EMLSAG00000012318, EMLSAG00000012318-695084 (gene) Lepeophtheirus salmonis
Overview
Associated RNAi Experiments
Nothing found Homology
BLAST of EMLSAG00000012318 vs. C. finmarchicus
Match: gi|592831561|gb|GAXK01125983.1| (TSA: Calanus finmarchicus comp605035_c0_seq1 transcribed RNA sequence) HSP 1 Score: 119.783 bits (299), Expect = 1.550e-28 Identity = 95/235 (40.43%), Postives = 135/235 (57.45%), Query Frame = 0 Query: 1 MCCSSKPKPXXXXXXXXXXXXXXXATSVLMFILTYPGDECLLFTSVRGHALIYGNPVGCNYVSYGHCFL-IASAIFLLXYVS---RSNKRDE-------------STRGQSQISVRFPRXXXXXXXXXXXXXXXXXXXXXXXXXXGYLTSCNELHYEAKNQLYARLTIGNPYRFLQMSCSSLXXXXXXXXXXXXXXYEYSGMFYGQ--NRGYKHGRVHNVVQDHEHLLPLQIALE 216 MCC ++ + +I++V++ +L S +V M ++TYPGDECLLF SVRG ALIYG P GC ++S HC + +S +FL+ ++ R +R S G S +S + I F+L I F L+ + V LAGY+ +C EL YE + +LY LT+G+P + + C SLF D DFH RFH DHYE+SG ++ Q N Y+HGR H H+HLL + LE Sbjct: 850 MCCYNQRREKWVISMVMVGVLFSIGVAVPMILITYPGDECLLFVSVRGEALIYGQPAGCTFISASHCLVAFSSIVFLIILITCQRRGGQRQTEPSKSGSIKSLRGSVAGASAVSFGPRAKPTVSLIIFSLIILMFVLITAIVILAGYVVTCGELQYETRRKLYGSLTLGSPVSSVYIQCYSLFRDTDFHTRFHSDHYEFSGQWHAQYKNTAYRHGRPHVWTGTHKHLLDIPTGLE 1554
BLAST of EMLSAG00000012318 vs. C. finmarchicus
Match: gi|592956034|gb|GAXK01002522.1| (TSA: Calanus finmarchicus comp90626_c1_seq1 transcribed RNA sequence) HSP 1 Score: 32.3426 bits (72), Expect = 2.243e+0 Identity = 17/62 (27.42%), Postives = 29/62 (46.77%), Query Frame = 0 Query: 40 CLLFTSVRGHALIYGNPVGCNYVSYGHCFLIASAIFLLXYVSRSNKRDESTRGQSQISVRFP 101 C+ TS+ GH + G+PV C +YG+C+ Y + + +T + +S R P Sbjct: 1177 CIGATSLNGHLTLGGSPVSC---TYGYCYAKDGTDLCQKYNNPCGRSPPTTSAPASLSCRKP 1353
BLAST of EMLSAG00000012318 vs. C. finmarchicus
Match: gi|592907593|gb|GAXK01050782.1| (TSA: Calanus finmarchicus comp799829_c0_seq1 transcribed RNA sequence) HSP 1 Score: 31.9574 bits (71), Expect = 3.235e+0 Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 0 Query: 36 PGDECLLFTSVRGHALIYGNPVGCNYVSYG 65 P EC+LF G +L YG P C+ + YG Sbjct: 445 PLSECILFAWQEGDSLSYGEPHYCDIIGYG 534
BLAST of EMLSAG00000012318 vs. C. finmarchicus
Match: gi|592777385|gb|GAXK01177183.1| (TSA: Calanus finmarchicus comp140732_c2_seq1 transcribed RNA sequence) HSP 1 Score: 31.187 bits (69), Expect = 5.933e+0 Identity = 18/60 (30.00%), Postives = 28/60 (46.67%), Query Frame = 0 Query: 36 PGDECLLFTSVRGHALIYGNPVGCNYVSYGH--CFLIASAIFLLXYVSRSNKRDESTRGQ 93 P EC+LF+ + G+ L YG+ C + Y C + A +F + + RS GQ Sbjct: 1241 PFSECILFSHLEGNKLYYGSEAYCETIGYLFLGCIVGAVVMFYITFKHRSELMGFYNSGQ 1420
BLAST of EMLSAG00000012318 vs. L. salmonis peptides
Match: EMLSAP00000012318 (pep:novel supercontig:LSalAtl2s:LSalAtl2s89:235066:236526:-1 gene:EMLSAG00000012318 transcript:EMLSAT00000012318 description:"maker-LSalAtl2s89-snap-gene-2.20") HSP 1 Score: 669.078 bits (1725), Expect = 0.000e+0 Identity = 326/326 (100.00%), Postives = 326/326 (100.00%), Query Frame = 0 Query: 1 MCCSSKPKPSLIITLVVINILVSSATSVLMFILTYPGDECLLFTSVRGHALIYGNPVGCNYVSYGHCFLIASAIFLLXYVSRSNKRDESTRGQSQISVRFPRISSSFAIGFALFIFFFSLLISAVSLAGYLTSCNELHYEAKNQLYARLTIGNPYRFLQMSCSSLFSDDDFHNRFHHDHYEYSGMFYGQNRGYKHGRVHNVVQDHEHLLPLQIALEGSLAASFFXWFIWLIISIFMFLNRTKKPSFDEFTDVYGNQVPHILNEDVTQITQIPQDEIIYHEQQLQQQQNPYFHQSIPSVMYSTLQPQLLNQNITPGLYVTGFRCVEI 326 MCCSSKPKPSLIITLVVINILVSSATSVLMFILTYPGDECLLFTSVRGHALIYGNPVGCNYVSYGHCFLIASAIFLLXYVSRSNKRDESTRGQSQISVRFPRISSSFAIGFALFIFFFSLLISAVSLAGYLTSCNELHYEAKNQLYARLTIGNPYRFLQMSCSSLFSDDDFHNRFHHDHYEYSGMFYGQNRGYKHGRVHNVVQDHEHLLPLQIALEGSLAASFFXWFIWLIISIFMFLNRTKKPSFDEFTDVYGNQVPHILNEDVTQITQIPQDEIIYHEQQLQQQQNPYFHQSIPSVMYSTLQPQLLNQNITPGLYVTGFRCVEI Sbjct: 1 MCCSSKPKPSLIITLVVINILVSSATSVLMFILTYPGDECLLFTSVRGHALIYGNPVGCNYVSYGHCFLIASAIFLLXYVSRSNKRDESTRGQSQISVRFPRISSSFAIGFALFIFFFSLLISAVSLAGYLTSCNELHYEAKNQLYARLTIGNPYRFLQMSCSSLFSDDDFHNRFHHDHYEYSGMFYGQNRGYKHGRVHNVVQDHEHLLPLQIALEGSLAASFFXWFIWLIISIFMFLNRTKKPSFDEFTDVYGNQVPHILNEDVTQITQIPQDEIIYHEQQLQQQQNPYFHQSIPSVMYSTLQPQLLNQNITPGLYVTGFRCVEI 326
BLAST of EMLSAG00000012318 vs. Tigriopus kingsejongenis genes
Match: maker-scaffold534_size144770-snap-gene-0.33 (protein:Tk11142 transcript:maker-scaffold534_size144770-snap-gene-0.33-mRNA-1 annotation:"---NA---") HSP 1 Score: 194.512 bits (493), Expect = 1.560e-57 Identity = 109/270 (40.37%), Postives = 145/270 (53.70%), Query Frame = 0 Query: 20 ILVSSATSVLMFILTYPGDECLLFTSVRGHALIYGNPVGCNYVSYGHCFLIASAI---FLL-------XYVSRSNKRDESTR-----------------------------------GQSQISVR----FPRISSSFAIGFALFIFFFSLLISAVSLAGYLTSCNELHYEAKNQLYARLTIGNPYRFLQMSCSSLFSDDDFHNRFHHDHYEYSGMFYGQNRGYKHGRVHNVVQDHEHLLPLQIALEGSLAASFFXWFIWLIISIFMFLNR 240 I +S V MFILT+PGDECLLF SVRG ALIYGNP GC++++YGH +I A+ FLL +V R K S R GQS +S+ RI S+ I + F+++++ V L+GYL SC+EL YE + QLY R T+G P + L+M+C SLF D DFH RFH DHYEYS ++GQ R YKHGRVH HEH++P+ ALE SL ++ +W ++ + R Sbjct: 27 IGLSVLACVPMFILTHPGDECLLFVSVRGEALIYGNPAGCHFIAYGHGCVIVGALIMSFLLFFPHRRKGFVKRDLKDTPSNRYPICHQVSFNGAALLLAQHFRSLPGTLPEQMSNGIGQSSMSMNSRHIIGRIYSTKVILLCTCLTMFTVVMATVVLSGYLVSCDELAYETRRQLYGRTTLGTPIKNLEMACYSLFRDVDFHTRFHFDHYEYSSNWHGQYRHYKHGRVHQYSSKHEHIIPVAAALEMSLGGTWIGALLWCVLLGILIYQR 296 The following BLAST results are available for this feature:
BLAST of EMLSAG00000012318 vs. GO
Analysis Date: 2014-04-02 (Blast vs. GO) Total hits: 0
BLAST of EMLSAG00000012318 vs. C. finmarchicus
Analysis Date: 2014-05-09 (TblastN vs C. finmarchicus TSA) Total hits: 4
BLAST of EMLSAG00000012318 vs. L. salmonis peptides
Analysis Date: 2014-05-10 (Blastp vs. self) Total hits: 1
BLAST of EMLSAG00000012318 vs. SwissProt
Analysis Date: 2017-02-10 (Blastp vs. SwissProt) Total hits: 0
BLAST of EMLSAG00000012318 vs. Select Arthropod Genomes
Analysis Date: 2017-02-20 (Blastp vs. Selected Arthropods) Total hits: 0
BLAST of EMLSAG00000012318 vs. nr
Analysis Date: 2017-02-20 (Blastp vs. NR (2/2017)) Total hits: 0
BLAST of EMLSAG00000012318 vs. Tigriopus kingsejongenis genes
Analysis Date: 2018-04-18 (Blastp vs. Tigriopus kingsejongensis proteins) Total hits: 1
Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Properties
Cross References
External references for this gene
Relationships
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene from alignment at LSalAtl2s89:235066..236526- Legend: mRNA Hold the cursor over a type above to highlight its positions in the sequence below.>EMLSAG00000012318-695084 ID=EMLSAG00000012318-695084|Name=EMLSAG00000012318|organism=Lepeophtheirus salmonis|type=gene|length=1461bp|location=Sequence derived from alignment at LSalAtl2s89:235066..236526- (Lepeophtheirus salmonis)back to top Add to Basket
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