EMLSAG00000011519, EMLSAG00000011519-694285 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011519
Unique NameEMLSAG00000011519-694285
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592756155|gb|GAXK01198258.1| (TSA: Calanus finmarchicus comp338360_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 30.0314 bits (66), Expect = 8.577e-1
Identity = 26/102 (25.49%), Postives = 46/102 (45.10%), Query Frame = 0
Query:    1 MACMEGSGTKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLKYP--GKHIEGL-------IEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDC 93
            M  ++ +  K K   S     EE +  +++ F ++D+  L + + K+    K  E L       +EI+ G   +++C VC E   +     C N HF C+ C
Sbjct:   37 MKVLKINDRKQKQEISAMKKHEERVQNMKKSF-EKDITDLKNLMDKFEEEAKKAEDLAAKHKHFVEILSG---KIECPVCLEIPRVGPVPVCPNGHFVCKKC 330          
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592893371|gb|GAXK01065004.1| (TSA: Calanus finmarchicus comp2616755_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.6462 bits (65), Expect = 9.226e-1
Identity = 12/31 (38.71%), Postives = 17/31 (54.84%), Query Frame = 0
Query:   65 QVKCEVCWEEYFLENTVSCVNSHFFCRDCAR 95
            +++C VC+E        SCVN H  C +C R
Sbjct:   88 RIECPVCYEIPAEGPVYSCVNGHLVCSNCKR 180          
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592844699|gb|GAXK01112845.1| (TSA: Calanus finmarchicus comp2689927_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.457e+0
Identity = 18/58 (31.03%), Postives = 29/58 (50.00%), Query Frame = 0
Query:   39 ILSSYLLKYPGKHIEGLIEIILGN-DSQVKCEVCWEEYFLENTVSCVNSHFFCRDCAR 95
            ++S    KY G  +E   E+++     +++C VC+E        SCVN H  C +C R
Sbjct:  395 VVSQQEKKYIG--LEDKYEVLIDKLKDRLECPVCYEIPVAGPVHSCVNGHLVCSNCKR 562          
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592918720|gb|GAXK01039655.1| (TSA: Calanus finmarchicus comp7072284_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 29.261 bits (64), Expect = 1.639e+0
Identity = 13/29 (44.83%), Postives = 17/29 (58.62%), Query Frame = 0
Query:   68 CEVCWEEYFLENT--VSCVNSHFFCRDCA 94
            CE+C+EEY  +N   V C   H FC  C+
Sbjct:  251 CELCFEEYSADNKPYVVCTEGHSFCYPCS 337          
BLAST of EMLSAG00000011519 vs. C. finmarchicus
Match: gi|592850447|gb|GAXK01107097.1| (TSA: Calanus finmarchicus comp37983_c1_seq2 transcribed RNA sequence)

HSP 1 Score: 28.4906 bits (62), Expect = 3.180e+0
Identity = 9/28 (32.14%), Postives = 13/28 (46.43%), Query Frame = 0
Query:   68 CEVCWEEYFLENTVSCVNSHFFCRDCAR 95
            C VC+     +    C N H  C+DC +
Sbjct:  163 CPVCFTSLASKRIFQCANGHHVCQDCKK 246          
BLAST of EMLSAG00000011519 vs. L. salmonis peptides
Match: EMLSAP00000011519 (pep:novel supercontig:LSalAtl2s:LSalAtl2s799:201458:201745:-1 gene:EMLSAG00000011519 transcript:EMLSAT00000011519 description:"augustus_masked-LSalAtl2s799-processed-gene-2.1")

HSP 1 Score: 198.364 bits (503), Expect = 8.180e-67
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
Query:    1 MACMEGSGTKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDCAR 95
            MACMEGSGTKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDCAR
Sbjct:    1 MACMEGSGTKPKSGHSGKLSSEENIDLLQELFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDCAR 95          
BLAST of EMLSAG00000011519 vs. L. salmonis peptides
Match: EMLSAP00000000189 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:145437:146295:-1 gene:EMLSAG00000000189 transcript:EMLSAT00000000189 description:"maker-LSalAtl2s1029-snap-gene-1.49")

HSP 1 Score: 64.6994 bits (156), Expect = 2.761e-14
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 0
Query:   31 LFPDRDVNILSSYLLKYPGKHIEGLIEIILGNDSQVKCEVCWEEYFLENTVSCVNSHFFCRDC 93
            +FP++D   L+S L  YPGK++EGLI+ IL    QV+C +CWE+ ++E+ +SC   H  CR C
Sbjct:    1 MFPEKDEFELTSLLKSYPGKYMEGLIDKIL-QGVQVRCLICWEDLYMEDVISCDGDHPVCRSC 62          
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011519 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011519 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 25
Match NameE-valueIdentityDescription
gi|592756155|gb|GAXK01198258.1|8.577e-125.49TSA: Calanus finmarchicus comp338360_c0_seq1 trans... [more]
gi|592893371|gb|GAXK01065004.1|9.226e-138.71TSA: Calanus finmarchicus comp2616755_c0_seq1 tran... [more]
gi|592844699|gb|GAXK01112845.1|1.457e+031.03TSA: Calanus finmarchicus comp2689927_c0_seq1 tran... [more]
gi|592918720|gb|GAXK01039655.1|1.639e+044.83TSA: Calanus finmarchicus comp7072284_c0_seq1 tran... [more]
gi|592850447|gb|GAXK01107097.1|3.180e+032.14TSA: Calanus finmarchicus comp37983_c1_seq2 transc... [more]

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BLAST of EMLSAG00000011519 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 2
Match NameE-valueIdentityDescription
EMLSAP000000115198.180e-67100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s799:20145... [more]
EMLSAP000000001892.761e-1446.03pep:novel supercontig:LSalAtl2s:LSalAtl2s1029:1454... [more]
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BLAST of EMLSAG00000011519 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011519 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011519 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011519 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s799supercontigLSalAtl2s799:201458..201745 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionaugustus_masked-LSalAtl2s799-processed-gene-2.1
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011519 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011519EMLSAT00000011519-707366Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s799:201458..201745-

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011519-694285 ID=EMLSAG00000011519-694285|Name=EMLSAG00000011519|organism=Lepeophtheirus salmonis|type=gene|length=288bp|location=Sequence derived from alignment at LSalAtl2s799:201458..201745- (Lepeophtheirus salmonis)
ATGGCTTGCATGGAGGGGAGTGGTACGAAACCCAAAAGTGGTCACTCTGG AAAACTCTCGTCAGAGGAAAATATTGACCTATTACAGGAATTATTTCCAG ATCGAGATGTGAACATTTTATCATCTTATCTTTTGAAATATCCGGGGAAA CACATTGAAGGTTTAATTGAAATTATTCTCGGGAATGATTCACAAGTCAA GTGTGAGGTTTGCTGGGAAGAATATTTTCTCGAAAACACTGTGTCATGTG TTAATAGCCACTTTTTCTGCCGAGATTGTGCTAGGTAA
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