EMLSAG00000008062, EMLSAG00000008062-690828 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000008062
Unique NameEMLSAG00000008062-690828
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000008062 vs. L. salmonis peptides
Match: EMLSAP00000008062 (pep:novel supercontig:LSalAtl2s:LSalAtl2s47:241369:243591:1 gene:EMLSAG00000008062 transcript:EMLSAT00000008062 description:"maker-LSalAtl2s47-snap-gene-2.37")

HSP 1 Score: 249.595 bits (636), Expect = 4.132e-86
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0 
Query:    1 MSSDGEKEDLKEDEGGDSSSPPPVAPASSDVKEDQEVRRPNGRVISDFLGACGSLDIKKMREILDKDDLDPNDIVDDVGQNGFHYAVCSILRNNTSRQTSVLKYLRKKGLNESTNASSGPIFV 123
            MSSDGEKEDLKEDEGGDSSSPPPVAPASSDVKEDQEVRRPNGRVISDFLGACGSLDIKKMREILDKDDLDPNDIVDDVGQNGFHYAVCSILRNNTSRQTSVLKYLRKKGLNESTNASSGPIFV
Sbjct:    1 MSSDGEKEDLKEDEGGDSSSPPPVAPASSDVKEDQEVRRPNGRVISDFLGACGSLDIKKMREILDKDDLDPNDIVDDVGQNGFHYAVCSILRNNTSRQTSVLKYLRKKGLNESTNASSGPIFV 123
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BLAST of EMLSAG00000008062 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold462_size163801-snap-gene-0.39 (protein:Tk04564 transcript:maker-scaffold462_size163801-snap-gene-0.39-mRNA-1 annotation:"achain crystal structure of engineered northeast structural genomics consortium target")

HSP 1 Score: 47.7506 bits (112), Expect = 9.752e-8
Identity = 25/79 (31.65%), Postives = 46/79 (58.23%), Query Frame = 0 
Query:   48 FLGACGSLDIKKMREILDKDDLDPNDIVDDVGQNGFHYAVCSILRNNTSRQTSVLKYLRKKG--LNES-TNASSGPIFV 123
            FL AC +L+ + +   ++ D LD     D + QNG H+ V S  +++  +Q +++KYL  KG  +N++ T+    P+F+
Sbjct:   30 FLAACSNLNQRSIFNAVESDKLDVTRTTDAIEQNGLHFVVSSA-KHDLKKQANIVKYLVSKGADVNQARTSDGWTPLFL 107
The following BLAST results are available for this feature:
BLAST of EMLSAG00000008062 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008062 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008062 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000080624.132e-86100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s47:241369... [more]
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BLAST of EMLSAG00000008062 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008062 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008062 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000008062 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 1
Match NameE-valueIdentityDescription
maker-scaffold462_size163801-snap-gene-0.399.752e-831.65protein:Tk04564 transcript:maker-scaffold462_size1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s47supercontigLSalAtl2s47:241369..243591 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s47-snap-gene-2.37
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000008062 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000008062EMLSAT00000008062-703909Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s47:241369..243591+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000008062-690828 ID=EMLSAG00000008062-690828|Name=EMLSAG00000008062|organism=Lepeophtheirus salmonis|type=gene|length=2223bp|location=Sequence derived from alignment at LSalAtl2s47:241369..243591+ (Lepeophtheirus salmonis)
ATGAGTTCGGATGGAGAGAAGGAAGACTTGAAGGAGGATGAGGGWGGTGA
TTCCTCCTCCCCTCCCCCAGTAGCMCCAGCCTCATCGGATGTCAAAGAGG
ACCAAGAAGTGCGGCGACCCAATGGGAGAGTGATTTCAGATTTTTTAGGC
GCTTGTGGATCATTAGACATTAAGAAAATGCGAGAGATTTTAGATAAGGA
TGATCTGGATCCGAATGATATTGTGGATGATGTGGGTCAAAATGGTTTTC
ACTATGCCGTGTGCTCCATTCTGAGGAACAACACGTCACGACAAACCTCC
GTTTTGAAATATTTACGAAAGAAGGGTCTGAATGTGAATAAAGCAAGAAC
AACGGACAAATGGACACCCATTTTCCTGGCTGTGGCTTTTKGATTTCAAA
ATATTGTGAGTTGGCTCCTTTCCAAAGGKGCAAGGATCGATATATCCGAC
TCTGAGACTCGCTCACCAGAAGAAGTGGCTGSAACTTATCGATTTCATAA
AATCAAGGATATCCTGATTCATCAGTAATATATTTACAGTCAAATCATTT
AATTCTATTAATTATAATATGCATATATATTAGGAGTCCACCAATGCATC
GTCTGGGCCAATCTTTGTCTAGTTCACTCCTCTGACTCTTTTATCATTAT
TTTTACTTTTTCATAATACTCTACTTCTAATATCAATCAGAATAAAATTA
GCTATTATTAGTATAATTTCTGTTTGATTAATCGGCGGCCTGATTGAGCT
TGTGCTCATTCAAGTTTTAGTGTGATGGAGAACTCTAAATAGCTTGTAGT
AGGTTTATTACAAGAACAAAGGAAGAAACAGGGCAAATAATAACAACATA
GGTATTTGCCCAGAATCGTTGCATCCCTAATATATATACATTAGTATAGT
CAACATGATGTAGTAAGGCCACCTCCCATCCCTATTAATTTTTTTGAAAC
GTTTTCATTTACATGTTCCAAGAAATTAATATTCTCTAATTTTTTAACTT
GCGTACTAATTATATAAGTAAAACATACATATTATTAGGTTTACACATTT
GATAATTAATTATCAGTCCATTGTTTGTTCTATTACTTGTTTGCTAAATT
GAGATAATTAATCATAATGAACGTTATTCTATTTATGATTTCAGTCGCTC
TCGTGTMCCTCATTCAAGATTTTCCTGCGTTTTGAGTGGMCCTGCCATTA
GTAGTCCGACATCCCCACCACCCCCGGCCCCTCCAACGACGACGACGACA
ATTACCAATATCTCATCTCAAGAACCATCATCTACTGATAATAATTCAAG
TGTATTTTCTCCAACTGTTGAGGGGGAAGCAGCGGAGAACAGTATGATGC
TTAAAGCAGCCTAATGAAGACGTTGAGAATATCAGATATAAATTATATCT
CCAATGAAATAAATATTTTGAATGTGTAGCACATGTGCAGTTTGACTAGC
TCATCACATGTGCTAATGTTTTACAACAGAAGAAGTTTAGGAGGTTTAGA
AAGAGAAGAATAATGAAATTGATTAATAGCAATTATTATATCATTATGAA
CTTCAACGTTGTTTTTTTATCGTCTTTTAAACTTACTTCCATCTTAATCA
TATAAACTGTAATTATAAATATATATATATATTCTATATTTTACATAGAG
TTGCACAATTATAATCCTGATATTATTTATTAATGTTAAAATTTCAAGGG
TTTTTTTCTTCTATTTATATATATATTAAAATGTTTTTTTGTTTTTTTTG
TTGACAAATTATAATTTAAAACAAAATATTTAAATTTATATATTATAATA
ATATGGTGATCCATCAAATGGATCCTCCTCACCCCATAACAGAAGTCAAC
AGAATTTTCTTGAATAAACGCATCTAGAATTTTAGTGAAATAATAATATA
TATTTATCTATTTTCGAATATGGAATCGATCATCAGTTTATAACAAAGCA
GATAAATGGCATTTCTTTTCTAAAATCATTTATTTATACCTTGTTTCTAT
ATGTCTTGGCTGTGTTTTTGGTGAGAGGTGAACATTAATTCCTATAAATT
AACTCGTAATTATAAAATTATGTTTAATACATATATATATATATAATTCG
ATTTTCTCTTTATTAACAATTGTGCCTATAACCTGTCAATCCAACTCTTT
AGAAATGCAGTCAAAATAACTAAAAGCTTATAACTACTAATACTTTTATA
CTTGAAATATATTTGGAGTGAAT
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