EMLSAT00000003292, EMLSAT00000003292-699139 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000003292
Unique NameEMLSAT00000003292-699139
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
NAG F154 LsHCP1 unknown
  1. Nauplius I
  2. Copepodid
no phenotype
no visible phenotype
19.06.2014 - 00:00
27.06.2014 - 00:00
HCP1 female
  1. PreAdult2
  2. Adult
No difference in heme levels
no visible phenotype
16.08.2016 - 10:31
23.09.2016 - 10:00
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
HCP1 unknown
  1. Nauplius I
  2. Copepodid
none
-Missing-
26.07.2016 - 10:07
02.08.2016 - 10:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s180supercontigLSalAtl2s180:493171..494827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000003292 (primary cross-reference)
Relationships

The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000014399EMLSAE00000014399-723327Lepeophtheirus salmonisexon
EMLSAE00000014400EMLSAE00000014400-723328Lepeophtheirus salmonisexon
EMLSAE00000014401EMLSAE00000014401-723329Lepeophtheirus salmonisexon
EMLSAE00000014402EMLSAE00000014402-723330Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto778142auto778142Lepeophtheirus salmonispolypeptide
EMLSAP00000003292EMLSAP00000003292Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000003292

>EMLSAP00000003292 ID=EMLSAP00000003292|Name=EMLSAP00000003292|organism=Lepeophtheirus salmonis|type=polypeptide|length=484bp
MTSIWKKTRYILDNITLEPVVFLFGLSHGLYSITVQSLYISKVCAVNLNH
SLTICDDIYQHEEIQTEVQKYVSQLQAYNFFLQGLPAVIYSLFAGPWSDI
NGRKAIIVLSCFGYVFNNVIYLLNTVFFFELKAEYLLFECLQDFTGGYVA
FFFACHSYITDITDDSSRTKRMAFLDGIFPIGFLMGLGLSGIIKKKLGFT
YCFSLAIVTSWSSILYTIFFIKERNSSEDQVDNTDDNSTTQSANNKVKKE
PIWKMFKIQHFQAGVKSTLKRREHDLKKYLLFLILIFMLELFLYGGKGSV
MFLYLRKRFKWTEIDFSQFMIVFGIQGLVSQYFVIPFLSHKLKWRDGTII
LIAVGGNIIAGFMFTFANVSWLVYVAGIVSFLGAAISTLLRSLISKCIES
DEIGKVFSVIASGQAVIFMIASPIYSLVYKATLDFFPGLVFLVTSCLYSI
VGFLAIYLYFGLKKVENSRKNAHELREEELLNRN
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mRNA from alignment at LSalAtl2s180:493171..494827-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000003292-699139 ID=EMLSAT00000003292-699139|Name=EMLSAT00000003292|organism=Lepeophtheirus salmonis|type=mRNA|length=1657bp|location=Sequence derived from alignment at LSalAtl2s180:493171..494827- (Lepeophtheirus salmonis)
ATGACTTCGATATGGAAGAAAACAAGATATATTCTTGATAATATTACTCT AGAACCCGTCGTTTTTTTGTTCGGATTATCTCATGGGCTTTACTCCATCA CTGTTCAAAGTTTATACATTTCTAAGGTTTGTGCAGTGAATCTCAACCAC TCTCTAACCATTTGTGATGATATTTATCAACATGAGGAGATTCAAACCGA AGGTATCTAAATATAAATCAAATCTTCATCCTTGAATTTATTTATATGTT TATACCGACATTAATAAATTTATCCAAATTTAGTTCAAAAGTATGTATCA CAGCTCCAGGCCTACAATTTTTTTCTTCAGGGGCTTCCAGCAGTAATATA TTCACTTTTTGCGGGACCGTGGTCGGATATTAATGGACGAAAAGCCATTA TAGTTTTATCTTGTTTTGGCTATGTCTTTAATAACGTCATATATTTATTG AATACCGTCTTTTTTTTCGAACTAAAAGCAGAGTATCTCTTGTTTGAGTG TCTACAAGTAAAGTAATAAGCCACAGTTGAAGGTGTAATGTTTATTATAC ATGTTCATTTTATCTTTTAAGGACTTTACTGGTGGCTATGTAGCCTTTTT TTTTGCCTGTCACTCTTATATAACTGATATAACTGATGATAGTTCAAGAA CAAAACGAATGGCCTTTCTCGATGGAATCTTTCCAATCGGGTTCCTTATG GGATTAGGTCTAAGTGGGATCATTAAAAAAAAGTTGGGATTTACTTACTG CTTTTCACTAGCTATCGTTACCTCCTGGTCATCCATTCTCTACACAATAT TCTTCATTAAAGAACGAAATAGCTCTGAAGATCAAGTTGATAACACGGAT GATAATTCAACAACTCAGAGTGCTAATAATAAGGTTAAAAAGGAGCCGAT CTGGAAAATGTTTAAGATTCAACACTTTCAAGCGGGGGTGAAATCAACAT TGAAAAGGCGTGAACATGATCTAAAAAAGTACTTGCTCTTTTTGATTCTG ATCTTTATGCTTGAGTTATTCCTCTACGGAGGGAAAGGCTCTGTAATGTT TCTCTACCTTAGAAAAAGATTCAAGTGGACTGAAATTGACTTTAGTCAAT TTATGATTGTTTTTGGGATTCAAGGCCTTGTATCTCAATACTTTGTCATT CCATTTCTTAGCCATAAGCTGAAATGGAGGGATGGAACAATCATTTTAAT AGCCGTTGGGGGAAATATCATTGCTGGATTTATGTTTACATTTGCAAATG TGAGTTGGTTGGTCTATGTTGCCGGGATTGTATCATTTTTAGGAGCTGCT ATTTCAACTCTTCTTCGATCCCTTATTTCAAAATGCATTGAGTCAGATGA AATTGGAAAAGTATTTTCGGTCATTGCATCGGGTCAGGCAGTTATATTCA TGATAGCCAGTCCAATATACTCATTGGTATATAAAGCTACGTTGGATTTC TTTCCGGGATTGGTTTTCTTAGTGACATCTTGTTTATACTCTATAGTCGG TAAGATTGTAAAGACATTTTTAATATATTTTAAAGGTTTACATTAATTTA TCATAGGATTTCTTGCGATTTACTTATACTTTGGATTAAAAAAAGTCGAA AATAGCCGGAAGAACGCACATGAACTACGAGAAGAGGAATTGCTCAATAG GAACTAA
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