EMLSAT00000000646, EMLSAT00000000646-696493 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000000646
Unique Name	EMLSAT00000000646-696493
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s10	supercontig	LSalAtl2s10:897671..902286 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000000646 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000000646	EMLSAG00000000646-683412	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000002821	EMLSAE00000002821-711749	Lepeophtheirus salmonis	exon
EMLSAE00000002822	EMLSAE00000002822-711750	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto780037	auto780037	Lepeophtheirus salmonis	polypeptide
EMLSAP00000000646	EMLSAP00000000646	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s10:897671..902286+

protein sequence of EMLSAP00000000646

>EMLSAP00000000646 ID=EMLSAP00000000646|Name=EMLSAP00000000646|organism=Lepeophtheirus salmonis|type=polypeptide|length=279bp
MIFKAILFLALASIVSAGSPRFIQAPIRISDFSGLRAIPLRSPIRFDTRK
TRVYQTPTLVQRASPSLRQLISLSPTVQKVQKERKIDPGYNFGYSVSDTL
TGDTKTREETRDGDVVRGSYSVADPDGRIRTVTYTADAENGFQAKVTYDG
KEGPVSIANQPPRPIEVSSFDDSAESLFGQIENDDRQFDDSTGSFFGQLG
NDNLQFDDSDAVIIEGRKFPKSSSSRVQSESLSLFHPVSIPQSNIVRLQR
FPLDNPSSFPYTSHFVTSDGRIIEATPLN

mRNA from alignment at LSalAtl2s10:897671..902286+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000000646-696493 ID=EMLSAT00000000646-696493|Name=EMLSAT00000000646|organism=Lepeophtheirus salmonis|type=mRNA|length=4616bp|location=Sequence derived from alignment at LSalAtl2s10:897671..902286+ (Lepeophtheirus salmonis)
CGACCTTTTTGTATATGTCATGTTTCGAAAAACTTTCAAAATTTTCAAAT
CCAGATAAATAATGCTCTTGAACTCAATGTGAGTAGGTTCGATACCTGGT
AGTTCCTAGAGAAGGAAATGTACTTTCTATGTGTGTACTTCAATGACCAT
TTCTAGCTCAGATGGAGTATTGTAATACTATAATCAATGTTGTCTTCGAT
CCTTATTTTGGACTGAAGACTGCAGTCCCGTCCATTTACTATTGTTACGG
TCCAGTCCTGCATATCAGTTCTAAAATTGATAGTGTCCTGTCCTTGATGA
CGTCACTTAAAATATTTCTTCTTTTTGTAATCATTTCTAGTAGTGACAGT
CGAAGGACTGGTCCTCAGACTGGACTGGACCCAATAAATAAGGACTGACA
CAATAATAACTCTAGTATTTAAAAATATATCCAAATTTAGAAATATTTTT
TATGACGACTGAAGTAGTTGTTTATTTTAGCTGTTCCATCCCTTGTTAAT
GTGTACTATGGCTACTACAGTTGTAGGTGAGTATAGGACGTAATTAGCCC
AATAGAAGGGTTTTTTTTTTAATTTGAAGGAGAGGTTGAGATATTCCAGA
AAGCAACAACAACAAAACTAATCCCATTTTTTAACAGTGTTGTCACTTTA
ATATAAGAGTATGTGGAATAGGGGAAGTTGATGCCAATGGCTCTTATCGT
CTTTCATGTAAAGAAATAAAGTATATATATATATATATATATATGAATAT
TTGAATATTGATGTGGCCTTATTCAATTTTATATATATGTGGTATATATA
TATATATAAAGGATTCTAAAGCCTTCTTCTTTTAAACCTTTAAGTAATTT
TTTTTTCCTTTTTAAATAAAAATTCCTTTTCAATAAATTTCTTAAAGTCA
TTTTAAGTGAAAATGACTTGAAGAAAGGGAGATTATTATTGTTATTTATT
GATGCTATTCATATGTGAATATGATGTTTTTGTCAGTCTCTGGTGTACCT
ATATTAATACACATATTGTACGTACCTACGTACGTTCTGTATATCATCGA
CTCAATTCGATGAGTTTTTACAAAAAGAGACGCGAAAGGGAGTGTTTGTA
GTTTTATATTATGAATTTGTTACATAAACAAAAACATTTAGTACAACAAA
ATAATTTTGTCAAAATAGATACATTTCAAACAGAAATCAATTGGACACAT
ATATGCATATCAATCTTCTTTACATTAAAGCAGTAAACCAAGTGGCGAAA
CAAATACTACGTGATCAATATTTGGGGTCTAGGAAAATTGCCCTGGAGAA
AATTGTCTGAGTAGAAAATTGTCATTAGGGAAAATTTCCCGTCATTTACT
AACAAAATCACACTACCTCGGACCAAAACATGTTTTGTGCAAAAATAGCT
TGTAAATTGTTTAGGGTTTTTTTTAAGCTGCTTAGTGTCTTTGCTGTAGC
CTTAATCTCCCCGTAGGCCTTAATAAGGGTCTGTAGCATTAATTACGATG
CATAAAATTAATTTTTTCTTGGTCTAATAATGTGGGTTTTAAACTGCTAG
TAAAGTACACTTACTAAAAAGTTAAACAGTTAATTAATCAATCTAAATAG
ATTCAGTTTTGATTTTATAGTGTAAAGTGTCAACTTTCAAAATTATAGTT
GTTTCAAAAATAGTTCTAGGTGGGTTTATTTATATAAAAAGACGGGTTTT
TATTTTGTGTTTTGTCCAAGTAAATTTATAATATAGAAGTATTACCCTGA
ATTTATGTCATCTTTTAAATTTTGTATCTATATTTACAACTATATTTAGC
TATCTCTTAAACACTTGAATATTTTATTTTTATTTAATATCATCAAACTG
TTGAATTATGTATAAATCCCTGGGAATATTGATTTATTTAACCTTAAAAT
TATAGGAGGCCAAAATATGACTAGTCTTAATGATATTATATGATTACCGA
GTGTGTAACTGTAATTATACAGAATGGGCAACCAAAACTTGCAATAGCAT
GACTAAGTTACAAAAAACTTGATTTTTATAGAATCCAGAAAAAACAACTC
CAAACGGATTTGTGATATATTTAAATTGTATACAGATTTAAAGTTTTTTA
AGTATTAAGCTTTATTTTTATTCATTATGCTCTCCTTCACAAGTAATAAC
AGCCTCGACACGACGGTGACCCGATTGGTAGCTCTTGAAGATGTAGGCCG
TGGGCATGGTGTACCACGCAGTCATAATGACATCTCGGAATGTACCCAAA
TTTGGATGGGAGTTGCGATAGACATTCTTTACCAGGACACTCCAAACTTC
AAAGTCCGGGGGTTGAAGTCTGGAGTAGGGCCTCATGGAGGCAGGKCAGA
AGTCTGCTATTTTGTTACTGCAGAAGTGTTGGCTCTTCTTGGCTGTATGG
GCCTGTAATGGACTTATCGATGAAGTAGGCAGTCTGGATGGAGATCGATC
TCTGCAGTGTTCTCGGTACTGACATCGGCGCAGACGAGATCGTACACGAA
TTTGCCTTTTTTGTAGTTGCTCCTACACTTTTAAACATAGAGATATGGGA
AAAACTCATAATTAAAAATAACGGGTATAAAATTGTCATTAAATTCAAGT
TTTGGTTCCCCACTCTGTATATCTGAAATATAATGAAATAATTCATCGTT
GCAGATTCATAAAAAAATAAGAATCCCAAACCTATTTACAGTTTCAAAAT
CCTATTTTGTTTTTTAACTTTAAATCCCTTTCTGCCTGAGTAAATTGGGA
AAGGGAGGGGGGGGGGGGTTGTCTCGCTGGGCCTTGATTTGGATTTTTTC
TTGGAGGGTGAGTGGATGACATTTAAGAAGTTGATTTTTTATTCATGTGA
AAAACTGTATTTCTATCTTTATTTTAGAAGAAGTTAAAAAAGAGTTTTTA
AATTCACATCTTGACATCATAGCTCCAATTTTTGAGTAATTTAATAACAA
CCATTGTTGTTTTTGACGCAGAAGGTTAGCAAAATCTTTTAACTCCCCCT
CATACCCATGGCTACATATAATAGCCCTAATAAAAGCTGATAGGATCGAA
CGATTTATTTTCTGTACTGGATTGGATTGAAAATTATAAGACAGACACAA
CACGGTATATTTTTGTGTATTTATAAAAGAATGCAGTTGGTTTATAGAAA
GATATATTTTCATATGCCTATTATGTATATATACATAAATATGTAGGTAT
TTCTGTCTTAATATACAAATCAAACCCTGTTTTCAATTAAAAGACAATAT
CAATCAGTAAATAAACGAAAAATGTGGAAAATATTCTTATGGTTTCTTTT
TTAACAGAAAAATAACATTCCAAACGGTCAGTGAACAAATTAATACATAC
TTTTTTTAGAGGGGGGAGGGGGGATAACTCCAAGACAGAATCAGGGCGTG
TGACAAGTCTCTCCATGACCTGATGTGACATTGTTGTAATAATGTTGTTT
CTGTTTCTAATGATGATGAACATATAAAAGGATGTGTTCCTTGACTAGAT
GATATCAATCTTCTCAGAAAGATCTTCACGAGAATATCTTTTACTCTACA
AAAAAAATGATTTTTAAAGCTGTAAGTACTATAGTTATAATATATTAGTT
TCTTTCTGGACTTAAACGAGACCTTTTTTTTTTCAGATATTGTTTCTTGC
TCTAGCTTCCATAGTGAGTGCTGGTTCTCCAAGGTTCATTCAAGCTCCAA
TTCGGATCTCTGACTTTTCTGGCCTTCGTGCTATTCCCTTAAGAAGTCCA
ATTCGATTTGATACAAGGAAGACAAGAGTGTATCAAACTCCGACGCTTGT
TCAAAGAGCATCTCCATCCCTTCGTCAACTTATATCGCTTAGTCCAACCG
TACAGAAAGTACAAAAAGAAAGAAAAATCGATCCTGGCTATAACTTTGGA
TATTCCGTATCTGATACATTGACTGGAGATACAAAGACAAGAGAGGAGAC
CAGGGACGGAGATGTAGTTCGGGGCTCATATTCTGTCGCTGATCCTGATG
GAAGAATTAGAACGGTTACATACACTGCAGATGCAGAAAATGGATTTCAA
GCAAAGGTGACTTATGATGGAAAGGAAGGTCCAGTATCTATTGCAAATCA
GCCTCCAAGACCGATTGAAGTATCTTCATTCGATGATTCAGCTGAGTCTC
TTTTTGGTCAAATAGAGAATGATGATCGCCAGTTTGATGATTCAACTGGT
TCTTTTTTCGGTCAATTAGGAAATGATAATCTTCAATTTGATGATTCGGA
TGCCGTCATTATCGAGGGAAGGAAATTTCCAAAATCCTCATCATCAAGAG
TACAAAGTGAATCTCTATCACTTTTTCATCCCGTTTCAATTCCACAATCA
AATATTGTACGTCTTCAAAGGTTTCCTTTAGATAATCCATCCTCTTTTCC
ATATACGTCACATTTTGTTACATCTGATGGAAGAATAATTGAAGCGACTC
CTCTCAATTGATTAGTCGAGTTTTAATGCCATAATTCCTGTATTTTGTAC
AAGTCAGAAAAAGTGATAATTGTAAGATAATTTAGGAAAATTAGAAACTT
CTCTTAGCTTTAAAAATCATAATCTAGATACAAGTTAAAATAATCCAAAT
ACATGTTAATTATGAC

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