EMLSAG00000012281, EMLSAG00000012281-695047 (gene) Lepeophtheirus salmonis

Overview
NameEMLSAG00000012281
Unique NameEMLSAG00000012281-695047
Typegene
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments

Nothing found

Homology
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BLAST of EMLSAG00000012281 vs. C. finmarchicus
Match: gi|592752673|gb|GAXK01201740.1| (TSA: Calanus finmarchicus comp87366_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.7202 bits (60), Expect = 2.449e+0
Identity = 17/47 (36.17%), Postives = 26/47 (55.32%), Query Frame = 0 
Query:   14 LKRSNCSSHQKTCLLISINRT--STLQYNTYFWKKTQIKLTGFGINQ 58
            L R +   H K   +I+IN    ST+QY+ YF++K    L+ F + Q
Sbjct:  698 LGRFDI*DH*KIKTIININLPCPSTVQYSLYFYQKIVCMLSEFNVQQ 838
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BLAST of EMLSAG00000012281 vs. C. finmarchicus
Match: gi|592800590|gb|GAXK01153978.1| (TSA: Calanus finmarchicus comp7334047_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 27.335 bits (59), Expect = 2.581e+0
Identity = 11/38 (28.95%), Postives = 19/38 (50.00%), Query Frame = 0 
Query:   18 NCSSHQKT----CLLISINRTSTLQYNTYFWKKTQIKL 51
            +C+  QK+    C    +N  + LQYN Y+W    + +
Sbjct:   89 HCAREQKSSLGKCTTTRLNDVADLQYNCYYWTPADLDV 202
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BLAST of EMLSAG00000012281 vs. C. finmarchicus
Match: gi|592930376|gb|GAXK01028169.1| (TSA: Calanus finmarchicus comp1611364_c0_seq1 transcribed RNA sequence)

HSP 1 Score: 26.5646 bits (57), Expect = 7.397e+0
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 0 
Query:   38 QYNTYFWKKTQIKLTGFG 55
            QYN   W  T+ +LTGFG
Sbjct: 2859 QYNLLAWSTTESQLTGFG 2912
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BLAST of EMLSAG00000012281 vs. L. salmonis peptides
Match: EMLSAP00000012281 (pep:novel supercontig:LSalAtl2s:LSalAtl2s896:99182:100974:1 gene:EMLSAG00000012281 transcript:EMLSAT00000012281 description:"maker-LSalAtl2s896-snap-gene-1.2")

HSP 1 Score: 124.02 bits (310), Expect = 1.091e-38
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0 
Query:    1 VIVNEICARVRETLKRSNCSSHQKTCLLISINRTSTLQYNTYFWKKTQIKLTGFGINQTCI 61
            VIVNEICARVRETLKRSNCSSHQKTCLLISINRTSTLQYNTYFWKKTQIKLTGFGINQTCI
Sbjct:    1 VIVNEICARVRETLKRSNCSSHQKTCLLISINRTSTLQYNTYFWKKTQIKLTGFGINQTCI 61
The following BLAST results are available for this feature:
BLAST of EMLSAG00000012281 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012281 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA)
Total hits: 3
Match NameE-valueIdentityDescription
gi|592752673|gb|GAXK01201740.1|2.449e+036.17TSA: Calanus finmarchicus comp87366_c0_seq1 transc... [more]
gi|592800590|gb|GAXK01153978.1|2.581e+028.95TSA: Calanus finmarchicus comp7334047_c0_seq1 tran... [more]
gi|592930376|gb|GAXK01028169.1|7.397e+055.56TSA: Calanus finmarchicus comp1611364_c0_seq1 tran... [more]
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BLAST of EMLSAG00000012281 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self)
Total hits: 1
Match NameE-valueIdentityDescription
EMLSAP000000122811.091e-38100.00pep:novel supercontig:LSalAtl2s:LSalAtl2s896:99182... [more]
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BLAST of EMLSAG00000012281 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012281 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012281 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017))
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of EMLSAG00000012281 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s896supercontigLSalAtl2s896:99182..100974 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Blast vs. GO2014-04-02
TblastN vs C. finmarchicus TSA2014-05-09
Blastp vs. self2014-05-10
Blastp vs. SwissProt2017-02-10
Blastp vs. Selected Arthropods2017-02-20
Blastp vs. NR (2/2017)2017-02-20
Blastp vs. Tigriopus kingsejongensis proteins2018-04-18
Properties
Property NameValue
Logic nameensemblgenomes
Descriptionmaker-LSalAtl2s896-snap-gene-1.2
Biotypeprotein_coding
EvidenceIEA
NoteHypothetical protein
Cross References
External references for this gene
DatabaseAccession
Ensembl Metazoa (gene)EMLSAG00000012281 (primary cross-reference)
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
EMLSAT00000012281EMLSAT00000012281-708128Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

gene from alignment at LSalAtl2s896:99182..100974+

Legend: mRNA
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAG00000012281-695047 ID=EMLSAG00000012281-695047|Name=EMLSAG00000012281|organism=Lepeophtheirus salmonis|type=gene|length=1793bp|location=Sequence derived from alignment at LSalAtl2s896:99182..100974+ (Lepeophtheirus salmonis)
GTTATTGTTAATGAGATTTGTGCAAGGGTTAGAGAGACGTGTGCACTTAG
GAATTCAGTTGCAGGGATCTATTAATAGTAACAGTAGTTATGGATAKACT
ATATATTAGTGTGGGCTTAAAGAAATCAATGTTTTACTTTGACGTGTTTC
AACCTTTCATTTAATTCCTTTTATTATAAAAAATCACTGCGCAAAATATT
TTTGACTGTAATACATATTTAATAGGGCTAGGAAGGTACTTTAACCCCAT
GGTTTGGTATAAACAGCGTTACAACATTCAGAGTACGTGGTTCAGTATGG
TAAAYTATGATTTTTACTATTAATGTAGTTTTTCGAAAAAAATCGATATT
ATTTTTTAATTATTTCTTTTCTGCCCCCCCCCCAAAAAAAAACCCTAAAT
GTATTTAACTTCTCTAAAACACAAAAGTTGATTTAAAAAATAAACGGGTT
ATATAATACTATTATTCAAGAATCTATATATATATTTATTAATTTTTTTT
GTCAATAAGATGAGCTTGTCTACAGGTTATAAACAAAAACCGATTAGAAG
TAACAATATCACCAGCTGGCTTTCCCTTGATACAAATGTATTTGTATTGT
TGAGGTATTGTGAGGCTAACTTGAAAAAATTGAGAAAATAGAATTTATAT
TTTCACATTTACAACCCGATTGACAGGTTAAGAGAATGAAAATAGTANNN
NNTTTAAGTACACAGTAAGAGCCACCCTTGTGTACAATATACAGAAAATG
AATAAATATCAGCTGTTCTTTAACAGACAACATCATTTTTATATTTAATA
TTTATTGATAGCGTTCTGTCTCTGTGTTTTTACTTATAGACTCCTAAACT
AATTATTGAGTTGAGGTTATTTTTGGCTTTAATATGATCCCCTCAACCAG
TTAACAGAACTATGTTACTTTTGTTCTACTGTAGGCGCTAGGCCATCCTA
TAAGCATCGATAAGTACTTTTTTTCAACTACTGTACTTTACAAAAAAAAG
TATCAAACTATTAAGGCCTTGTCTTAGATTAGAATTGCATAGCTTGAAAA
ATGAGGCAACTAACAACCTTTAAAATAAGTACTTTTTACTTGTCTTTTTG
GTTAAGGATGCATGGCAAAACAAAATTAAATGGAGGGTTCAATCATGAAA
CAAAAATTGTTAAGTCTACAGTTTTACATACTGCTTATATTTCTTGTCCA
GAGCTCCTAGGTATCTATAAAAACAACATTTTTCACAAAACTAATTCTTA
AAGTGAATCACAAGAATATTACTACAGGTTGTATTATGATTGAATTTGAG
GACTGGATTCCKCAAAATTTTACTCCCATTTTTTTTTTTTTTTATTGAGA
AAATCAAGAAAAGGTTGTCATCCATAACCAATTGTTAGTATTAGAAAAAT
ATATAGTAAATCTAAAAGGTAATGGATATTTGCATTTATTTTTATCTCGA
CAAAGTGATTACTAACCATTGTAAATTAACAACTGATAGATGTATTGAAT
CTAAATAACAGTTCATTCCAGAAAAGTAACTTATTTTAACTCGACAATAT
AGCTTGAAAAGGAGTAATTGCTCATCCCATCAGAAGACTTGCTTGCTAAT
TTCAATCAATAGAACATCCACACTGCAGTACAATACCTACTTTTGGAAGA
AGACTCAAATAAAATTAACTGGTTTTGGAATAAATCAAACATGTATATAA
ATGTAATAAAACTGAAAATGAAAAATATGGAAATAATTGCTTTGTAAATG
AACTTCTAATTTATAAACAACTCAAATTACGTTAGTAAAAAAT
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