EMLSAT00000002328, EMLSAT00000002328-698175 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000002328
Unique NameEMLSAT00000002328-698175
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: reproduction, female reproduction, no eggstrings
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
AS F384 female
  1. PreAdult2
-Missing-
reproduction, female reproduction, no eggstrings
21.08.2018 - 09:08
24.09.2018 - 09:08
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s143supercontigLSalAtl2s143:679982..683460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000002328 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000002328EMLSAG00000002328-685094Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000010301EMLSAE00000010301-719229Lepeophtheirus salmonisexon
EMLSAE00000010302EMLSAE00000010302-719230Lepeophtheirus salmonisexon
EMLSAE00000010303EMLSAE00000010303-719231Lepeophtheirus salmonisexon
EMLSAE00000010304EMLSAE00000010304-719232Lepeophtheirus salmonisexon
EMLSAE00000010305EMLSAE00000010305-719233Lepeophtheirus salmonisexon
EMLSAE00000010306EMLSAE00000010306-719234Lepeophtheirus salmonisexon
EMLSAE00000010307EMLSAE00000010307-719235Lepeophtheirus salmonisexon
EMLSAE00000010308EMLSAE00000010308-719236Lepeophtheirus salmonisexon
EMLSAE00000010309EMLSAE00000010309-719237Lepeophtheirus salmonisexon
EMLSAE00000010310EMLSAE00000010310-719238Lepeophtheirus salmonisexon
EMLSAE00000010311EMLSAE00000010311-719239Lepeophtheirus salmonisexon
EMLSAE00000010312EMLSAE00000010312-719240Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto779299auto779299Lepeophtheirus salmonispolypeptide
EMLSAP00000002328EMLSAP00000002328Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000002328

>EMLSAP00000002328 ID=EMLSAP00000002328|Name=EMLSAP00000002328|organism=Lepeophtheirus salmonis|type=polypeptide|length=876bp
MIFLSTLLIIGILITPSKSTGRITPLLKVNSTACIAENLRLTDRYICDSY
GNIICVGGWSNPTTLCNVPVCDMNGQGCLNGECLYPNVCACEVGWDGPNC
DECIPLGGCRHGSCQKPMECNCKPGWTGGRCSKPQCEGCANGCCHEPNKC
ICDFGWKGHNCTECQTLSNCKHGKCLTHPFQCECFDGWQGLDCSKPICRV
GCHPTYGFCESPGECICKNGWSGRDCTDCVPYPGCNGTCVNSKPWTCTDI
NTNGMAKPDIWSQWSQWSSCSKTCGDGTQKRDRTCLDRNGVSGNCVGKSD
ETRTCSVLACKIDGGWSIWTKWTPCSSTCGTGTKARFRSCSNPIPKYGGK
ICVGXASESAKCFSRYCPVEGRWSSWKSWGGCSVTCGEGTRHRNRYCDSP
SPAHGGPSCFGPPVESTKCIEKECPIDGIWLSWTQWTTCSKTCGPGTQER
TRTCDGPQFGGQSCSGNFTIERDVIPCWQIVVCPTDGEWSEWDTWSPCSK
TCESGSRFRQRHCNNPAPKFGGKTCRGSAIENGVCNADVNCPINGKWNSW
GRWSICSVSCGGGIQGRRRTCTVPQFGGEPCNGQSDQERQCNQIPCPVDG
VWSLWSKWSSCSKTCEGGFRQRIRECISPQLGTELCSGSSREIESCNNKI
SCTTDTSNWNTWSNWSSCSASCGHGLRVRSRACPTKGSCEVGLEFSDGNW
GYWQEWTSCSVSCGKGQKTRGRFCNNPPPSDGGKPCSGYGLEKSYCIQEE
CTTGGSWGQWGTWSACTLTCGNSVRTRARTCHNSSCEGEGIQTERCSVPK
CPIDGGFSQWLLWSQCTADCKGDRGNQSRRRFCNNPVPLHGGKGCAGEIK
QKRYCTGNLHKQETNPDAPCFHIGNR
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mRNA from alignment at LSalAtl2s143:679982..683460+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000002328-698175 ID=EMLSAT00000002328-698175|Name=EMLSAT00000002328|organism=Lepeophtheirus salmonis|type=mRNA|length=3479bp|location=Sequence derived from alignment at LSalAtl2s143:679982..683460+ (Lepeophtheirus salmonis)
GTTGAAAGGACAAAACAGAGTTGTGGAATCCCTAAGTACTTCAACATGAT TTTTCTTAGTACTCTGCTGATTATAGGAATTTTAATAACTCCATCCAAAT CTACAGGTCGAATCACTCCACTCTTAAAAGTCAACAGTACTGCTTGTATA GCAGAGAATCTAAGAGTATTATTTACCCTTGGGAGATTGAAGCCTACGTT TTATCTATATATCATATACCTTTTTGTCTTAGCTCACGGATCGTTACATT TGTGACTCATACGGTAACATTATCTGTGTTGGAGGMTGGTCTAACCCTAC AACACTTTGCAATGTGCCAGTCTGTGATATGAATGGTCAAGGATGTTTGA ATGGAGAGTGTTTGTATCCCAATGTTTGCGCCTGTGAGGTGGGATGGGAT GGACCCAACTGTGATGAGTGTATTCCACTTGGAGGATGTAGGCATGGAAG CTGTCAAAAGCCTATGGAATGTAATTGTAAGCCAGGGTGGACCGGTGGMC GATGTAGTAAGCCTCAATGTGAGGGCTGTGCCAATGGATGTTGTCACGAA CCTAATAAATGCATGTAAGATCCTATAAAAGGAAAGTTTTGACAAATAAA TAATTTAATAATTATGAACAAGTTGTGACTTTGGATGGAAAGGACACAAC TGCACAGAGTGTCAAACTCTCTCAAACTGTAAGCATGGAAAATGTCTCAC TCATCCATTCCAATGTGAATGCTTTGATGGATGGCAAGGATTGGATTGTA GCAAGCCCATTTGTAGAGTTGGCTGCCACCCCACTTACGGTTTTTGCGAA TCCCCTGGAGAGTGTATTTGCAAGAATGGGTGGTCAGGAAGGGACTGCAC CGATTGTGTTCCATACCCAGGATGCAATGGAACTTGTGTCAATAGCAAAC CCTGGACATGCACTGATATTAATACAAATGGGATGGCAAAACCAGATATT TGGAGTCAATGGAGTCAATGGTCATCTTGTAGTAAAACTTGTGGAGATGG GACTCAAAAGAGAGATAGAACCTGTTTGGATCGTAATGGTGTAAGTGGCA ATTGTGTAGGAAAATCTGATGAAACAAGAACTTGCTCAGTTCTTGCTTGT AAAATAGGTAAAATGTTGACTGAAATCTAGTTTTAAATTTCTTATATATT CATAATTTCAATTATCATAATAGATGGAGGCTGGTCGATATGGACCAAAT GGACACCATGTAGCTCCACTTGTGGTACTGGAACTAAAGCTAGATTTAGA TCATGCTCTAATCCTATTCCAAAATATGGCGGMAAAATATGTGTAGGAAG MGCTTCTGAGTCTGCTAAATGCTTTAGCCGATACTGCCCAGTTGGTAATA TCTGTACATATAATTACTAAATTAATCATGTGACCAAGCTAATTAACTTA TAGAGGGACGATGGTCAAGTTGGAAATCTTGGGGAGGCTGTAGTGTGACA TGTGGAGAGGGAACTAGACATCGCAACAGGTACGGTTTTTTCTACTCCTT TATCATCTGTAAGACTTTATGTTGATTAAATATAAATACAATTATGCAGA TATTGTGATTCCCCTTCCCCTGCTCATGGCGGACCAAGTTGCTTTGGGCC CCCTGTAGAAAGTACAAAATGCATTGAAAAGGAATGTCCCATAGGTAAAA ATATATTCGACTTTATATGTTAAACCTATCAATTTCCTTAAATAATCAAA GATGGAATATGGTTATCTTGGACTCAATGGACTACCTGTAGCAAGACCTG TGGACCTGGCACACAAGAAAGAACAAGGACATGTGATGGACCTCAATTTG GAGGGCAAAGTTGTAGTGGAAACTTTACAATTGAAAGAGATGTTATACCC TGCTGGCAGATTGTAGTATGCCCAACTGATGGAGAATGGTCTGAGTGGGA TACTTGGAGTCCATGCAGCAAAACTTGTGAAAGTGGATCTCGTTTCAGAC AAAGGCATTGCAACAATCCAGCTCCCAAATTCGGTGGAAAAACATGCCGT GGAAGTGCGATCGAGAATGGGGTCTGCAATGCCGATGTTAATTGTCCAAT TAGTAAGTATTCAAGTGTTGGCTTTCTGAATATTTATCCACAAGTTTATA GATGGAAAATGGAATTCTTGGGGAAGGTGGTCAATATGCTCAGTATCATG TGGTGGTGGAATTCAAGGCCGTAGAAGAACCTGCACAGTKCCACAATTTG GAGGGGAGCCATGCAATGGCCAGTCTGATCAAGAGAGACAATGTAATCAA ATTCCATGTCCAGTCGGTGAGTAATACAGGCTTTAAATAGTAAAAGAAAT TAAATGTGCCAAGTTATTGAATTGACATTAGATGGAGTATGGTCGCTTTG GTCAAAATGGTCATCCTGCTCAAAAACATGCGAAGGAGGCTTTAGACAAA GAATAAGGGAGTGTATATCTCCACAGTTAGGCACGGAGCTTTGTTCTGGA TCAAGTAGAGAAATTGAATCTTGCAACAATAAAATATCTTGCACAACAGG TTTGAGACAAAAATGAGCTATTTTTTTTCTTCATATTTTAAGAGTATTTT ATATATTTGGTGCATTTCAGATACTAGCAATTGGAATACCTGGAGTAACT GGTCTAGCTGTAGTGCATCTTGTGGACATGGATTAAGGGTAAGAAGTAGG GCATGTCCCACTAAAGGAAGCTGTGAGGGTAATAGCTTTGAGGAAGGAAA ATAGTCAAATCAAGCCCTGTGTCACTGGTAATGAAGTTTACTATATTTTT GTAATAATTGATTATTAGTTGGCCTTGAATTCTCAGACGGGAATTGGGGA TATTGGCAAGAATGGACAAGTTGCAGTGTGTCCTGTGGAAAGGGACAAAA GACACGAGGCAGATTTTGTAACAACCCACCTCCTTCTGACGGAGGAAAGC CTTGCAGTGGATATGGACTTGAAAAATCATATTGCATACAAGAGGAATGT ACCACAGGAGGGAGTTGGGGGCAATGGGGAACCTGGAGTGCATGCACTCT GACCTGTGGCAACTCAGTCAGAACAAGAGCACGAACTTGTCATAATTCAT CGTGTGAGGGAGAAGGCATTCAAACAGAACGGTGCTCAGTGCCTAAATGT CCCATTGGTAAGGACTTTACATTTATATAAAATAGATATGCTACATTGTG TAATACTTCATTAGACGGAGGATTTTCCCAATGGCTCCTCTGGTCTCAAT GCACAGCAGACTGCAAGGGTGACAGAGGAAATCAATCGAGGCGAAGATTC TGCAACAATCCAGTACCATTACATGGAGGCAAAGGATGTGCTGGTGAGAT CAAGCAGAAACGCTACTGCACAGGGAATTTACATAAGCAGGAAACAAATC CCGATGCTCCTTGCTTCCACATTGGAAATAGATAAAAATGTATCATTAAC AACAAACCTACAATTTTTGTATCTTACTACAACAATAAAAGCAATGCAGA CGATATAATATATCAAGTTAATAACAATT
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