EMLSAG00000011519, EMLSAG00000011519-694285 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011519
Unique NameEMLSAG00000011519-694285
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592852938|gb|GAXK01104606.1| (TSA: Calanus finmarchicus comp157290_c1_seq10 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.764e-1
Identity = 15/38 (39.47%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:    9 TKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLK 46
            +KPK     KLS +E   + +E FPD D  +L ++ LK
Sbjct: 3636 SKPKLSARRKLSKDEFESVWEEHFPDEDEKLLKTFFLK 3749
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BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592852939|gb|GAXK01104605.1| (TSA: Calanus finmarchicus comp157290_c1_seq9 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.767e-1
Identity = 15/38 (39.47%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:    9 TKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLK 46
            +KPK     KLS +E   + +E FPD D  +L ++ LK
Sbjct: 3744 SKPKLSARRKLSKDEFESVWEEHFPDEDEKLLKTFFLK 3857
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BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592852940|gb|GAXK01104604.1| (TSA: Calanus finmarchicus comp157290_c1_seq8 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.767e-1
Identity = 15/38 (39.47%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:    9 TKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLK 46
            +KPK     KLS +E   + +E FPD D  +L ++ LK
Sbjct: 3766 SKPKLSARRKLSKDEFESVWEEHFPDEDEKLLKTFFLK 3879
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BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592852941|gb|GAXK01104603.1| (TSA: Calanus finmarchicus comp157290_c1_seq7 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.779e-1
Identity = 15/38 (39.47%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:    9 TKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLK 46
            +KPK     KLS +E   + +E FPD D  +L ++ LK
Sbjct: 4245 SKPKLSARRKLSKDEFESVWEEHFPDEDEKLLKTFFLK 4358
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BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592852942|gb|GAXK01104602.1| (TSA: Calanus finmarchicus comp157290_c1_seq6 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.779e-1
Identity = 15/38 (39.47%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:    9 TKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLK 46
            +KPK     KLS +E   + +E FPD D  +L ++ LK
Sbjct: 4264 SKPKLSARRKLSKDEFESVWEEHFPDEDEKLLKTFFLK 4377
[Close]
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592852943|gb|GAXK01104601.1| (TSA: Calanus finmarchicus comp157290_c1_seq5 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.779e-1
Identity = 15/38 (39.47%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:    9 TKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLK 46
            +KPK     KLS +E   + +E FPD D  +L ++ LK
Sbjct: 4267 SKPKLSARRKLSKDEFESVWEEHFPDEDEKLLKTFFLK 4380
[Close]
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592852944|gb|GAXK01104600.1| (TSA: Calanus finmarchicus comp157290_c1_seq4 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.780e-1
Identity = 15/38 (39.47%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:    9 TKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLK 46
            +KPK     KLS +E   + +E FPD D  +L ++ LK
Sbjct: 4272 SKPKLSARRKLSKDEFESVWEEHFPDEDEKLLKTFFLK 4385
[Close]
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592852945|gb|GAXK01104599.1| (TSA: Calanus finmarchicus comp157290_c1_seq3 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.780e-1
Identity = 15/38 (39.47%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:    9 TKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLK 46
            +KPK     KLS +E   + +E FPD D  +L ++ LK
Sbjct: 4286 SKPKLSARRKLSKDEFESVWEEHFPDEDEKLLKTFFLK 4399
[Close]
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592852946|gb|GAXK01104598.1| (TSA: Calanus finmarchicus comp157290_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.780e-1
Identity = 15/38 (39.47%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:    9 TKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLK 46
            +KPK     KLS +E   + +E FPD D  +L ++ LK
Sbjct: 4291 SKPKLSARRKLSKDEFESVWEEHFPDEDEKLLKTFFLK 4404
[Close]
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592852947|gb|GAXK01104597.1| (TSA: Calanus finmarchicus comp157290_c1_seq1 transcribed RNA sequence)

HSP 1 Score: 31.187 bits (69), Expect = 3.780e-1
Identity = 15/38 (39.47%), Postives = 22/38 (57.89%), Query Frame = 0 
Query:    9 TKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLK 46
            +KPK     KLS +E   + +E FPD D  +L ++ LK
Sbjct: 4294 SKPKLSARRKLSKDEFESVWEEHFPDEDEKLLKTFFLK 4407
[Close]
BLAST of EMLSAG00000011519 vs. L. salmonis peptides
Match: EMLSAP00000011519 (pep:novel supercontig:LSalAtl2s:LSalAtl2s799:201458:201745:-1 gene:EMLSAG00000011519 transcript:EMLSAT00000011519 description:"augustus_masked-LSalAtl2s799-processed-gene-2.1")

HSP 1 Score: 198.364 bits (503), Expect = 8.180e-67
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 
Query:    1 MACMEGSGTKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDCAR 95
            MACMEGSGTKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDCAR
Sbjct:    1 MACMEGSGTKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDCAR 95
[Close]
BLAST of EMLSAG00000011519 vs. L. salmonis peptides
Match: EMLSAP00000000189 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:145437:146295:-1 gene:EMLSAG00000000189 transcript:EMLSAT00000000189 description:"maker-LSalAtl2s1029-snap-gene-1.49")

HSP 1 Score: 64.6994 bits (156), Expect = 2.761e-14
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 0 
Query:   31 LFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDC 93
            +FP++D   L+S L  YPGK++EGLI+ IL    QV+C +CWE+ ++E+ +SC   H  CR C
Sbjct:    1 MFPEKDEFELTSLLKSYPGKYMEGLIDKIL-QGVQVRCLICWEDLYMEDVISCDGDHPVCRSC 62
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011519 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011519 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592852938|gb|GAXK01104606.1|3.764e-139.47TSA: Calanus finmarchicus comp157290_c1_seq10 tran... [more]
gi|592852939|gb|GAXK01104605.1|3.767e-139.47TSA: Calanus finmarchicus comp157290_c1_seq9 trans... [more]
gi|592852940|gb|GAXK01104604.1|3.767e-139.47TSA: Calanus finmarchicus comp157290_c1_seq8 trans... [more]
gi|592852941|gb|GAXK01104603.1|3.779e-139.47TSA: Calanus finmarchicus comp157290_c1_seq7 trans... [more]
gi|592852942|gb|GAXK01104602.1|3.779e-139.47TSA: Calanus finmarchicus comp157290_c1_seq6 trans... [more]
gi|592852943|gb|GAXK01104601.1|3.779e-139.47TSA: Calanus finmarchicus comp157290_c1_seq5 trans... [more]
gi|592852944|gb|GAXK01104600.1|3.780e-139.47TSA: Calanus finmarchicus comp157290_c1_seq4 trans... [more]
gi|592852945|gb|GAXK01104599.1|3.780e-139.47TSA: Calanus finmarchicus comp157290_c1_seq3 trans... [more]
gi|592852946|gb|GAXK01104598.1|3.780e-139.47TSA: Calanus finmarchicus comp157290_c1_seq2 trans... [more]
gi|592852947|gb|GAXK01104597.1|3.780e-139.47TSA: Calanus finmarchicus comp157290_c1_seq1 trans... [more]

Pages

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BLAST of EMLSAG00000011519 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000115198.180e-67100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s799:20145... [more]
EMLSAP000000001892.761e-1446.03pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:1454... [more]
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BLAST of EMLSAG00000011519 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011519 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011519 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011519 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s799supercontigLSalAtl2s799:201458..201745 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s799-processed-gene-2.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011519 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011519EMLSAT00000011519-707366Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s799:201458..201745-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011519-694285 ID=EMLSAG00000011519-694285|Name=EMLSAG00000011519|organism=Lepeophtheirus salmonis|type=gene|length=288bp|location=Sequence derived from alignment at LSalAtl2s799:201458..201745- (Lepeophtheirus salmonis)
ATGGCTTGCATGGAGGGGAGTGGTACGAAACCCAAAAGTGGTCACTCTGG
AAAACTCTCGTCAGAGGAAAATATTGACCTATTACAGGAATTATTTCCAG
ATCGAGATGTGAACATTTTATCATCTTATCTTTTGAAATATCCGGGGAAA
CACATTGAAGGTTTAATTGAAATTATTCTCGGGAATGATTCACAAGTCAA
GTGTGAGGTTTGCTGGGAAGAATATTTTCTCGAAAACACTGTGTCATGTG
TTAATAGCCACTTTTTCTGCCGAGATTGTGCTAGGTAA
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