EMLSAT00000000742, EMLSAT00000000742-696589 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000000742
Unique Name	EMLSAT00000000742-696589
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s111	supercontig	LSalAtl2s111:16057..20610 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000000742 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000000742	EMLSAG00000000742-683508	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000003233	EMLSAE00000003233-712161	Lepeophtheirus salmonis	exon
EMLSAE00000003234	EMLSAE00000003234-712162	Lepeophtheirus salmonis	exon
EMLSAE00000003235	EMLSAE00000003235-712163	Lepeophtheirus salmonis	exon
EMLSAE00000003236	EMLSAE00000003236-712164	Lepeophtheirus salmonis	exon
EMLSAE00000003237	EMLSAE00000003237-712165	Lepeophtheirus salmonis	exon
EMLSAE00000003238	EMLSAE00000003238-712166	Lepeophtheirus salmonis	exon
EMLSAE00000003239	EMLSAE00000003239-712167	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto769235	auto769235	Lepeophtheirus salmonis	polypeptide
EMLSAP00000000742	EMLSAP00000000742	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s111:16057..20610+

protein sequence of EMLSAP00000000742

>EMLSAP00000000742 ID=EMLSAP00000000742|Name=EMLSAP00000000742|organism=Lepeophtheirus salmonis|type=polypeptide|length=388bp
MAVINQKLGNLLKPLIVARCWTGRSSSGIPIARLKEDKNYLGSARYGGXX
HTVTLLAGDGIGPEMMGYVKQVFKHAGAPIYFEDVALDTNESEKDMFNAI
SSIKRNGCGXKGNXELKXNEPNLKSRNVVMRNELDLFVNVLKCKSQPGIK
TRHSDIDICIVRQNTEGEYAMLEHENVPGVVESLKITTKESVERLCRYGF
ELARKEGRKKVTIVHKANIMKITDGLFLSVGKRVGLDYPEIECNEMIIDN
CCMQLVSNPWQFDVMILTNLYGTIVTNLICGLIGGPGIVSGGNYGPKCAI
FEPGTRNTGSRLVGKNLANPCAMINAGADLLDHLQLHDHAQSIRSAVSKT
LNEDGILTTDLGGDASSSEVVENIIKYVKEDSRKRAPQ

mRNA from alignment at LSalAtl2s111:16057..20610+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000000742-696589 ID=EMLSAT00000000742-696589|Name=EMLSAT00000000742|organism=Lepeophtheirus salmonis|type=mRNA|length=4554bp|location=Sequence derived from alignment at LSalAtl2s111:16057..20610+ (Lepeophtheirus salmonis)
GCTAGATTGATCTGCTTTCGCAAAAAAGGCGAACCAATCAGAAAATACAA
GGGATGTATATAAAATTCAAACAACAAATGATAGGCTTTCCCTTGTTTTT
TTATCTCATTTGTTTTCCCTTTCATGATCAAGTTCCCTTTAATCAGATGT
TCAGGAGTTAAAATTATATTTATACATAAGATATTACATTTGAGTTTTGA
CAATATTTTGAGTCTTGAGAGATGGCCGTCATTAATCAAAAATTAGGGAA
TTTACTGAAACCGTTGATTGTGGCAAGATGTTGGACGGGAAGATCTTCCA
GTGGAATTCCAATCGCTCGGTGAGTAGGTTCTTTTATGAAGGAATTCATT
ACGTTCAAAATCATCAAGGATCGTTACTTGTTATTATTGATGGATTATTA
AATTAAATTAATTTAACGATTGATTATTAATTGACTGTAATTGATATGAT
ATGATTATACAAAATAATAATGATTACCATGAACCAACTAACAATTAATT
AAAAATGTCTATAGTCGTGTGAAAGAACTACATATTATATTGAATTATAT
AACTAATTAGACGGATCGCGCTGTTTCGTTGTTTTGAGTTGGACTTAATT
CTTTACTTTTATAATTTTTACTCTACATATAGGCTTAAGGAGGATAAGAA
TTATCTCGGAAGTGCAAGGTATTTTGTTTCATCATTATATAATATATTTT
CCTGTTGTTGTGCGGATTTCCACCTCTTGGACTCTGTTGTTTCTCTAGTC
TCTAGTACACATACTACATTATAAACTATAATACCACATATTCCTTAATC
AATTCTATGGATTTCCAATTTATTATCCCTTTGGAATTGTTGGACCTTTC
TTTATTCGAAAAATTGTTTCTTATTCATTTTTCTCTTATATTTCAGATAT
GGAGGTCNNNGACATACAGTGACTCTCCTAGCAGGAGATGGGATTGGACC
CGAAATGATGGGATATGTGAAACAAGTTTTCAAACATGCTGGTTAGTTAG
AGGATGTGTTTTTTACATCCTAATTTATATAGTTTGTCATCACCATGATG
TATGATATAGTGGTGTACAGTAGCGTCAGCAAGTTGTAAAATGCTATGGG
GAATCAAAATATTTAATAATTATACTAACAAAGCGAAGGCTTATTAATAA
TCTTGCTCCGGATTTTCAATTAACCACTGATTGTGTACTTAGGGATGGAG
ATTGTTTATGAAGAATTGATTTTATCTCTCTCGCAGTTAACAAATATAAA
TATCTCACAATGCCCATCTTTTTTTATTAATACTGTGCAATATTAAATTC
TATCTTTAGGAGCTCCTATTTATTTTGAAGATGTTGCCTTGGATACGAAT
GAGAGTGAAAAAGACATGTTTAACGTAAATGATTGTCTCTTTAAGATCAA
TTTTTTTATAATAATTTTTTTATCATTCTGGTAACAGGCCATTTCCTCAA
TTAAACGCAATGGATGTGGCTTMAAGGGSAACAWAGAGCTAAAAWCGAAT
GAGCCCAATTTGAAGAGTCGTAATGTTGTTATGAGGAACGAACTTGATCT
ATTCGTCAATGTTCTTAAATGCAAATCACAGCCTGGTATAAAAACAAGGC
ATTCGGATATTGATATTTGTATTGTGCGTCAAAATACAGAAGGTATTATT
AGTGTAATAAATCTTTCAGAGATCCTCCTCATTAATAACTATCGTAGGAG
AATACGCCATGTTAGAGCATGAAAATGTTCCTGGGGTTGTTGAAAGTCTT
AAAATTACAACAAAGGAGAGCGTTGAGAGATTGTGTCGCTATGGTTTCGA
GCTTGCAAGAAAGGAAGGTCGCAAAAAAGTTACGATCGTTCACAAAGCTA
ACATTATGAAAATCACGGACGGATTGTTTCTCTCCGTTGGAAAAAGAGTT
GGTCTAGATTATCCAGAAATTGAATGCAATGAAATGATCATAGATAATTG
CTGTATGCAGCTCGTTTCTAATCCATGGCAATTCGACGTCATGATACTAA
CAAACCTATACGGAACGATCGTCACCAATCTCAGTATGTTCAACTTTGGA
GTTAAAATATTTTTTTATTTTTGCACATACACACGACACATATATTTAAA
AAAACGTAATCATTTTAGTTTGTGGATTGATTGGTGGACCAGGGATCGTG
TCGGGTGGGAACTATGGGCCCAAATGCGCAATTTTTGAGCCTGGTACCCG
TAACACTGGATCAAGATTAGTTGGAAAGAACCTTGCTAATCCATGTGCAA
TGATCAATGCTGGAGCGGATCTTCTTGACCATCTTCAACTCCACGATCAT
GCTCAGAGTATTAGGAGCGCTGTTTCAAAGACTTTGAATGAAGATGGTAT
CCTTACAACTGACCTTGGAGGTGATGCTTCTTCAAGTGAAGTCGTTGAAA
ATATTATTAAATATGTAAAAGAGGACAGTAGGAAGAGGGCTCCTCAGTAA
TTTTTGTTCTTCTAATGACTTGTCATTGTTCATATTTAACTTTTTAATAA
ATTATAGATGAAATCCGATATTATAGAGAAGTTGTTTACTTTCTGAGTGC
AAATTTCTTCAACCACATGTAGAAAGTTATTCCAGAGAGGGAAAACCTTT
TGGAAGAAAAGTTAATGATTAATTAATTAAGAAGACATATATATGTATAT
AACATTTCATTCTCACCATGTTAACATATATGAAAAATGGTCATTTGCAA
GAGTAACCCGCGTTTGTCCTCCAATCGGACCTCCTGGTACAGTTTCACAA
CTATCTAAATATATTGGACTAGTTCCGAGTTTTTCTGCAATCACAGGGAC
ATTTCTGAAAATAATGTGTCACATTTAGAATTATAATTAAGAGCAAGCAA
AGTATAATCGACATAATGTCATAAATGCAAATTTCAAACCTCGTATGTAT
CACTTCAGCATCCGGTTTAATTGGAGGCGTGTACTGATTTTTTCTCTCAG
ATTTCCTTGGTATACATATTAGCTCCACTTCTCCTTCTATCTGACCTTGA
TTGTAGCCTTCTGGGGAATTGAGTGGGATCCATCCTCTGTTAATTAGGAT
GACTTCATCTCTGTTACTCAATTTGAATGGATTGACACACCACCAGCCTG
AGCTGCTATTACTTCCCATGAGGCCACTGGAACTGTGAACGTCTCCACCA
TTTTTAATCAGTGATCTAGGTCCAATAAGAACAGACCTGGAGTAGTCAAA
GGTCCCTCTAACCCTTACTTTTTGATACTCAACACTTCGACATTCCTCAG
GACTAAGAGTGCAATAATTACACATTAATAACAATTGAAGTGCTACACAA
AGATGTAATAAAACTCATTACGTGGCTGGCAGCTCAATAGGTGGCTTGTT
TTGTGATTCAGTCAACTCCTGTATGAGATTGAGTTTCCAGGTCCTTCGCT
TGGTTTGCCAAACTCCGAGTGCAAATGTCGCCAAAGGAACTGCCTATCTA
GGATTTCAACATTAAAAAATGAATTCCATCCACTACAATGAAATTTACCA
AAAGAACAATGCTTGAAGGCTTGAATGGAGATGATTTAATCGGATTCGAA
CTGGATGTTGAAGATACAAACTCTAAGCGTTTCTTAGAAGCATATCCTCG
GAAATGGACTCTTCTCCAGAGGGCCTGAAGAATGCTGGACTTCATTTTTA
TTAATAATGAAGTTTTATAATTTTACCTACATAAGTGAGCTGCGTTATAT
AAGAATTTACCGTCCATTGACGTACATATGATATTTTGTTCTCCGGCCTT
TCTCTACGTCATATATTCATAATAAATAAATAATAAAATTTCTATTTCTC
CAGCCTGCTGCAACACCATGAACGCTCTACGAATAGGTTTTCGCACCTTA
TCTCTCACGGTCCCTAGAACGGAGAGAGTCTTGGACTACAAATCCCTCAT
CAAATTGGGTTTTGTAGACCGTCCTTCAAAACAAGTAGATGTCGGAGATG
CAGATGAAGTCAGTTCAAATGTGGCAGAGCTTTCCCTTGCAAAAACCTCC
GTCTTTCCAGATGAGGAAACGGAGAATCAACTTTTTAATGGAGTAAAATA
TAAAGACTTACCCTATGTGCACCTCACATGTAAAAAAAATAACACCAAAA
TATCCGCCTATGACTCTAAAAACAAATTCCTTTTTTATTCCTCCCCAAAA
ATGTACGGCTTCCTCAACGCAAGTAAAAGAACAGAGGTGGCTAACGTCAC
TACGGGAATCAATATGGGGCAGTCATTGAGGAATGTAGGTATTAAATACG
TTCGAGTGGAAATTGATGGGTTCAATATTGGGAGACTCGCAGCTGTTAAG
GGTATTGCTCAAACAGGCATTCAAATTGCTTCAGTATCTGATGTAACCCA
TGTTGATTGGGGATGGTCCAAGAGAGCAAAGAAACGGAGGCGTGTGTAAT
GTACTTTAATATAAATATCTATAATAATGACATTATTCTACGAATTATAA
CATTAATCATTTAACTAGTAGGAAATGAACGTTGAGCCACGATTATTTAT
TTCGAATAATAAAGAATCCTTTTTATTCAGTTTTCTCTGTTTGTTTGTTT
TTTT

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