EMLSAT00000002836, EMLSAT00000002836-698683 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000002836
Unique NameEMLSAT00000002836-698683
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
H F24 g3536_Tryp3 female
  1. PreAdult2
 -Missing-
-Missing- 		15.01.2013 - 15:07
25.02.2013 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s1638supercontigLSalAtl2s1638:13958..14826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000002836 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000002836EMLSAG00000002836-685602Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000012601EMLSAE00000012601-721529Lepeophtheirus salmonisexon
EMLSAE00000012602EMLSAE00000012602-721530Lepeophtheirus salmonisexon
EMLSAE00000012603EMLSAE00000012603-721531Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto769114auto769114Lepeophtheirus salmonispolypeptide
EMLSAP00000002836EMLSAP00000002836Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000002836

>EMLSAP00000002836 ID=EMLSAP00000002836|Name=EMLSAP00000002836|organism=Lepeophtheirus salmonis|type=polypeptide|length=249bp
MMKFLCALLFLAVAANAGSIMKHSGRIVGGDEVEPNSIPFQISIEISGGY
HFCGGSVMDKDTIITAGHCCTNLKPEDILVVAGEHDFLSMSGDEQKIAVS
EMXRHDKFGTYGPNYDICLLKLKSSLALNEKVKPVALPEKDQEFTGDVVV
SGWGTVEFGGSSSDVLRSVTLQLVSDEYCSDAYDGHTDESMICAGSPGKD
SCQGDSGGPLTQDGTLVGIVSWGNGCAFPGYPGIYGKVSKFIDWIAEQK
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mRNA from alignment at LSalAtl2s1638:13958..14826-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000002836-698683 ID=EMLSAT00000002836-698683|Name=EMLSAT00000002836|organism=Lepeophtheirus salmonis|type=mRNA|length=869bp|location=Sequence derived from alignment at LSalAtl2s1638:13958..14826- (Lepeophtheirus salmonis)
ATGATGAAATTTCTTTGTGCACTGTTGTTCTTGGCTGTTGCCGCCAATGC
TGGTTCTATAATGAAACATAGTGGAAGAATTGTCGGAGGAGATGAAGTTG
AGCCCAACTCTATTCCATTCCAAATTTCAATTGAAATCAGTGGAGGCTAC
CACTTTTGTGGTGGTTCTGTCATGGACAAGGATACAATTATCACTGCTGG
TCATTGCTGTACTAACTTGAAACCCGAAGACATTCTAGTCGTTGCTGGTG
AACACGATTTCCTCTCTATGAGTGGAGATGAGCAAAAGATTGCTGTATCT
GAAATGMCCCGCCACGATAAGTTTGGAACATATGGTCCTAACTATGACAT
TTGTCTTTTGAAATTGAAGTCTTCCTTGGCCCTCAACGAGTAGGATCTGT
CTCATACCATTTCTTTGTCAATAGCTTATAACTATTTTTTTAGGAAAGTC
AAGCCTGTTGCTCTCCCAGAAAAGGACCAAGAATTCACCGGTGATGTTGT
TGTGTCCGGTTGGGGAACTGTCGAATTCGGTGGCTCATCTTCTGATGTTC
TTAGATCAGTTACCCTACAACTTGTTTCTGATGAGTGTGAGACTATAAGT
CCTATTTTTACCTTCAAAATGAATTTACATGTGTAAAGTATATTATAATA
GATTGTAGTGATGCCTACGATGGACATACTGATGAAAGCATGATCTGTGC
TGGGTCACCCGGAAAAGACTCATGCCAAGGTGACTCCGGTGGCCCATTGA
CTCAAGACGGAACCCTCGTTGGTATAGTTTCTTGGGGAAATGGTTGTGCT
TTTCCTGGATACCCGGGAATCTACGGCAAGGTCTCCAAGTTCATTGACTG
GATCGCTGAACAAAAATAG
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