EMLSAT00000001919, EMLSAT00000001919-697766 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000001919
Unique NameEMLSAT00000001919-697766
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: female reproduction, reduced offspring viability, shorter eggstrings
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending Publication
LsRXR LsRXR female
  1. Adult
  2. Copepodid
-Missing-
female reproduction, reduced offspring viability, shorter eggstrings
13.03.2015 - 11:54
07.04.2015 - 10:02
Characterization of a novel RXR receptor in the... more
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s132supercontigLSalAtl2s132:616435..622808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Biotypeprotein_coding
Logic nameensemblgenomes
Evidenceexperimental
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000001919 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000001919EMLSAG00000001919-684685Lepeophtheirus salmonisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto778917auto778917Lepeophtheirus salmonispolypeptide
EMLSAP00000001919EMLSAP00000001919Lepeophtheirus salmonispolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000008452EMLSAE00000008452-717380Lepeophtheirus salmonisexon
EMLSAE00000008453EMLSAE00000008453-717381Lepeophtheirus salmonisexon
EMLSAE00000008454EMLSAE00000008454-717382Lepeophtheirus salmonisexon
EMLSAE00000008455EMLSAE00000008455-717383Lepeophtheirus salmonisexon
EMLSAE00000008456EMLSAE00000008456-717384Lepeophtheirus salmonisexon
EMLSAE00000008457EMLSAE00000008457-717385Lepeophtheirus salmonisexon
EMLSAE00000008458EMLSAE00000008458-717386Lepeophtheirus salmonisexon
EMLSAE00000008459EMLSAE00000008459-717387Lepeophtheirus salmonisexon
EMLSAE00000008460EMLSAE00000008460-717388Lepeophtheirus salmonisexon


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000001919

>EMLSAP00000001919 ID=EMLSAP00000001919|Name=EMLSAP00000001919|organism=Lepeophtheirus salmonis|type=polypeptide|length=442bp
MDPTPPTPNHLLNPGYMPQSPVDLKPDASLLLTTLSNPQSTPPSSAYPVG
ESMYGSQAPHPGVHGHARSTQSPPNNTYPPNHPLSGSKHFCSICGDRASG
KHYGVYSCEGCKGFFKRTVRKELTYACRENRDCVIDKRQRNRCQYCRYMK
CLDTGMKREAVQEERHRGSNGPNHNNNNNNNNNNSRNSEEVESSTSGGGG
DMPIERIIEAEDVGEMKQDTSEFLLLDNNSSMSGGGSIGDMEIQRFGLAK
KRIIHQLIEWAKLVPHFSELKVEDQVTLIRGGWNELLVAGLAFXSIKLND
GILLGNGTIVTRENAHEAGVGHIFDRVLVELIAKMKEMQMDKAELGCLRA
IILFNPDAKGLSDVTKVENLREKVYATLEEYTRSVHENEPSRFAKLLLRL
PALRSIGLKCLEHLFFYKLVGDYLNDGNPLEKFIQSLLEECC
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mRNA from alignment at LSalAtl2s132:616435..622808+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000001919-697766 ID=EMLSAT00000001919-697766|Name=EMLSAT00000001919|organism=Lepeophtheirus salmonis|type=mRNA|length=6374bp|location=Sequence derived from alignment at LSalAtl2s132:616435..622808+ (Lepeophtheirus salmonis)
GAAAAAAGAAGAGAGGATGAGGAGATGAAAGAAGAAAAATAAATAAAAAA GGAAGAAAATAGCTAAGAAAAAAAGAAAAGGAGGAAAAGAAGGAAGAGAT CTGCTGCTATCTGTGGTGAGGCAGCTGAGGAAGAAGTGTGTTAGCAGCAG CTTCTGCRTGCTTACTGGGAGTAGTGGTGATTACTGATTAGATGGACGTG GTGTGCTCGTGAGTAGTAGAATACTGAATAGGAGTAGTGTGTGCGTGCTC TTTTCTCAGGATAATAAAATCGTAGCTTGCAGTTTTTTGAAGCCTCAACT CCTTGTTGTTCCTGCTTTCAGTTCTTCATGACGAATACTTGGGAGTGTAT CCGAAGCCGTTAGCCCGTTTGGAATCCAAGAAGTTGAGTTGGCGGAATGG ATCCCACCCCGCCAACCCCCAACCATCTATTGAATCCCGGGTATATGCCA CAATCCCCCGTGGATCTGAAACCGGATGCTTCCCTCCTACTCACAACACT CTCTAACCCTCAGTCCACTCCCCCCTCCTCTGCCTATCCCGTGGGTGAGT CTATGTACGGATCGCAGGCTCCTCACCCTGGAGTGCACGGACATGCTCGA AGCACGCAGTCTCCGCCAAATAATACATACCCTCCAAACCACCCCTTGTC AGGCTCCAAACACTTTTGTTCCATATGCGGGGATCGCGCCTCTGGGAAGC ACTATGGGGTCTACTCCTGCGAGGGCTGCAAGGGCTTCTTCAAGCGAACG GTGCGCAAGGAGCTGACGTATGCATGCAGAGAAAATCGGGATTGTGTGAT TGATAAGCGACAGAGGAATCGCTGTCAGTACTGTCGCTATATGAAATGTC TCGATACGGGAATGAAGAGAGAAGCCGTCCAGGAAGAACGACATCGAGGC TCTAATGGTCCTAATCACAACAACAACAACAATAATAATAATAATAACTC ACGCAATAGTGAGGAAGTGGAGTCCTCTACAAGCGGAGGGGGCGGGGATA TGCCCATCGAGAGGATCATTGAGGCAGAAGATGTGGGGGAAATGAAACAA GATACGAGTGAGTTCCTTCTCTTGGACAACAATAGCAGCATGAGTGGAGG GGGTTCTATTGGGGATATGGAAATACAAAGGTTTGGATTGGCCAAGAAAA GAATTATTCACCAACTCATTGAATGGGCTAAACTTGTACCTCACTTCTCA GAGCTTAAAGTTGAAGATCAGGTTCGTCTCTCTTTCTCCCTCTCCTAACT TTGATTCTCATCTTCTTTATATTATATATCATGGATGTTTAGGTAACACT TATTCGTGGGGGTTGGAACGAGTTGCTAGTTGCGGGMTTAGCTTTTRGCT CGATTAAATTAAATGATGGTATTCTTTTGGGAAACGGTACTATTGTTACT CGGGAAAATGCGCATGAAGCGGGTGTTGGACATATATTCGATCGTGTCCT AGTTGAACTCATCGCCAAAATGAAGGAAATGCAAATGGTTTGTATAAAAT TTTCTTTTTTCTATGTATGGCGGGGACTAACTCAGTCATCATGACAAATT TACTTTTGATTTTCTAGGACAAAGCGGAATTGGGATGTCTACGAGCCATC ATACTCTTCAATCCTGATGCTAAAGGACTCTCAGATGTTACTAAAGTTGA AAATTTAAGAGAAAAGGTATATGCGACTCTCGAAGAATATACCCGTTCTG TTCATGAGAATGAGCCAAGTCGATTTGCTAAACTTCTTTTGCGGTTACCT GCTCTAAGATCTATTGGACTAAAATGCTTAGAACATCTATTTTTTTACAA ATTGGTGGGTGACTATTTAAATGATGGGAATCCATTAGAAAAGTTTATTC AATCTTTACTGGAAGAGTGCTGCTGAAAAGTCATGTTCATGAATATGCTT CTATAGTGAGTCAGAGGAAGAAATGTTTCTATAAACTTTATGCAAAAAAA AAAAAAAATTTAAAAAAATACACACGTACATATATTGTTGTTTTGGTCAT CAAGCCACACATATTTTGACGGTGTAGCTGTTTCAATAGCTCCTTACATC AATTGTCGAATGATTAAATGTGGATTGCTTCATCATATGAAGAGGGGATT TGTATGAGGATAGCTGTCTCATGTGTAACTAGTTGCGATGCTTGTTTGGT TAAAGACAATTGAGCTACTTAAACGAGTAGTTGTTCCTTTGGTTACTTAA TCTCTATTGAAGGATCTTAAAATAAGATGCATGAGATTAATAGTGATGAC CTAATTAAAGTTCAAATAATAATTATTATTAAGATATTATGTAGCAATTG GCTGTATTATAATCAATTATGAAGTTCACAGTTTGTCCATTTTTTTAAAG AACAATCTCCATCTATTTTGTGAGCTTTAATATGGTNGACCTAATTAAAG TTCAAATAATAATTATTATTAAGATATTATGTAGCAATTGGCTGTATTAT AATCAATTATGAAGTTCACAGTTTGTCCATTTTTTTAAAGTAACAATCTC CATCTATTTTGTGAGCTTTAATATGGTATTTCTCTCCCAACAAGAAGCTT CTATTTTGGTGTACTTATATAATATATGTAATCATATTTTTTTAATTATG AAAATAGTATTCAGATCAATCCTTGTTAAATTTATTTTAAATTTGATGGT TCAAGCTTTTTAAAATTTTTTTAAACAATACTTGCAGTCAATCTGTGTTC CATTCAATGTGTTCTTTAAATTTATCCGAATAATTGGTTCTCCCCCCCCC CCCCTTTCTTAATAGTTTTATCGCAATGGATCTGTACTTCTTTTCTTTCT GGAAATCGAATAATTTTATCTCAACGATGATTTTTTTGTAAGATATCCAT TATATTATGATCAAAAATGAAATACTCTTGATTGGCTATACAATTTGTTA TTTTCTTAATATTCTATATATTTTGTTTTAAGGCCCAAAAAATTTGATAT AACACTAAATTTTCTTCCCTATACTATTTTTATGAAATTGTTACAAAACT CTATTTCTTCCGCTTTAAATAATATTATATCATTMTTCTTGTTTATACTT TAACTCAGTTATGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNAAAAAGAGTATTATTGCTTCAAATCCATAAAATAATA ATTATATTATAAATTTGGAAACACAATTTTTGTGTTTCTATAATCATRTT YRTATAWYTTCTATATATGATGCTAATAAATTTTTATGTAATTAATTCAA GGCTGCTATGCTAATTATTCGCAATACGGCTAAAAACCATACTTGTCTCA ACTTAAAGTATTGTAACCAATCAGTGATGACTTACTGTATTAAAAGAAAT GCCGGAATCTGGTCCCATTATTGAAATATATCACGCTGTGTACATGATGC AATTTGTACGGATCATAACGTAATTAATTACAACAACTTATATATATGAC TATTTATTAAGTATGCTTATTTACGAGTGATATTTGGGACAGTGGACGCT TGAGTATTGTAATATAACTATAGGATAGGCACTTTAATTATTCACTTTTA TCAGAAAAGTCGAATATCACCCTATTAATTTATGAACAATCTAATGGAGT TTCAACCATTGAAATATATTTATCAGAAGTACCTAGTGTTAATTCATAAT TTATTAATAGCTTAATCTTATTTTTTTTAGTTGCAATGTTAAAGAATAAA AGATAAATGTCAAGAGTTTACCTACATACATGGAGATCGGACCGGTTCAA CAGTCGTTGTAACACGCCTTTTACATTAAAAAAAAAATGACGTACATATT TTATGTTTTAAGTAACAGCCAACAATTGCATAACTTTTTACTTACTAAAT AGAATATTGATACTCAGACTGTGATACATCATTGTCATTGCTGAAGTACA TCGAGGAAATTGTAGACGAAAGAAAAAGAATAATCAAAATGTCCCTCTTA TCACCACTTCGTACCTTGGCTCAACGTAATTTACAAAAGGGAATCTTAGT CAGGAGTTATCATGACAAGGTATGTWTCGTTGTGTAYCCGCCGTATTAAT CATGTAATATAAATATTAATGGGTTTTTATCCAGGTGATTGATCATTACG AGAATCCTCGAAATGTTGGGAAATTAAACGCAAAGAACAAAAATGTGGGC ACTGGTTTAGTGGGTGCTCCCGCCTGCGGGGRCGKCATGAAGTTACAAAT CGAAGTGGACGATGATGGAAAGATCGTTGATGCCAAATTCAAGACATTTG GTTGCGGCGCGGCCATCGCATCTAGCTCTTTGGCTACTGAATGGATTAAA GGCAAACAAGTAAATATATTTACCATTAATCATTTTTGGATATTTTAATT GTTTGGTTATATATAATAATAGATAAATGAGGCTTCATCCATCAAGAACT CGGATATTGCAAAGGAACTGTCTTTGCCACCCGTCAAATTACATTGTTCA AGTAGGTTATTAATTACGTATTTCTAACTATATTTCTTATTACAACTCCT ATTACGCATTATTCAAAAAGAGGCCTCATTTTATTTTATTAGAATCACTT GCATCAAAATAGGCTCTATCATTGCGTCCAAGGCTCTGATTGATAGATGT TGGACCCAGAGGCGTCGCTAGCTCCTTTTTAGGGGCTCAATCCCCCCAAA TTTCTGAAGTAGACCCCCCTTCCCTAATTTTTTAAATCACATGTTAGATT GGGGAAGGGGGGGGGGTGAAGTAATTTCGTATTTTTTGCTTTACTTCAAT GCTTTATAAAAGGTATTGCAATCATCAAATTTAAGCCAAGTATGCCCCGT TCTGTTGAGATAATTTGTTGTGAGCGATAGTTCAACTTCATAATGCCCTT TTCGTAGAAGCCCTTGTCCCTATTGAAAAAAAACCTCGGAGAACCAGTTT TCACAGGCCTCTATTGAGGCTAAATTTGTACCCACAAGCGCATTGGTCAG GAACAGGTAGTAGTCACTTAGTGCCAGGTCCGGACTGTAGGGATGGATGC ATAAGAATTTCCCATCCAAGCTCCCGGAGCTTCTGGCACGTCATCAAAGA TGACTGAGGCCTGGGGTTGTCTTGATAAAACACAATTCCTATCCTATTCM CCAATTCTTTTTGTATCCAGCCGTTTGCAAATGGTTATCACTCACACCTT TACAATGCCTTATCGTATGATCCGATGAGAACAATAATGAATAAGATATA CTTAGTTTAAAGAAGAATAGAACGAGAAATAAGAAATTACTTTTTCCCTG ACCTATTATATGCGAGTAAAATATACGTACTTATATAAATATTGATATTA CGGTATTGATAATTTTAGGGCTAAGCCCCTCAAAAGATGAAAGATAGCAA CACCCCTGCAGTTGGACCTATTAATAGGCATTGAGTATCACGTGTAGTTA TAACATAAGTCATAACTAACAGATTTATTGATGAGTGTGCCGCAGAAAAT GTGTGTTGGGGGGGGGGGAGGGAGATGTGAATTTATTTTATTGTATTAGA CCAGATTTCATCAATAAAAATGTACTACTCATCAAAAAAGGTTAAAAAAA CATGGATATAAATTAATATTCATTTAGAATTGGATTTCCCGAAGACCGGT TTTAGAGGGGACATTTGCTCAATTGGAGATGCCGTGCGGTAGTTAAAAAA TAGAACTATATAATGTACTGAGAGGAAAATGATTTTATTTCCTCTGCTTT AGAAAGGAAAGAAAGATAAAGGCCTCTCACGTTTATCTTTGCTCCAGATC CAGTTCACGCTAAAACCGGCCCTTCCCGTGGGTTGTGTAGAAAATTATTA CAAGATTTTTTTTTAGAAAGACATAATAAGTCATCAATGGAAGAGGGGGT TTGAATTGGGCTTAAACTTTTAAAAATGTATTCTCTACATATTTATCTAA TAATATTTATTTTCACATTTAGTGTTGGCTGAAGATGCAATCCAAGCGGC GTTGAAGGACTACAAACAGAAGAACACTGCATGAATTCATGTTAATTAAA GAAATAGTTTTTGAGAAGATATTTTTGTCAACTTTTCATTTTTGTAGCTG ATTGAATTTTGCCACAATTATCGGACGAAAGAATCGTTGTTGACTCTTAT TCTATCACCAGTTATTTTTTACAAATTTTCCTTTAATTAGAAAGTATTTA AAATTAATAAATGCGTTGAAATTTATTTTGAATCATTATTGGCTTAAGAA ACAGATGTATGTATAAACTAAATACAAAATACACTCTCATCTAATTTGTA ATAATAATACTTACAGAAGATATTGAAACCTACCTTTTATTAAAAAAAAA ATATTAATTAATTAAAAGCTTTAA
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