EMLSAT00000003527, EMLSAT00000003527-699374 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000003527
Unique Name	EMLSAT00000003527-699374
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s1934	supercontig	LSalAtl2s1934:4479..9683 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000003527 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000003527	EMLSAG00000003527-686293	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000015350	EMLSAE00000015350-724278	Lepeophtheirus salmonis	exon
EMLSAE00000015351	EMLSAE00000015351-724279	Lepeophtheirus salmonis	exon
EMLSAE00000015352	EMLSAE00000015352-724280	Lepeophtheirus salmonis	exon
EMLSAE00000015353	EMLSAE00000015353-724281	Lepeophtheirus salmonis	exon
EMLSAE00000015354	EMLSAE00000015354-724282	Lepeophtheirus salmonis	exon
EMLSAE00000015355	EMLSAE00000015355-724283	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto768483	auto768483	Lepeophtheirus salmonis	polypeptide
EMLSAP00000003527	EMLSAP00000003527	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s1934:4479..9683+

protein sequence of EMLSAP00000003527

>EMLSAP00000003527 ID=EMLSAP00000003527|Name=EMLSAP00000003527|organism=Lepeophtheirus salmonis|type=polypeptide|length=354bp
MIGGHACASATVTIPIYTSEISLPKVRSITGSFFLNFYLGGYCLTVILGS
AVHWRITIVSLVIFPIFSAIFLSMAPNSPIWLLQKGRDEEAFKSLLYFRD
DILEVREEIAAIAENLVISKKKNKNMESNSLSDRFRFKLNRLKSPELVKP
LMISIILTAGFEVKIRVDPYLGACINTIGRAAFGILSTGWISKYPRRYVF
LTSIAVMIQGTLMISVYHYLLTNVRYIQISYMCQGELLPSDVKSFGSGIV
GFVDGLSMFVSAKLKEKTNIPSSTSTGLTMFCNAFKSELIGSQKNKAISN
LNKDEKEALTQLINLQSGRVIVIKAADKRSGIVITDFEDTSEVAKEHLNN
PIYY

mRNA from alignment at LSalAtl2s1934:4479..9683+

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000003527-699374 ID=EMLSAT00000003527-699374|Name=EMLSAT00000003527|organism=Lepeophtheirus salmonis|type=mRNA|length=5205bp|location=Sequence derived from alignment at LSalAtl2s1934:4479..9683+ (Lepeophtheirus salmonis)
ATGATAGGTGGACATGCATGCGCCTCTGCTACAGTGACCATACCGATTTA
TACAAGTGAAATAAGCCTTCCAAAAGTTAGAAGTATCACAGGAAGTTTTT
TTCTCAATTTTTATCTTGGAGGATATTGTCTTACTGTTATACTGGGATCT
GCTGTCCATTGGAGAATCACAATTGGTAAGATACTGACTATATGCTGTGA
TGGTTTTATAAAAAACATGGAATATTTATTACTAAATTACTTATTTTTTA
GTTTCATTGGTTATWTTTCCGATTTTTTCCGCCATATTTCTCTCCATGGC
ACCCAATTCTCCAATTTGGCTTCTTCAAAAAGGAAGAGATGAGGAAGCAT
TTAAAAGTCTTTTATATTTCCGTGATGATATTCTTGAAGTAAGAGAAGAA
ATAGCAGCTATTGCAGAGAATTTAGTTATAAGCAAAAAGAAAAACAAAAA
CATGGAGTCAAATAGTCTCAGTGTATTTTCTGATAATTCAAAATTTTACC
AAAACTAATTTCTTTCAATCTAGGATCGATTCCGATTTAAACTAAATAGA
TTGAAGTCTCCAGAATTAGTAAAGCCTCTAATGATTTCAATAATTTTAAC
AGCAGGTTTTGTAGNAATGGAATGGACTGGGTGCTATTTCATTTTATATG
GTCAATTTCATTGAAGTATGTCATTGATTTAAACTTACATTTTTCCTCAA
TACTTAATTCTTTGTCAATTTTGCTCTTTATAATAAGGAAGTCAAAATAC
GAGTGGACCCTTATCTAGGAGCCTGTATCAATACTATAGGGAGAGCTGCT
TTTGGAATTCTTTCTACTGGATGGATCTCCAAGTATCCAAGAAGATATGT
TTTTCTCACATCTATTGCTGTTATGATCCAAGGGACATTAATGATTTCTG
TCTACCATTACTTGTTAACCAACGTAAGTAAATTTCTGTCATCCCATTAT
TTTCCATTTCAAAATTGCTTATTATTTTTTTTATAGGWTTATTTTGTNCA
AATATGTACTTGAGGAAAATCTAATTATTCCTTGGATTCCAGCCATAGGA
TATTTACTGACATCTTATAGTTTTTGTTCAGGGTACATTCAAATCTCTTA
CATGTGTCAAGGTGAACTTTTACCTTCTGACGTAAAATCTTTTGGGAGTG
GCATCGTTGGCTTTGTAGATGGATTGTCCATGTTTGTATCCGCGAAATTG
GTAAAACTTTTTTTTCGTCATTTTGAAGATTAGTTACATGATTGTCTTCA
TTTTAGGCTTTAACTTTGTTGGATACTATGGGAGTGTCTCTTTATTTTGG
CTATTGCACCCTAGTATTGTCAATTTGTTTTATATTTGCATTCTTCTTCT
TACCKGAAACCAAAGGAAAAACTCTACAAGAAATTGAAAAAGGATTCCGA
AAATAAGACGCTGCCTTCAAAATAAATCAACTGGTTATTATATCAAGGTC
AATAGACCTTGGGTTATAGGCCGTACATACATAATACATATATTTGATAC
TCAAATATGTTTCTCTTTCTATCTTCAAATTGGATATACCTACAGAGGAA
AAATTGAAGCTTTATTATTGCAACTTTTTCATAATAAGGAAAACACTTAT
CTAAGCGAAGGGAATTATATTTATATATAATTATTGCCATTCGAATAGGA
GGAAAGGAATCTCAATCCTTTTCAGTTATTCGGACAAATAGCACTTTGGA
GGATCTTGAAAGGAAATGGAAGGTCTCATTATGTGGAGGAGATTGTGACT
TCGTCTCTAACGGAGKATCAGTAAAGAGATGTTTTTTTGCTCAGAGTCGA
ACCTTGGACTGAGAGATGAGTCTGGGAGAAATAACAAGGAGGTGGAAAAA
AATTATGTTATCATGACTCATGGAAAATAGAAGAAAAATTTGTAGTGTCG
TACGTAGAGGGATTTAATCCGCTCCGATCTAATCTTTCAGTCCACGCAGT
TAGACTTCGAGCACAAACTCGATAAAAGACGAAATTACAACTTCCTCCTT
ATAATTAGACATTATACCTACTTTCAAGATCCTAGAAAGTAGTAATCCAA
CAATTTATAATTTCTTTCCCATAGTGAAGGTCTTTCCTAATTAATAAAAG
GTTGTGATTATTCAGTTACAACTTTCGCCCTTTCGGTGTCTCCAATTTCA
AGATAGAAAAAAAAAAATGTGATAGGCAAACATGTTAAGTATATCCCTCA
ATTTTTTGCTGTGATTATTTTAATGTAATCTATTGTAACCTTTTATTTAT
TTTATTTCGAAACAAAGCCTATAAAGGTTGACTTATTTTATGAAATATAA
AAATCATCGTTCTTAATAATAGTGATACATTTATAGTACAAATATAAAAG
GGGAAAACATAAAAAAACGCGGCAGTGCAGAGGGAAAAAAAACAAGTGTC
ACATAAAAAAAAGATTTTCTTAAAATGGGTTAAGGTCAGCCTTACCTCTC
ATGTTCAATCTTTGGTTTTGGTAGGTAGACGGTGTTTTGAGTGGAGAGTC
TCTTTTTGTGGCACAGATAGCTTTGATTTCTTTSATTTAGTATCGAGGTT
GGGAGAGATAGGTCAATCTTTTCACTTAAAATTCGTTGTAGTGTAATCAT
ATCTTTCATTGCACGTCTATGAGACTATGCGAGGAGGCCAAGNNNNCTTT
TGATTTAGCATTCGCTGTTCTCGTTATTTCCCAATCAAGGAAAAAAACGA
CCCATACCTGGCTTGCACCTTTTCTAAGGAGTCAATCAAGCAGTTTCTTG
AAGAATTCCAGATCTCATATCTCTACATTAAATCGGGAGAACATAAAGCT
TATATATTTTTATCATAAACAAAGGGTCACGAATTTTGAAGCTTCTTTTA
ATAAAACCCAGGTTAAGATATGCCTTCTTTATAATGTATTGCATATGCAA
ATCATGAGAGTTGTAATATAAATGTCAAAGAGCGTGGGTCCAAATACACT
GCCTTATGGAACAGATTAAGTTGCGTCACTAGGCTTTGAAATATTGGAAT
TGATCACTATACTCTGTATCCTATTCGTCAACCAGGAACTAAGCCACTGT
AACAACCGATCCTTTATATCGATGTTAGACAATTTAAAGAAAAGTTCCCA
TGAGGGACTTTGTCAAAGGCCTTGCTGAAATCAAAGTATATAACAACACA
GTCAAGTTTACAGTTACGACGACTAACGATTACATTTTAAACAAAAAAAC
TAATTGTCATTCAATTTCTAGGTGAAAAATTACTTCATAGTAGCGTGGTT
AGGATTTTGGAGCTGGAAGGATAGGAATGATAATTATTAATTACTTTTAC
CTATAAAATGATGTAAATCTCATATTAACTAGAAGCCTTTTCTCCTAAAA
CAAAAAAATAGTTCAAAAAAATTTGAACCAATCAACGTTCAGAACAGGAA
TAAGGTATACGAGTATGTTNGTAGAAAAATAAACAGCTAATAAAAAAATA
CATAATCAATTTTCATGTTAAACTGGGAGGTATCGGTCCTTRATATCATT
TTTGTCCAAAGCCCCGTTTATTTCCGTTATTGGTTGTTAAAAAACGCTCT
AAAATTTTAGAGCACTTCGACATCATTTTCATTGATGTTATAGCAATTTA
CCTCAGTTTAACAATTGAATGAGTTTAATAAAACTTTGAGTTTCATTCAT
GAACATGAATAGTCTATCAATTTTGGTTTACATTAAGTATCAATTATTTT
AATAAAAAATGGGGAAGTTTGATTAATTATGTCGCCACTACCTGATAAAA
AAAGATGAAGTCATTTAGCAAATATTTTTCTATGAAATTAAGTCCTTAAC
AGAAACAGACGGGACATTCAAACATTGGGAACATAATATCTCTTAGTTAG
AGTAACAAACTGTGATAAATACACTGTTTCTATGGTTACAAGAGGCAATG
TAAAAAATTCCATCCTTAGATAATTATCTATTCTACAAAAAGTAGTAAAT
TTAATTAGATCCTTACTTCTTAATACAATCAAGTAATCAAGAAAGTCCAA
TTTATTTCCTCATGTGGGGTTGGTTGATAATATATCCATTTCAAACGGAA
GTATATCTGAATTTTTACTCGTATCTAAAGAGAAGATAAAGAATCGACAC
TTGATTAAACATCAATTCTTGCGTCCTTCAACCTAAAAAGGTATTCCATT
GATAACATTAGGGCATTTTATTATGTGGCTATGACATACAGTTTGACTGA
ATTTAACGATTTTTTTTTGCATTAAATTTTGCTATTTGTCGTGAAAAAAG
TATTTAAAAAAATTAATATCGATGCAACTTAAAATCCATTTAACGAGTAG
AAAATGGGATGTATGTATGTGTAATTGATCTTTGAAATAACAATACAATC
CAAATGAAATAAAAAAAGAAAAGAAAAAGGGGTATATTAAGGTGGACCTA
ATTTTTTAAATTTGAGAAATGCTGAGCTGCAAGGGCTGCAAATTTTTCCC
TTTATACTAAAAATATTGTATATATAAATTTTGAACGGTTTTGAAAAATA
TTTAGAGGTAGCTCAACGGCTCCAAAGTTTTAAAATTATAGGATTTTTTT
CAAAAATGAGTGTTTTGACCTCAGTATCATCTAAGCACTAACAAAAGGAT
GTGTGATACATCTTCTCCCGAGTTTCTATAGTTGTAAAGATTCAAAATAA
AAAAATGGCAAACAACAATAATTATGAGCCTGGAATTGTAAATTGTGAAA
TAGCATGTCACACTGTAAATAGTGACAAGAAATAATCATTTGTGCCAAAA
ACCACCTTCAACGGATTCTTACAGGACAGGATTACATAGAATTTTTAGAA
CTCCCAATAATATTTCTTGGTTGTACTACAAACCGTGGAATTAAATTTAT
GTTACCCTTTTCCTATGTGCCAGGCTAGTTAGTTTTTTTAAACTATCCAG
ATGAAGAAAAATCTCCACATTCTGCATTCGAGAAAGAGAAGACCAACATA
CCTTCTAGCACAAGTACAGGACTCACCATGTTCTGTAATGCTTTTAAAAG
TGAACTTATTGGATCACAAAAAAATAAAGCCATTTCTAACCTGAACAAAG
ATGAGAAAGAAGCATTGACACAACTGATCAATCTCCAAAGCGGCAGAGTA
ATAGTCATTAAGGCTGCTGATAAGCGATCGGGTATTGTCATCACGGACTT
TGAGGACACCAGTGAGGTTGCCAAGGAGCATCTGAACAACCCAATCTACT
ACTAA

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