EMLSAG00000009157, EMLSAG00000009157-691923 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009157
Unique NameEMLSAG00000009157-691923
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000009157 vs. C. finmarchicus
Match: gi|592808172|gb|GAXK01146396.1| (TSA: Calanus finmarchicus comp401263_c2_seq2 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 5.288e+0
Identity = 15/43 (34.88%), Postives = 23/43 (53.49%), Query Frame = 0 
Query:    2 KYIFSLITIGSLSATVAAATGDHDNSLATKDICSFCTDTYGLV 44
            KY+F+L+T      +V  +  D   S   KD+C+  T T+ LV
Sbjct:  145 KYLFTLVTKTFFRISVNISNVDFQVSTVFKDLCT*ITYTFFLV 273
[Close]
BLAST of EMLSAG00000009157 vs. L. salmonis peptides
Match: EMLSAP00000009157 (pep:novel supercontig:LSalAtl2s:LSalAtl2s577:390079:390707:-1 gene:EMLSAG00000009157 transcript:EMLSAT00000009157 description:"snap_masked-LSalAtl2s577-processed-gene-4.5")

HSP 1 Score: 197.593 bits (501), Expect = 1.515e-66
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 
Query:    1 MKYIFSLITIGSLSATVAAATGDHDNSLATKDICSFCTDTYGLVKDNFFNDVYAERIISSIEVFVNNFIAPPLTDFMTNPPSNQAFCGHFGLCPAA 96
            MKYIFSLITIGSLSATVAAATGDHDNSLATKDICSFCTDTYGLVKDNFFNDVYAERIISSIEVFVNNFIAPPLTDFMTNPPSNQAFCGHFGLCPAA
Sbjct:    1 MKYIFSLITIGSLSATVAAATGDHDNSLATKDICSFCTDTYGLVKDNFFNDVYAERIISSIEVFVNNFIAPPLTDFMTNPPSNQAFCGHFGLCPAA 96
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009157 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000009157 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592808172|gb|GAXK01146396.1|5.288e+034.88TSA: Calanus finmarchicus comp401263_c2_seq2 trans... [more]
back to top
BLAST of EMLSAG00000009157 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000091571.515e-66100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s577:39007... [more]
back to top
BLAST of EMLSAG00000009157 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000009157 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000009157 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000009157 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s577supercontigLSalAtl2s577:390079..390707 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s577-processed-gene-4.5
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009157 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009157EMLSAT00000009157-705004Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s577:390079..390707-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009157-691923 ID=EMLSAG00000009157-691923|Name=EMLSAG00000009157|organism=Lepeophtheirus salmonis|type=gene|length=629bp|location=Sequence derived from alignment at LSalAtl2s577:390079..390707- (Lepeophtheirus salmonis)
ATGAAGTACATTTTCTCTTTGATCACCATTGGATCTCTTTCTGCAACAGT
TGCTGCTGCTACGGGAGACCACGATAATAGTTTGGCAACAAAAGACATTT
GTAGCTTTTGTACAGATACTTATGGACTCGTCAAAGATAACTTTTTTAAC
GACGTCTATGCTGAGAGGATCATTAGCTCTATTGAAGTCGTAAGATATAA
ATTCCTTCCAGTTTTTTTCTTTATAAAAAAACATATTCACTCTTTTTAGA
AAACAAAATACAGGGGCCCTTTTTTTTCCTTAAATGAAGAATGTTCTATT
TTATTTTATTCCCANNNNNNNNNNNNNNNNNNTCTTTTGTCTATTTTTAT
GTTCTTTTTAAAAGTACTCTTGATGTATGTYCTTATAAATTCTCTCCAGC
GCGGGGCCCTTATTAAGAGTAGGACCTGGGAATAAATCCGACCATAATGA
ATAACATATTATTTATCTTTTAGATTTGTTACGTAAATGGAATGTTTTAC
CCCTTTTTTGAAGATGTGTGTTATAAGTTTGTGAATAATTTTATTGCTCC
GCCATTGACGGATTTCATGACGAATCCTCCATCAAATCAGGCATTCTGTG
GTCATTTTGGTCTGTGCCCTGCTGCTTAG
back to top
Add to Basket