EMLSAG00000009378, EMLSAG00000009378-692144 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009378
Unique NameEMLSAG00000009378-692144
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000009378 vs. C. finmarchicus
Match: gi|592941269|gb|GAXK01017284.1| (TSA: Calanus finmarchicus comp72161_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 2.983e+0
Identity = 17/52 (32.69%), Postives = 21/52 (40.38%), Query Frame = 0 
Query:   17 EMWMWTLKSNILSGLKWTCHIRTLVTPVQKKGTRVISKYILEYQRVFRENGP 68
            E + WTL   ILSG  W    R        +GT   S  + E+ R  R   P
Sbjct: 3061 EQFWWTLGMRILSGGPWRRRCRAPSGSTGTRGTLGASSPVTEFTRYRRSGTP 3216
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BLAST of EMLSAG00000009378 vs. C. finmarchicus
Match: gi|592941270|gb|GAXK01017283.1| (TSA: Calanus finmarchicus comp72161_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 2.983e+0
Identity = 17/52 (32.69%), Postives = 21/52 (40.38%), Query Frame = 0 
Query:   17 EMWMWTLKSNILSGLKWTCHIRTLVTPVQKKGTRVISKYILEYQRVFRENGP 68
            E + WTL   ILSG  W    R        +GT   S  + E+ R  R   P
Sbjct: 3061 EQFWWTLGMRILSGGPWRRRCRAPSGSTGTRGTLGASSPVTEFTRYRRSGTP 3216
[Close]
BLAST of EMLSAG00000009378 vs. C. finmarchicus
Match: gi|592941268|gb|GAXK01017285.1| (TSA: Calanus finmarchicus comp72161_c0_seq3 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 4.338e+0
Identity = 17/52 (32.69%), Postives = 21/52 (40.38%), Query Frame = 0 
Query:   17 EMWMWTLKSNILSGLKWTCHIRTLVTPVQKKGTRVISKYILEYQRVFRENGP 68
            E + WTL   ILSG  W    R        +GT   S  + E+ R  R   P
Sbjct: 3061 EQFWWTLGMRILSGGPWRRRCRAPSGSTGTRGTLGASSPVTEFTRYRRSGTP 3216
[Close]
BLAST of EMLSAG00000009378 vs. L. salmonis peptides
Match: EMLSAP00000009378 (pep:novel supercontig:LSalAtl2s:LSalAtl2s59:501589:502214:-1 gene:EMLSAG00000009378 transcript:EMLSAT00000009378 description:"maker-LSalAtl2s59-snap-gene-5.27")

HSP 1 Score: 255.758 bits (652), Expect = 1.334e-88
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 
Query:    1 MTSFSNKFNVSKQKSFEMWMWTLKSNILSGLKWTCHIRTLVTPVQKKGTRVISKYILEYQRVFRENGPVKELVPLNALGYEKYIQVLRPENSIVDNIVNYIYYKSAIQTPKYNALYKGIMKNDF 124
            MTSFSNKFNVSKQKSFEMWMWTLKSNILSGLKWTCHIRTLVTPVQKKGTRVISKYILEYQRVFRENGPVKELVPLNALGYEKYIQVLRPENSIVDNIVNYIYYKSAIQTPKYNALYKGIMKNDF
Sbjct:    1 MTSFSNKFNVSKQKSFEMWMWTLKSNILSGLKWTCHIRTLVTPVQKKGTRVISKYILEYQRVFRENGPVKELVPLNALGYEKYIQVLRPENSIVDNIVNYIYYKSAIQTPKYNALYKGIMKNDF 124
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009378 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009378 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592941269|gb|GAXK01017284.1|2.983e+032.69TSA: Calanus finmarchicus comp72161_c0_seq2 transc... [more]
gi|592941270|gb|GAXK01017283.1|2.983e+032.69TSA: Calanus finmarchicus comp72161_c0_seq1 transc... [more]
gi|592941268|gb|GAXK01017285.1|4.338e+032.69TSA: Calanus finmarchicus comp72161_c0_seq3 transc... [more]
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BLAST of EMLSAG00000009378 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000093781.334e-88100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s59:501589... [more]
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BLAST of EMLSAG00000009378 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009378 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009378 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009378 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s59supercontigLSalAtl2s59:501589..502214 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s59-snap-gene-5.27
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009378 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009378EMLSAT00000009378-705225Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s59:501589..502214-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009378-692144 ID=EMLSAG00000009378-692144|Name=EMLSAG00000009378|organism=Lepeophtheirus salmonis|type=gene|length=626bp|location=Sequence derived from alignment at LSalAtl2s59:501589..502214- (Lepeophtheirus salmonis)
ATGACGTCATTCAGTAATAAATTCAATGTAAGTAAACAAAAAAGTTTCGA
AATGTGGATGTGGACTTTAAAGTCTAATATACTTTCGGGATTGAAATGGA
CTTGTCACATTCGCACCCTTGTGACTCCCGTCCAAAAAAAAGGAACGCGA
GTGATTTCAAAGTATATTTTGGAGTATCAAAGAGTGTTTCGTGAGAATGG
TCCCGTGAAGGAACTTGTTCCTTTAAATGCACTTGGTTTTTTACACATTA
CTCCTCTATTCTATTCCCTACATAGTTTTACTTTGACTTCTATTATCATC
CTTATTTATTATTTGACAAGGAATTGTTTTTTAARGATTCTTATTTCACA
TTTTTTTATGAGTAATAATTGATAATGTAGAAATTCATTTAGTTGTGATT
GATAATTTATTATGAATGGAATTGAATAGAGAGGCTTATTAATACAATTA
TTTATTTACTTCTACCATCATCATTGTGATAATTAGGTTATGAAAAATAT
ATTCAAGTTCTTCGACCTGAAAATAGCATTGTCGATAATATTGTCAATTA
CATATACTACAAATCTGCAATTCAAACCCCTAAATATAACGCACTTTATA
AAGGGATAATGAAAAACGATTTTTAA
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