EMLSAG00000011944, EMLSAG00000011944-694710 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000011944
Unique NameEMLSAG00000011944-694710
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000011944 vs. L. salmonis peptides
Match: EMLSAP00000011944 (pep:novel supercontig:LSalAtl2s:LSalAtl2s846:177909:178785:1 gene:EMLSAG00000011944 transcript:EMLSAT00000011944 description:"maker-LSalAtl2s846-augustus-gene-0.6")

HSP 1 Score: 288.5 bits (737), Expect = 5.166e-101
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0 
Query:    1 MSRGIDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLQALRSTLLFCVEEMISAIEAEITKNQDLRCNTIKHAQKIIQDRFHSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR 140
            MSRGIDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLQALRSTLLFCVEEMISAIEAEITKNQDLRCNTIKHAQKIIQDRFHSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR
Sbjct:    1 MSRGIDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLQALRSTLLFCVEEMISAIEAEITKNQDLRCNTIKHAQKIIQDRFHSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR 140
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BLAST of EMLSAG00000011944 vs. L. salmonis peptides
Match: EMLSAP00000000699 (pep:novel supercontig:LSalAtl2s:LSalAtl2s110:56299:56785:-1 gene:EMLSAG00000000699 transcript:EMLSAT00000000699 description:"maker-LSalAtl2s110-augustus-gene-0.3")

HSP 1 Score: 276.559 bits (706), Expect = 2.713e-96
Identity = 133/140 (95.00%), Postives = 138/140 (98.57%), Query Frame = 0 
Query:    1 MSRGIDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLQALRSTLLFCVEEMISAIEAEITKNQDLRCNTIKHAQKIIQDRFHSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR 140
            MSRG+DCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEML+ALR+TLL+ VEEMISAIEAEITKNQDLRCNTIKHAQ+IIQDRF SIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR
Sbjct:    1 MSRGMDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLKALRATLLYSVEEMISAIEAEITKNQDLRCNTIKHAQQIIQDRFRSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR 140
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BLAST of EMLSAG00000011944 vs. L. salmonis peptides
Match: EMLSAP00000001316 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1222:82149:82639:-1 gene:EMLSAG00000001316 transcript:EMLSAT00000001316 description:"maker-LSalAtl2s1222-augustus-gene-0.7")

HSP 1 Score: 265.388 bits (677), Expect = 9.264e-92
Identity = 125/140 (89.29%), Postives = 137/140 (97.86%), Query Frame = 0 
Query:    1 MSRGIDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLQALRSTLLFCVEEMISAIEAEITKNQDLRCNTIKHAQKIIQDRFHSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR 140
            MSRG+ CNLD+KLNQSYS CPDEFGNASFLS+PTR+ELLM+RVQTLVQQSNELSKNEMEMLQALR+TL+ CVEEMI+AIEAEITKNQDLRCNTIK+AQKIIQDRFHSIKPDEDEL+GFSSELQLFI+D+DTFQDCVPGRR
Sbjct:    1 MSRGMSCNLDLKLNQSYSQCPDEFGNASFLSNPTRLELLMSRVQTLVQQSNELSKNEMEMLQALRATLISCVEEMIAAIEAEITKNQDLRCNTIKNAQKIIQDRFHSIKPDEDELKGFSSELQLFIRDVDTFQDCVPGRR 140
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BLAST of EMLSAG00000011944 vs. L. salmonis peptides
Match: EMLSAP00000001584 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1274:95760:96281:-1 gene:EMLSAG00000001584 transcript:EMLSAT00000001584 description:"maker-LSalAtl2s1274-augustus-gene-0.24")

HSP 1 Score: 253.062 bits (645), Expect = 8.505e-87
Identity = 119/140 (85.00%), Postives = 131/140 (93.57%), Query Frame = 0 
Query:    1 MSRGIDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLQALRSTLLFCVEEMISAIEAEITKNQDLRCNTIKHAQKIIQDRFHSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR 140
            MS  +DCNLDMKL+QSYSACPDEFGNASFLSSPTR+ELLMTR Q+LV QSNELSKNEMEM+QAL+STL+ CVE+MIS+IE E+TKNQDLRCNTIKH Q+IIQDRFHSIKPDEDEL+GFSSELQLF  DIDTFQDCVPGRR
Sbjct:   12 MSHRMDCNLDMKLDQSYSACPDEFGNASFLSSPTRLELLMTRAQSLVNQSNELSKNEMEMIQALKSTLVSCVEDMISSIETEMTKNQDLRCNTIKHVQEIIQDRFHSIKPDEDELKGFSSELQLFFHDIDTFQDCVPGRR 151
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BLAST of EMLSAG00000011944 vs. L. salmonis peptides
Match: EMLSAP00000002948 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1696:22493:22980:-1 gene:EMLSAG00000002948 transcript:EMLSAT00000002948 description:"maker-LSalAtl2s1696-augustus-gene-0.5")

HSP 1 Score: 188.348 bits (477), Expect = 1.611e-61
Identity = 89/139 (64.03%), Postives = 114/139 (82.01%), Query Frame = 0 
Query:    2 SRGIDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLMTRVQTLVQQSNELSKNEMEMLQALRSTLLFCVEEMISAIEAEITKNQDLRCNTIKHAQKIIQDRFHSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGRR 140
            ++   CNLD+K NQSYS CPDEF NASFLS+PTRMELLM+R QTLV+ SNEL+KNE EML AL++TLL  V ++++A+E EITK Q+LRCNTIKHA + IQ+RFHS++PDE+EL+ FSSELQ FI  I++  DCV  ++
Sbjct:    3 NKNFFCNLDVKPNQSYSTCPDEFSNASFLSNPTRMELLMSRAQTLVEGSNELNKNEYEMLAALKNTLLSSVHDLVNALEEEITKIQELRCNTIKHAFEAIQERFHSMQPDENELKNFSSELQYFIDGINSSLDCVSNKK 141
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BLAST of EMLSAG00000011944 vs. L. salmonis peptides
Match: EMLSAP00000002108 (pep:novel supercontig:LSalAtl2s:LSalAtl2s1398:446:3406:1 gene:EMLSAG00000002108 transcript:EMLSAT00000002108 description:"maker-LSalAtl2s1398-augustus-gene-0.8")

HSP 1 Score: 107.071 bits (266), Expect = 6.584e-30
Identity = 53/140 (37.86%), Postives = 94/140 (67.14%), Query Frame = 0 
Query:    1 MSRGIDCNLDMKLNQSYSACPDEFGNASFLSSPTRMELLM-TRVQTLVQQSNELSKNEMEMLQALRSTLLFCVEEMISAIEAEITKNQDLRCNTIKHAQKIIQDRFHSIKPDEDELQGFSSELQLFIQDIDTFQDCVPGR 139
            M  G+    +   + +Y +C D+F N+ FLSSPT+ E++M  ++  LV QSNELSKNE+EM+ ALR++L+  V ++I++++++I + Q +RC+ +K     +Q+ F+  + DE ELQ F++ELQ F+ +I+   +C+  +
Sbjct:    1 MYTGLSTIKESAYSINYGSCQDKFVNSFFLSSPTKSEIMMFPKIHKLVDQSNELSKNEIEMINALRNSLVESVRQLITSLKSQIAEIQSMRCHRLKKVLNFMQNLFYIGQSDETELQEFATELQYFVNEINIELECLSRK 140
The following BLAST results are available for this feature:
BLAST of EMLSAG00000011944 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011944 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011944 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 6
Match NameE-valueIdentityDescription
EMLSAP000000119445.166e-101100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s846:17790... [more]
EMLSAP000000006992.713e-9695.00pep:novel supercontig:LSalAtl2s:LSalAtl2s110:56299... [more]
EMLSAP000000013169.264e-9289.29pep:novel supercontig:LSalAtl2s:LSalAtl2s1222:8214... [more]
EMLSAP000000015848.505e-8785.00pep:novel supercontig:LSalAtl2s:LSalAtl2s1274:9576... [more]
EMLSAP000000029481.611e-6164.03pep:novel supercontig:LSalAtl2s:LSalAtl2s1696:2249... [more]
EMLSAP000000021086.584e-3037.86pep:novel supercontig:LSalAtl2s:LSalAtl2s1398:446:... [more]
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BLAST of EMLSAG00000011944 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011944 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011944 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000011944 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s846supercontigLSalAtl2s846:177909..178785 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s846-augustus-gene-0.6
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000011944 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000011944EMLSAT00000011944-707791Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s846:177909..178785+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000011944-694710 ID=EMLSAG00000011944-694710|Name=EMLSAG00000011944|organism=Lepeophtheirus salmonis|type=gene|length=877bp|location=Sequence derived from alignment at LSalAtl2s846:177909..178785+ (Lepeophtheirus salmonis)
AGATAAAATATTGATATTGATTTCAGTAGTTTTCAAAATTTGTCTATGTA
AAGACCTTAATTATTATATATTTAAAAAAATTCAAATATGTCTCGTGGAA
TAGATTGTAATTTGGATATGAAGCTGAATCAATCATACTCAGCCTGTCCG
GATGAGTTTGGAAATGCTTCATTCCTGAGTAGTCCCACTCGGATGGAGCT
TTTAATGACTCGAGTTCAAACTTTGGTTCAGCAATCCAACGAGCTGAGTA
AAAATGTAATGTTGAACCCTTATTTATTTATTTATAATTATGTTTCAATA
ATATATTATTTAAATTTAGGAAATGGAAATGCTTCAAGCTTTAAGATCCA
CTCTTTTATTCTGTGTTGAGGAAATGATAAGTGCTATTGAGGCAGAAATC
ACAAAGAATCAAGACTTGAGATGTAATACAATTAAACATGCTCAAAAAAT
TATTCAGGATAGATTTCATTCCATTAAGCCAGATGAGGATGAACTCCAAG
GGTTTTCTTCGGAATTACAACTTTTTATTCAGGATATTGATACGTTCCAA
GACTGTGTTCCTGGACGCAGATAACTTTACCTTCGATTTTATAACTGCTA
ATTGGAACAATGTTACAATTTATTTCATATATATATGCTTGTATTCATTA
TATTTGTAGAAATCCGCCTTGTATTATGCATGAATAAATCAAGTTTTATA
CACAGATTGCATCATAATTGTAAATGATACCATTTTGTGGGCTCAAAGTT
TATATTTTTAATAAATAGAAATAAAAACTTTTAATAAATCTTGATGAAAC
TTCATTAAATAGCTTTGATAGCATAAACCGCTTAACAAGTGCATTGTATA
CTAGATAATGTTAATAATAAACAGTGA
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