EMLSAG00000011519, EMLSAG00000011519-694285 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592756155|gb|GAXK01198258.1| (TSA: Calanus finmarchicus comp338360_c0_seq1 transcribed RNA sequence) HSP 1 Score: 30.0314 bits (66), Expect = 8.577e-1 Identity = 26/102 (25.49%), Postives = 46/102 (45.10%), Query Frame = 0 Query: 1 MACMEGSGTKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLKYP--GKHIEGL-------IEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDC 93 M ++ + K K S EE + +++ F ++D+ L + + K+ K E L +EI+ G +++C VC E + C N HF C+ C Sbjct: 37 MKVLKINDRKQKQEISAMKKHEERVQNMKKSF-EKDITDLKNLMDKFEEEAKKAEDLAAKHKHFVEILSG---KIECPVCLEIPRVGPVPVCPNGHFVCKKC 330
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592893371|gb|GAXK01065004.1| (TSA: Calanus finmarchicus comp2616755_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.6462 bits (65), Expect = 9.226e-1 Identity = 12/31 (38.71%), Postives = 17/31 (54.84%), Query Frame = 0 Query: 65 QVKCEVCWEEYFLENTVSCVNSHFFCRDCAR 95 +++C VC+E SCVN H C +C R Sbjct: 88 RIECPVCYEIPAEGPVYSCVNGHLVCSNCKR 180
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592844699|gb|GAXK01112845.1| (TSA: Calanus finmarchicus comp2689927_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 1.457e+0 Identity = 18/58 (31.03%), Postives = 29/58 (50.00%), Query Frame = 0 Query: 39 ILSSYLLKYPGKHIEGLIEIILGN-DSQVKCEVCWEEYFLENTVSCVNSHFFCRDCAR 95 ++S KY G +E E+++ +++C VC+E SCVN H C +C R Sbjct: 395 VVSQQEKKYIG--LEDKYEVLIDKLKDRLECPVCYEIPVAGPVHSCVNGHLVCSNCKR 562
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592918720|gb|GAXK01039655.1| (TSA: Calanus finmarchicus comp7072284_c0_seq1 transcribed RNA sequence) HSP 1 Score: 29.261 bits (64), Expect = 1.639e+0 Identity = 13/29 (44.83%), Postives = 17/29 (58.62%), Query Frame = 0 Query: 68 CEVCWEEYFLENT--VSCVNSHFFCRDCA 94 CE+C+EEY +N V C H FC C+ Sbjct: 251 CELCFEEYSADNKPYVVCTEGHSFCYPCS 337
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592850447|gb|GAXK01107097.1| (TSA: Calanus finmarchicus comp37983_c1_seq2 transcribed RNA sequence) HSP 1 Score: 28.4906 bits (62), Expect = 3.180e+0 Identity = 9/28 (32.14%), Postives = 13/28 (46.43%), Query Frame = 0 Query: 68 CEVCWEEYFLENTVSCVNSHFFCRDCAR 95 C VC+ + C N H C+DC + Sbjct: 163 CPVCFTSLASKRIFQCANGHHVCQDCKK 246
BLAST of EMLSAG00000011519 vs. L. salmonis peptides
Match: EMLSAP00000011519 (pep:novel supercontig:LSalAtl2s:LSalAtl2s799:201458:201745:-1 gene:EMLSAG00000011519 transcript:EMLSAT00000011519 description:"augustus_masked-LSalAtl2s799-processed-gene-2.1") HSP 1 Score: 198.364 bits (503), Expect = 8.180e-67 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 Query: 1 MACMEGSGTKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDCAR 95 MACMEGSGTKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDCAR Sbjct: 1 MACMEGSGTKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDCAR 95
BLAST of EMLSAG00000011519 vs. L. salmonis peptides
Match: EMLSAP00000000189 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:145437:146295:-1 gene:EMLSAG00000000189 transcript:EMLSAT00000000189 description:"maker-LSalAtl2s1029-snap-gene-1.49") HSP 1 Score: 64.6994 bits (156), Expect = 2.761e-14 Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 0 Query: 31 LFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDC 93 +FP++D L+S L YPGK++EGLI+ IL QV+C +CWE+ ++E+ +SC H CR C Sbjct: 1 MFPEKDEFELTSLLKSYPGKYMEGLIDKIL-QGVQVRCLICWEDLYMEDVISCDGDHPVCRSC 62 The following BLAST results are available for this feature:
BLAST of EMLSAG00000011519 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 25
Pagesback to top
BLAST of EMLSAG00000011519 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 2
BLAST of EMLSAG00000011519 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000011519 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000011519 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000011519 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 0
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s799:201458..201745- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000011519-694285 ID=EMLSAG00000011519-694285|Name=EMLSAG00000011519|organism=Lepeophtheirus salmonis|type=gene|length=288bp|location=Sequence derived from alignment at LSalAtl2s799:201458..201745- (Lepeophtheirus salmonis)back to top Add to Basket
|