTTTATATGTGGAGTGATTCAAAGACGGCATTAAACTGGATTCGAA
ATGGTAAATAATCTTTTAAGGCTCATGTGCAAGCTCGTGTGTCAGATTCA
AGATACTTTTTCGCCATAATTTTTTTGTTTCGTTCCAAGAAAGCATAACC
CGGCGGATGCTCTCACAAAACATATAAGCGTTAATTATTTTAAAATTTGG
CATCAAGGTCCGTCGTTCCTCTACAGTGAAGACTGGGCAGGAGATCCCCA
AGATATATATATGAATGTTCGTAACGATTTGTTTGGATTTTGA
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