EMLSAG00000009464, EMLSAG00000009464-692230 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000009464
Unique NameEMLSAG00000009464-692230
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000009464 vs. C. finmarchicus
Match: gi|592788741|gb|GAXK01165827.1| (TSA: Calanus finmarchicus comp89_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 68.5514 bits (166), Expect = 2.565e-14
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 0
Query:   21 LLDQLNRDDFSSSLLELPELTKKVPKPRFSDDIVRSKDSHTIERSNLLLLSGQFTPDHAVFLQVSLGSH 89
            L D L+  D S  LLELPEL ++VP+ R  +D+V  KDSH ++RS+ L L G+   D  VFLQ SL  H
Sbjct:  428 LPDLLHGHDLSGGLLELPELPQEVPETRLGNDLVGGKDSHPVQRSDWLALCGELAADDTVFLQGSLALH 634          
BLAST of EMLSAG00000009464 vs. C. finmarchicus
Match: gi|592898331|gb|GAXK01060044.1| (TSA: Calanus finmarchicus comp4749676_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 36.965 bits (84), Expect = 4.626e-3
Identity = 23/68 (33.82%), Postives = 36/68 (52.94%), Query Frame = 0
Query:   17 ERSLLLDQL-NRDDFSSSLLELPELTKKVPKPRFSDDIVRSKDSHTIERSNLLLLSGQFTPDHAVFLQ 83
            +R +LLD L +  D + SLL L  L+ +VP+   S+D+V  K +H  +    + LSG     H   L+
Sbjct:   34 DRRVLLDNLVHIKDLAGSLLHLGHLSHEVPETALSNDLVGGKKAHAEDGRLGISLSGGSAAHHVELLE 237          
BLAST of EMLSAG00000009464 vs. C. finmarchicus
Match: gi|592838786|gb|GAXK01118758.1| (TSA: Calanus finmarchicus comp5315516_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 35.8094 bits (81), Expect = 7.982e-3
Identity = 16/47 (34.04%), Postives = 29/47 (61.70%), Query Frame = 0
Query:   16 KERSLLLDQLNRDDFSSSLLELPELTKKVPKPRFSDDIVRSKDSHTI 62
            K  SLL D ++ ++ +  LL L +L ++V +     D++RSKD+H +
Sbjct:   77 KVGSLLKDLVDGENVAGGLLRLHDLPEEVEEATLCSDVIRSKDTHAV 217          
BLAST of EMLSAG00000009464 vs. C. finmarchicus
Match: gi|592915584|gb|GAXK01042791.1| (TSA: Calanus finmarchicus comp6574047_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 34.2686 bits (77), Expect = 1.891e-2
Identity = 16/45 (35.56%), Postives = 29/45 (64.44%), Query Frame = 0
Query:   20 LLLDQL-NRDDFSSSLLELPELTKKVPKPRFSDDIVRSKDSHTIE 63
            +LL QL    D +S  L++ EL +++P+ R S D+V  +D+H ++
Sbjct:   39 VLLTQLVGGKDLTSGRLQVGELMQEIPEARLSLDVVLGEDTHAVD 173          
BLAST of EMLSAG00000009464 vs. C. finmarchicus
Match: gi|592855338|gb|GAXK01102206.1| (TSA: Calanus finmarchicus comp2436478_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.869e+0
Identity = 32/87 (36.78%), Postives = 42/87 (48.28%), Query Frame = 0
Query:   11 PVRGSKERSLLLDQLNRDDFSSSLLELPELTKKVPKPRFSDDIVRSKDSHTIERS-NLLLLSGQFTPDHAVFLQVSLGSHSEKRSTR 96
            PV G + R LL D  +  DF+  LL   E    VP+P    D+V  +D H ++ S    LLS      H + L V LG H + R TR
Sbjct:  359 PVVGDRSRLLLEDLRDLQDFTVGLLHPVEHGHVVPEPALGVDLVGREDVHLVDVSLAGALLSRGLQASHDLELPV-LGDH-QSRLTR 613          
BLAST of EMLSAG00000009464 vs. C. finmarchicus
Match: gi|592855339|gb|GAXK01102205.1| (TSA: Calanus finmarchicus comp2436478_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 1.884e+0
Identity = 32/87 (36.78%), Postives = 42/87 (48.28%), Query Frame = 0
Query:   11 PVRGSKERSLLLDQLNRDDFSSSLLELPELTKKVPKPRFSDDIVRSKDSHTIERS-NLLLLSGQFTPDHAVFLQVSLGSHSEKRSTR 96
            PV G + R LL D  +  DF+  LL   E    VP+P    D+V  +D H ++ S    LLS      H + L V LG H + R TR
Sbjct:   44 PVVGDRSRLLLEDLRDLQDFTVGLLHPVEHGHVVPEPALGVDLVGREDVHLVDVSLAGALLSRGLQASHDLELPV-LGDH-QSRLTR 298          
BLAST of EMLSAG00000009464 vs. C. finmarchicus
Match: gi|592949311|gb|GAXK01009242.1| (TSA: Calanus finmarchicus comp408767_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 5.176e+0
Identity = 15/55 (27.27%), Postives = 31/55 (56.36%), Query Frame = 0
Query:   22 LDQLNRDDFSSSLLELPELTKKVPKPRFSDDIVRSKDSHTIERSNLLLLSGQFTP 76
            L Q  + + S+S+++  +   K+ KPR   DI  +K++H  +  +++  +  FTP
Sbjct:  127 LGQTPKPEISNSVIKNTKTKLKLWKPRVKSDIEAAKENHNADFDSVMNYNSHFTP 291          
BLAST of EMLSAG00000009464 vs. C. finmarchicus
Match: gi|592949312|gb|GAXK01009241.1| (TSA: Calanus finmarchicus comp408767_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 28.1054 bits (61), Expect = 7.472e+0
Identity = 15/55 (27.27%), Postives = 31/55 (56.36%), Query Frame = 0
Query:   22 LDQLNRDDFSSSLLELPELTKKVPKPRFSDDIVRSKDSHTIERSNLLLLSGQFTP 76
            L Q  + + S+S+++  +   K+ KPR   DI  +K++H  +  +++  +  FTP
Sbjct:  451 LGQTPKPEISNSVIKNTKTKLKLWKPRVKSDIEAAKENHNADFDSVMNYNSHFTP 615          
BLAST of EMLSAG00000009464 vs. L. salmonis peptides
Match: EMLSAP00000009464 (pep:novel supercontig:LSalAtl2s:LSalAtl2s60:129857:130277:1 gene:EMLSAG00000009464 transcript:EMLSAT00000009464 description:"snap_masked-LSalAtl2s60-processed-gene-1.12")

HSP 1 Score: 216.853 bits (551), Expect = 1.282e-73
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0
Query:    1 MKLPDRRSSHPVRGSKERSLLLDQLNRDDFSSSLLELPELTKKVPKPRFSDDIVRSKDSHTIERSNLLLLSGQFTPDHAVFLQVSLGSHSEKRSTRVETLTGKERRKEEER 111
            MKLPDRRSSHPVRGSKERSLLLDQLNRDDFSSSLLELPELTKKVPKPRFSDDIVRSKDSHTIERSNLLLLSGQFTPDHAVFLQVSLGSHSEKRSTRVETLTGKERRKEEER
Sbjct:    1 MKLPDRRSSHPVRGSKERSLLLDQLNRDDFSSSLLELPELTKKVPKPRFSDDIVRSKDSHTIERSNLLLLSGQFTPDHAVFLQVSLGSHSEKRSTRVETLTGKERRKEEER 111          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000009464 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009464 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 8
Match NameE-valueIdentityDescription
gi|592788741|gb|GAXK01165827.1|2.565e-1449.28TSA: Calanus finmarchicus comp89_c0_seq1 transcrib... [more]
gi|592898331|gb|GAXK01060044.1|4.626e-333.82TSA: Calanus finmarchicus comp4749676_c0_seq1 tran... [more]
gi|592838786|gb|GAXK01118758.1|7.982e-334.04TSA: Calanus finmarchicus comp5315516_c0_seq1 tran... [more]
gi|592915584|gb|GAXK01042791.1|1.891e-235.56TSA: Calanus finmarchicus comp6574047_c0_seq1 tran... [more]
gi|592855338|gb|GAXK01102206.1|1.869e+036.78TSA: Calanus finmarchicus comp2436478_c1_seq1 tran... [more]
gi|592855339|gb|GAXK01102205.1|1.884e+036.78TSA: Calanus finmarchicus comp2436478_c0_seq1 tran... [more]
gi|592949311|gb|GAXK01009242.1|5.176e+027.27TSA: Calanus finmarchicus comp408767_c0_seq2 trans... [more]
gi|592949312|gb|GAXK01009241.1|7.472e+027.27TSA: Calanus finmarchicus comp408767_c0_seq1 trans... [more]
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BLAST of EMLSAG00000009464 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000094641.282e-73100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s60:129857... [more]
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BLAST of EMLSAG00000009464 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009464 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009464 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000009464 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s60supercontigLSalAtl2s60:129857..130277 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionsnap_masked-LSalAtl2s60-processed-gene-1.12
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000009464 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000009464EMLSAT00000009464-705311Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s60:129857..130277+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000009464-692230 ID=EMLSAG00000009464-692230|Name=EMLSAG00000009464|organism=Lepeophtheirus salmonis|type=gene|length=421bp|location=Sequence derived from alignment at LSalAtl2s60:129857..130277+ (Lepeophtheirus salmonis)
ATGAAGTTGCCGGATAGGAGATCATCCCATCCCGTAAGAGGATCTAAGGA GCGTGTATTATTGCACTTCAAAATCCCTTAATTCAATGTATAAAAGATAA TTACCTCAACCAAATGCCGAAGTTCTTCACTCTTAAGGGTCTCTTCTCCT TGATCAACTTAACAGAGACGATTTCTCCAGTAGTCTTCTTGAACTTCCTG AGTTGACGAAGAAAGTACCAAAACCGAGATTTAGCGACGACATCGTCAGG AGCAAAGATTCTCATACGATAGAGAGAAGTAACTTGCTCCTTCTCAGTGG GCAATTTACGCCCGATCACGCAGTATTCCTTCAAGTTTCCCTTGGCTCTC ATTCTGAAAAACGATCTACTCGCGTGGAAACGCTGACCGGAAAAGAAAGA AGGAAAGAAGAAGAAAGATAA
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