EMLSAG00000011141, EMLSAG00000011141-693907 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011141
Unique NameEMLSAG00000011141-693907
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
[Close]
BLAST of EMLSAG00000011141 vs. C. finmarchicus
Match: gi|592870627|gb|GAXK01086935.1| (TSA: Calanus finmarchicus comp328179_c0_seq2 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 7.033e+0
Identity = 15/57 (26.32%), Postives = 26/57 (45.61%), Query Frame = 0 
Query:  222 QNFEPKHTQLHYNNRRFNSRERSPNQYAKPGQFQRDPHTVFQIQDPLPINNNQVFPH 278
            QNF+ KH +   + R+FN + R      KP Q  R    + ++++   + N     H
Sbjct:  245 QNFDEKHIESRSDYRKFNIKRRRQKVSKKPSQAARSHKKILRLRNATLVENKDYLDH 415
[Close]
BLAST of EMLSAG00000011141 vs. L. salmonis peptides
Match: EMLSAP00000011141 (pep:novel supercontig:LSalAtl2s:LSalAtl2s757:31908:34038:1 gene:EMLSAG00000011141 transcript:EMLSAT00000011141 description:"maker-LSalAtl2s757-augustus-gene-0.11")

HSP 1 Score: 1035.79 bits (2677), Expect = 0.000e+0
Identity = 515/515 (100.00%), Postives = 515/515 (100.00%), Query Frame = 0 
Query:    1 MLLKWIFIITALLHLRFVHGFKVPKRKYPSSTSYVNFQHPRPKHYFTTSTKRPSIRFDENPPRATSTLSPFTLTISTKNPEYRYSSTTPPVHQLSYRPTTSRSQPELIYRSTPNPLLAFSPSPLDPPLFYNPNSQVSQSPTSIPPRYLYPQAFIDPYNQERYYAPRRLLLVPQQTKYYDPYLSNNYNTNSISPKNVHTKTEDGNQSSNDDGDDLFEYDEDHQNFEPKHTQLHYNNRRFNSRERSPNQYAKPGQFQRDPHTVFQIQDPLPINNNQVFPHQEFATPSLRDIHNRVLIRSRYPSFFRKHNTGPKYTNNQDKKQSRSRFTPKAPRKAIPNVKIMEPHIPRSTPEQTPSQFAVHPPPPSHLIETSSFPKTYPDRRLPHSLSSNPRRTSIPDIPREAISEPKVQIYNNIEDKVLKLPPPGYKIYEAVPIRPNGHTNRSGRKEGKFKNFPAEDEALGNSHEDIFNLVAGLSSPEVAFLLGSEELYKREPLNDEVMKLDKKLDKTKSLTIDKS 515
            MLLKWIFIITALLHLRFVHGFKVPKRKYPSSTSYVNFQHPRPKHYFTTSTKRPSIRFDENPPRATSTLSPFTLTISTKNPEYRYSSTTPPVHQLSYRPTTSRSQPELIYRSTPNPLLAFSPSPLDPPLFYNPNSQVSQSPTSIPPRYLYPQAFIDPYNQERYYAPRRLLLVPQQTKYYDPYLSNNYNTNSISPKNVHTKTEDGNQSSNDDGDDLFEYDEDHQNFEPKHTQLHYNNRRFNSRERSPNQYAKPGQFQRDPHTVFQIQDPLPINNNQVFPHQEFATPSLRDIHNRVLIRSRYPSFFRKHNTGPKYTNNQDKKQSRSRFTPKAPRKAIPNVKIMEPHIPRSTPEQTPSQFAVHPPPPSHLIETSSFPKTYPDRRLPHSLSSNPRRTSIPDIPREAISEPKVQIYNNIEDKVLKLPPPGYKIYEAVPIRPNGHTNRSGRKEGKFKNFPAEDEALGNSHEDIFNLVAGLSSPEVAFLLGSEELYKREPLNDEVMKLDKKLDKTKSLTIDKS
Sbjct:    1 MLLKWIFIITALLHLRFVHGFKVPKRKYPSSTSYVNFQHPRPKHYFTTSTKRPSIRFDENPPRATSTLSPFTLTISTKNPEYRYSSTTPPVHQLSYRPTTSRSQPELIYRSTPNPLLAFSPSPLDPPLFYNPNSQVSQSPTSIPPRYLYPQAFIDPYNQERYYAPRRLLLVPQQTKYYDPYLSNNYNTNSISPKNVHTKTEDGNQSSNDDGDDLFEYDEDHQNFEPKHTQLHYNNRRFNSRERSPNQYAKPGQFQRDPHTVFQIQDPLPINNNQVFPHQEFATPSLRDIHNRVLIRSRYPSFFRKHNTGPKYTNNQDKKQSRSRFTPKAPRKAIPNVKIMEPHIPRSTPEQTPSQFAVHPPPPSHLIETSSFPKTYPDRRLPHSLSSNPRRTSIPDIPREAISEPKVQIYNNIEDKVLKLPPPGYKIYEAVPIRPNGHTNRSGRKEGKFKNFPAEDEALGNSHEDIFNLVAGLSSPEVAFLLGSEELYKREPLNDEVMKLDKKLDKTKSLTIDKS 515
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011141 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000011141 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 1
Match NameE-valueIdentityDescription
gi|592870627|gb|GAXK01086935.1|7.033e+026.32TSA: Calanus finmarchicus comp328179_c0_seq2 trans... [more]
back to top
BLAST of EMLSAG00000011141 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000111410.000e+0100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s757:31908... [more]
back to top
BLAST of EMLSAG00000011141 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000011141 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000011141 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of EMLSAG00000011141 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s757supercontigLSalAtl2s757:31908..34038 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s757-augustus-gene-0.11
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011141 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011141EMLSAT00000011141-706988Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s757:31908..34038+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011141-693907 ID=EMLSAG00000011141-693907|Name=EMLSAG00000011141|organism=Lepeophtheirus salmonis|type=gene|length=2131bp|location=Sequence derived from alignment at LSalAtl2s757:31908..34038+ (Lepeophtheirus salmonis)
TGATTGTGTGTGTAACTATGCTTTTAAAATGGATCTTCATCATCACGGTA
CATCTGATAAAAATTGTAATAGTAGTCAACTTAATAAATTGAATTCCAGG
CACTTTTGCATTTACGTTTCGTCCATGGTTTCAAAGTACCCAAGAGGAAG
TACCCATCATCAACAAGCTACGTTAATTTTCAACATCCTCGACCAAAACA
TTATTTCACTACTTCTACAAAACGCCCAAGCATTCGCTTTGATGAAAACC
CTCCTCGAGCGACGAGTACCTTGTCTCCTTTTACACTCACAATATCCACG
AAAAATCCTGAATATCGTTATAGCTCAACAACCCCACCAGTACATCAACT
AAGTTATAGACCTACTACATCAAGATCTCAACCTGAACTAATTTACAGAT
CTACACCAAATCCACTATTAGCATTTAGCCCCTCTCCCTTGGATCCACCA
CTCTTTTACAATCCCAATTCTCAAGTCTCACAATCTCCAACTTCTATTCC
CCCAAGATATCTATACCCTCAAGCATTCATTGATCCCTATAATCAAGAAA
GGTATTATGCTCCTAGAAGACTTCTTTTGGTTCCACAACAGACAAAGTAC
TACGATCCATACTTATCAAACAATTACAATACTAACTCAATTTCTCCTAA
GAATGTTCATACTAAAACAGAAGATGGGAATCAATCGTCTAATGATGATG
GAGACGACTTATTCGAATATGATGAAGACCATCAAAATTTTGAGCCAAAA
CATACTCAACTTCATTATAATAATCGTCGTTTTAACTCAAGAGAGAGATC
CCCAAATCAATACGCGAAACCAGGCCAATTTCAAAGGGACCCACACACAG
TATTTCAAATACAAGATCCTTTACCAATTAATAATAATCAGGTATTTCCT
CATCAAGAATTTGCCACCCCTTCTCTTAGAGATATTCATAATCGTGTACT
GATCCGAAGCAGATACCCTTCTTTCTTTAGAAAGCACAATACAGGTCCCA
AATACACGAATAATCAAGATAAAAAACAATCTCGAAGTAGATTTACACCA
AAGGCTCCAAGAAAGGCAATTCCAAATGTGAAGATAATGGAGCCCCACAT
TCCCAGATCTACACCCGAACAGACACCGTCCCAATTTGCTGTCCATCCMC
CACCACCATCTCATCTGATTGAAACGAGTAGTTTCCCTAAGACCTATCCA
GACAGACGGCTTCCTCATTCATTATCATCTAATCCTAGACGTACATCTAT
CCCGGATATACCAAGAGAAGCCATTTCTGAGCCAAAAGTTCAAATATATA
ACAATATAGAGGATAAGGTTCTTAAATTACCTCCACCAGGCTATAAAATA
TACGAGGCCGTTCCTATAAGACCAAATGGACACACCAATAGATCAGGAAG
GAAGGAAGGTAAGTTTAAAAATTTCCCGGCTGAAGATGAGGCATTGGGGA
ATAGCCATGAGGATATTTTCAACTTGGTGGCGGGCCTTTCATCCCCCGAA
GTTGCCTTTCTCCTTGGCTCGGAAGAACTTTATAAGAGGGAGCCTCTCAA
TGATGAAGTAATGAAATTGGATAAAAAATTGGATAAAACAAAAAGTTTAA
CGATTGATAAAAGTTAGTTCTTCTCAAATAATCAAATAACTCAAAACGAA
TAATGGAACATCAACTTTTATTAAAAGAAATAAGTATTTTTATGCCACTG
CAACAACACCTTCAGTCCGTGTCAGATCGCGTTTGGCAAGCATTCGTAAT
TGTTTTTTCTTCATCCGTTTGATTTTTGCTGGGTTCTTCAACTGAAAAGA
GTCGAGGAATACAATTAGAATATATTAAAATATTTAAGTAATACAATCCG
CACTAACGCAATTCATGTTCCAAACTATAATATAAATATATTAAAATGAA
TAAAAGTCTTATTACCGTTTGAACAACTTCGGATTTTCTTTCATTTATCT
CCCGTCTTTTTGCGTTATCTAATCGCCGCTGTTTCAGTTCCTCTTTCTTC
ATCTTATTTTCATCTTTAATGGAACGCTCAAGAGCTTTAACCTTTTTCAG
CTCATTTCTCAGAGCATTTTTCTTCTTCAAGTTTGACTTCAAGCCTTTGG
TTGTGACCAAAGATGAAAAGCGATCTCTATT
back to top
Add to Basket