EMLSAT00000005071, EMLSAT00000005071-700918 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005071
Unique NameEMLSAT00000005071-700918
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: feeding, reduced nutrient uptake, no blood uptake, female reproduction, no eggstrings
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending Publication
E F42 g13677_Rheb female
  1. PreAdult2
  2. Adult
 Low reproduction and most are missing blood in the gut
feeding, reduced nutrient uptake, no blood uptake, female reproduction, no eggstrings 		15.10.2012 - 10:19
26.11.2012 - 00:00 		Molecular characterization and functional... more
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s267supercontigLSalAtl2s267:118905..121441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005071 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005071EMLSAG00000005071-687837Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000022170EMLSAE00000022170-731098Lepeophtheirus salmonisexon
EMLSAE00000022171EMLSAE00000022171-731099Lepeophtheirus salmonisexon
EMLSAE00000022172EMLSAE00000022172-731100Lepeophtheirus salmonisexon
EMLSAE00000022173EMLSAE00000022173-731101Lepeophtheirus salmonisexon
EMLSAE00000022174EMLSAE00000022174-731102Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto772602auto772602Lepeophtheirus salmonispolypeptide
EMLSAP00000005071EMLSAP00000005071Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005071

>EMLSAP00000005071 ID=EMLSAP00000005071|Name=EMLSAP00000005071|organism=Lepeophtheirus salmonis|type=polypeptide|length=184bp
MGPPKSRKIALMGAVSVGKSSLAIQFVQGQFVDSYEPTIENTFTKTVKIN
RQEYEICLVDTAGQNEYSIFPLEYSVGIDGYVLVYSIDSPKSLEVCQIIQ
EKLIEFTGNPNVPIVLVGNKNDLYMERYVSFEEGKRRAEEMKAVFLETSA
KENQCVIDIFHKVISEIEKQDGNLPEEEKKCTIS
back to top

mRNA from alignment at LSalAtl2s267:118905..121441+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005071-700918 ID=EMLSAT00000005071-700918|Name=EMLSAT00000005071|organism=Lepeophtheirus salmonis|type=mRNA|length=2537bp|location=Sequence derived from alignment at LSalAtl2s267:118905..121441+ (Lepeophtheirus salmonis)
ATTTACTACGTGAAGAGACAGGAATATTTTCACTGATGACGTCATAAGTG
GACTCTTCAGTACGCAGTATAAATGTGAATGATATTTCTGTGTAGTAACA
AAAAAAAAATAGGAGGAAAGTCTCTCGCGGTTTTTGTATTTTATTTATAT
AATAATATTAATAGTATAATTATCTCATCTCAGACCCTGAGAAAAAAATG
TAATTATTTCCATTTGGACAGCTTCGTTATTCTCGTATATCCCAAAAACA
AGAAAACCCTTTCGCCAATTGTTTTATCTTTACTGTAAGACCCAGTCAAA
ATATCATGGGGCCTCCCAAGTCTCGTAAAATTGCCTTAATGGGAGCTGTT
TCCGTGGGTAAGTGTCTTACATTAACATCACATCGATCAAAGTCATTGAA
CATTAATTATTTTCATGATTACAGGCAAATCTTCTCTGGCCATCCAATTT
GTACAAGGACAATTTGTCGATTCCTACGAACCAACAATCGAAAATAGTAG
ATATATTTTATTTCTCTTGGGCCTTAGTGCACTAATTTGAGACTCCTCAT
CTAATTATGAGTTGATTCATATCCATATTGGATTTCGTATTCGATTTACG
TAGTACATTCTTTTATTAATTACTTATTCGTTTCAAATGAGTGCTGACAC
TTCAATATTATTCTATCTCCTTAAGTACATTCATGTTCAATTGTTTAATT
TTCTTTCTAGCATTTACCAAAACAGTTAAAATTAATAGACAAGAATATGA
AATTTGTCTTGTTGATACAGCAGGCCAAAATGAATACTCTATCTTTCCAT
TGGAATATTCTGTAGGAATAGATGGATATGTTCTTGTATACTCCATTGAT
TCACCTAAAAGCTTAGAAGTTTGTCAAATCATACAGGAAAAATTAATAGA
ATTCACAGGAAACCCAAAGTAATTTCTACTTTATCTTTTTTTAAACACAA
CATTATATCCACTTAAAAATANTCATAATTGATGACGATCTAAAGAAAAT
ATTAATATCTCATTCTATGTACGATATTAAAAGTCCATTTTTATTTACTA
GATATTATTTTTTGTTTTCCAATTCAGAAATGATTTCTACTTTCCTATTT
TTTAGACATTTATCTATATTTTGCAACGATCTGTACATATCTTAACATAT
ATACACTTTAATAAAAAGCTATTTTATTAATGTTTAAGAGTTTAAATACC
TGAATAGTGAAGTTATAATTTATAAAGTTATTCAAGTTAAGTAATATATG
CATATTTTTCATTATAAGAGTTATGCATGCGCGTACACCGTGCTTCTCTT
ATTTATATTTTTTAGCAAAAAAATAAAATAATAATAATAACTTAATGTTA
ATACTTTATTCAGTGTTCCCATTGTCTTGGTTGGCAATAAAAATGATTTG
TATATGGAAAGATATGTTTCCTTTGAAGAAGGCAAAAGAAGAGCTGAAGA
AATGAAAGCAGTGTTTCTTGAGACCTCTGCCAAGGAAAACCAAGTAATAT
TACAATGATCAAAATACATTCTTCGCCTATCTATGAATTTTTTTTTTCTT
TTATAGTGTGTTATAGATATTTTTCATAAGGTGATTTCAGAAATCGAGAA
ACAGGATGGAAATCTCCCAGAAGAGGAGAAAAAATGTACTATTTCTTGAT
GTTCTAAAGAAAATAACCATGATAACTATAATAGTCAAAATTTGGCCTTT
CATCTCAAAGCAATTTGATTTGATTACAATTACTAATATTGAGAATGAAA
GGAAAGAAAGTCCATAATTTTTTGAAGTTTTGTTCAACGGGAAAACTGTT
TGTTCTATTTATTAATTTTTTGTTCAATAACACGTAAAGACTAAACAAAT
CATAATTATAAGATATTTTTATTATAGTAGCTGAACATTTTGCATTTCTT
GAATTATTTTTTTTTACTGTATAGACATAAAGAGACACAAAACATACATG
GTTTTAATTGTTCTGATGAGTTATGTTTTTTTTTTTTTTAAATTGAATGT
TGAAAACATGTTTTATTAGTTAATTTCTATCGGTTTACCTGCTATGTAAT
AGTTTTTTTCTGAGTTAGCGCAAAAAAGATAAAAAAGTAGATGATATAAT
AACCATTTATTCACTTTTTAACATAAACAGAAATGTGACATACCATTACT
TAAAAAGAAGCTCAATGTGTCAATATTTTGAATCAATTTAAATAAATATA
TTATATTATACATATGGTAACTGCTTTCTTTGCTTAATACTAACATACAC
ACAAGTACGTCTTCAAAAGTTGTAAGACATATAATATTTTATTATCATGG
CATTCTAACGAAATTATCTATTTGTAAACTCCAATTAATATCATCAAACC
TAAAAATTATTATTGAAAAAAAAAAATTGCTACGGGTAAAAAAAGAAAGA
GATAGATTGGTTGTTAATTTATGTTAAGAGTTCTTTTGTTGAGATATTGT
TATTTGAGCTTTAGAAATTTACTTTGTAACGTGGAAAGATACTGCCTATT
TTTTGAAATAAACAAAAGCTATTTTTCTCTCTAAAAT
back to top
Add to Basket