EMLSAG00000009462, EMLSAG00000009462-692228 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009462
Unique NameEMLSAG00000009462-692228
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000009462 vs. C. finmarchicus
Match: gi|592788741|gb|GAXK01165827.1| (TSA: Calanus finmarchicus comp89_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 48.1358 bits (113), Expect = 1.592e-7
Identity = 26/50 (52.00%), Postives = 28/50 (56.00%), Query Frame = 0 
Query:   14 VLGLLALKRDPPDFCTREGNGNRILESCICFTRGLLQTEECTGSTLMIWI 63
            V GLLA    PP F T +  G  ILESCIC TRG       T S LMIW+
Sbjct:  117 VAGLLAWVSPPPCFWTLQARGKLILESCICVTRGRRHLPASTTSHLMIWM 266
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BLAST of EMLSAG00000009462 vs. C. finmarchicus
Match: gi|592932571|gb|GAXK01025982.1| (TSA: Calanus finmarchicus comp4529849_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.1794 bits (56), Expect = 7.365e+0
Identity = 13/27 (48.15%), Postives = 14/27 (51.85%), Query Frame = 0 
Query:   21 KRDPPDFCTREGNGNRILESCICFTRG 47
             R     CT +  GN ILE CIC T G
Sbjct:  428 SRQSSLLCTFQIRGNFILELCICVTSG 508
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BLAST of EMLSAG00000009462 vs. L. salmonis peptides
Match: EMLSAP00000009462 (pep:novel supercontig:LSalAtl2s:LSalAtl2s60:126995:129519:1 gene:EMLSAG00000009462 transcript:EMLSAT00000009462 description:"snap_masked-LSalAtl2s60-processed-gene-1.11")

HSP 1 Score: 134.42 bits (337), Expect = 1.223e-42
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0 
Query:    1 MIFGNEGYLHKRHVLGLLALKRDPPDFCTREGNGNRILESCICFTRGLLQTEECTGSTLMIWIE 64
            MIFGNEGYLHKRHVLGLLALKRDPPDFCTREGNGNRILESCICFTRGLLQTEECTGSTLMIWIE
Sbjct:    1 MIFGNEGYLHKRHVLGLLALKRDPPDFCTREGNGNRILESCICFTRGLLQTEECTGSTLMIWIE 64
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009462 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009462 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 2
Match NameE-valueIdentityDescription
gi|592788741|gb|GAXK01165827.1|1.592e-752.00TSA: Calanus finmarchicus comp89_c0_seq1 transcrib... [more]
gi|592932571|gb|GAXK01025982.1|7.365e+048.15TSA: Calanus finmarchicus comp4529849_c0_seq1 tran... [more]
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BLAST of EMLSAG00000009462 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000094621.223e-42100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s60:126995... [more]
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BLAST of EMLSAG00000009462 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009462 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009462 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009462 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s60supercontigLSalAtl2s60:126995..129519 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s60-processed-gene-1.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009462 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009462EMLSAT00000009462-705309Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s60:126995..129519+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009462-692228 ID=EMLSAG00000009462-692228|Name=EMLSAG00000009462|organism=Lepeophtheirus salmonis|type=gene|length=2525bp|location=Sequence derived from alignment at LSalAtl2s60:126995..129519+ (Lepeophtheirus salmonis)
ATGATTTTTGGAAATGAAGGCTATTTACACAAACGACACGTAACTATTGG
TTGTGACTTGTGATTCGATAAATAGTGATATTACAATGTAGATACAATAG
AGAATCTAGTAAAAACATGTAGATTGGCGATGCATCTACTTTAAGGAGAT
GGACATATCAATGGCAAAAATAATAATCACCTTGAATACTGATCAGTGGA
TTTTAGGAAAAAATGCAACGGGGAAAAAAAGTAACAAAGTTGAAAAAATG
GCTAAATTCTTTTAAACTAACATATTACCCATCACGAATATTATATATAT
TAATATGAAAGAAAAATTAACAACACGACACTAGTTCGATTGGAAGAAGT
TCTAATCACTTAATTCTCCCTTATTTGTTGTTTCTTTTTCTATTGGATCT
TGCAAGATTTTGGTTATAATTCTTAAATTATTAAATTTTTGAGTTTTAAT
AAGCACTGGTCAAAATATAGGAAAATGTGTTGCAAACGCACACAATAACA
ATGTACCCATAAATTGTATCAGACGCCATCTTTGGCATCTAAGTTGGATA
ACATAAAATCTGAAAAGAATCAAATTAATGTGCAATAAAAGTAGCTAGAT
TTGAACAAAAAAAATCGATTAGGGACGAGATAGGTAGGATTATTAAAGAA
AAATATCTCATTATTTCCATTGTCATATAAATTTTTTATCCACAATATGG
AAAAAAGATTGTATAACGATGTATTAACATATTTTTAATGGATATTAAGA
GTGAGATATATAATAAAACTAGGTAACAACCATGATAATATATATCGATT
GAGACAGGCTTAAGTCCTTAATTTGTAAGTTCCACTATGAAATCCAATAA
TGAACTAGTGTCCTTAATATTAATGACAATATGGTTTTCAAAGTTATAAA
ATTTGCGTTGCTTAGACCCCAAAATGGCCGATGATTAGGTCTCGTAAAAA
CCCCCTATTAGTTGTCTAAAAAAGNGGGGGGGGGGGGAGCAATGACCCGG
TGTCACTAACGATGTCTATGGCAAAGATAAATTTGCGTGGAATTTTTTTT
TTTTTTAAAGTTTGAATTTTGTTTGTTTTAGAAAACAATTTCGAGTCTTG
TTTTTAAGACAATAATTAGCAATTGGCCTATTTCATTGTTTGTATTAATA
ATCATTTAACATTTCCTCGTGTGAAGACGAAACCAGGCAGGKCCCCAGCC
ATTCTTTCAAGTTATATTACTTTTTTACTTCAAGAGAGTTTTCTTGACTT
TTATCGTTAAGTAGAAAAATTCAATTTTAAAAGTAATTATTAAAATATAG
TTGCTTAGATCTGAAACCAATAATATGAAGTGTTGAGACTGTGACAAATT
TTTTTGTCTAGACTAAAGCCAGATTTAAGTCTTTCCTTAACATTTTGTTC
GTTCTTTACCTTTTATTAATATTTTAAAAGACTTATTTATGTCTCAGGGT
AAACAAGTACCTTTTAACACAGTGCAACAACAATTATATAAGATAACGTA
GATTCCAAGAATCGAGGTATTGGATTTTTAAGTCCTTAAAAATAATTACT
ACTGAAGGTTGAAGTAGTAAAAATTATTAACTTTAGTCCGATCTCGATAA
TCACGTCCCAAAAAGTATCAATTTTAAAAGAAAATTATCAGTCTAACTGA
TATACGTTCTTTAGCATTAGAGCAAAGTATTTTACTTATTAACTAATCAT
ATCGTTCACTAGTTTAATTTCAATTAACATATTCATGCATAAAGGATTCT
CAAATATGTATCAGAAAAAAAAAAATTGAGAAGAAACTGTGCCTTCATCT
TTACTATACAAGATAAATACATTTAAAACACTTAACTGGAAGTCCGCTTC
TAATTATCAGAAGCGCAATCCCGAATCGTAAGACTTTGCATGTAAAATTC
CAACCCGTCATGCAAGGTAAGTAACCTAATTTAAAGTTATCACTTGACGG
ATTTCCTATTACAAACTCATGAATAACTACATTTTCTGCTCAATCTACAA
TTAACCTAATTTATGCCCTAGTTTCGTCTTTCACAGAAGTATAAAACGAG
CCTCAAAATACCATTTTAAAAGCATTATTGAAACAAGTTCGTTTAAGAAC
AAAGTTCAATATCATTAAACGCTTTAGCTTTGGAAAACCTGAGTTCGTAA
TATTATCAGTAAAAGTACATAATAAATATGTTAATTCCAACAAATTCTTA
GTTGGTTATCTGCTTATACACACTTTCAATAGATCAATGAAACTTCCCAA
AATCCATCAACTAGAGCTTACGTGTCTCCATGAATAAGCAAGAACACTTA
TGGCTAAACATTTAACTTTAATATTTATATAATTCATAAAACAAAAGAAT
AATTGTTTACAAATAGTAGGTGTTGGGTCTCCTGGCCTTGAAGAGAGATC
CTCCAGATTTTTGTACCCGCGAAGGTAATGGGAACCGGATTTTGGAGTCG
TGCATCTGTTTTACGAGGGGTCTTCTGCAGACGGAAGAGTGTACAGGCTC
AACCTTAATGATTTGGATTGAGTGA
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