EMLSAG00000010002, EMLSAG00000010002-692768 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000010002
Unique NameEMLSAG00000010002-692768
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000010002 vs. C. finmarchicus
Match: gi|592758703|gb|GAXK01195710.1| (TSA: Calanus finmarchicus comp2660218_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 6.430e+0
Identity = 16/54 (29.63%), Postives = 27/54 (50.00%), Query Frame = 0 
Query:    5 PINTDDQLSAXPIRNASAPNSRSPSISEAPPN-----MKYQRMTRRRSSQLKNL 53
            P+   ++ +  P+RN S P+   PSI ++PP      +   R   ++   LKNL
Sbjct:   37 PLTFGEKQAHPPLRNPSLPSRIHPSIFDSPPQPPKTCLLGFRFFSKKPKNLKNL 198
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BLAST of EMLSAG00000010002 vs. L. salmonis peptides
Match: EMLSAP00000010002 (pep:novel supercontig:LSalAtl2s:LSalAtl2s656:170160:170560:1 gene:EMLSAG00000010002 transcript:EMLSAT00000010002 description:"maker-LSalAtl2s656-augustus-gene-1.7")

HSP 1 Score: 132.88 bits (333), Expect = 4.821e-42
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 
Query:    1 MTGKPINTDDQLSAXPIRNASAPNSRSPSISEAPPNMKYQRMTRRRSSQLKNLASGSTSFCYSMMH 66
            MTGKPINTDDQLSAXPIRNASAPNSRSPSISEAPPNMKYQRMTRRRSSQLKNLASGSTSFCYSMMH
Sbjct:    1 MTGKPINTDDQLSAXPIRNASAPNSRSPSISEAPPNMKYQRMTRRRSSQLKNLASGSTSFCYSMMH 66
The following BLAST results are available for this feature:
BLAST of EMLSAG00000010002 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010002 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592758703|gb|GAXK01195710.1|6.430e+029.63TSA: Calanus finmarchicus comp2660218_c0_seq1 tran... [more]
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BLAST of EMLSAG00000010002 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000100024.821e-42100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s656:17016... [more]
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BLAST of EMLSAG00000010002 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010002 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010002 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000010002 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s656supercontigLSalAtl2s656:170160..170560 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s656-augustus-gene-1.7
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000010002 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000010002EMLSAT00000010002-705849Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s656:170160..170560+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000010002-692768 ID=EMLSAG00000010002-692768|Name=EMLSAG00000010002|organism=Lepeophtheirus salmonis|type=gene|length=401bp|location=Sequence derived from alignment at LSalAtl2s656:170160..170560+ (Lepeophtheirus salmonis)
GAGTAAAGCGGGAAAAAATATAAATAAAGAATATAAAGTATTTACTACCT
ATAAACCAATACTTAAAAATGACTGGCAAGCCAATTGTAAGTACATCCAT
AATATACATGCTAAGGATCTCAAATTATAGACTAGTTTATTAATTTCAAT
TGGTATTTTGTAGAATACTGATGATCAATTATCGGCCGKTCCAATTCGAA
ATGCTAGTGCTCCAAACTCAAGAAGTCCCTCCATCTCTGAGGCACCTCCA
AATATGAAATATCAACGCATGACTCGCCGTCGTAGTTCACAATTAAAAAA
CCTTGCAAGTGGATCTACATCATTTTGTTACTCCATGATGCATTAGACTT
GAGCCAAGTCAAGGATTTTTTTAATAATTTTTCTTTTTAATTCATTCTGT
T
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