EMLSAT00000005167, EMLSAT00000005167-701014 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000005167
Unique Name	EMLSAT00000005167-701014
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Nothing found

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s272	supercontig	LSalAtl2s272:99930..102894 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000005167 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000005167	EMLSAG00000005167-687933	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000022584	EMLSAE00000022584-731512	Lepeophtheirus salmonis	exon
EMLSAE00000022585	EMLSAE00000022585-731513	Lepeophtheirus salmonis	exon
EMLSAE00000022586	EMLSAE00000022586-731514	Lepeophtheirus salmonis	exon
EMLSAE00000022587	EMLSAE00000022587-731515	Lepeophtheirus salmonis	exon
EMLSAE00000022588	EMLSAE00000022588-731516	Lepeophtheirus salmonis	exon
EMLSAE00000022589	EMLSAE00000022589-731517	Lepeophtheirus salmonis	exon
EMLSAE00000022590	EMLSAE00000022590-731518	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto772133	auto772133	Lepeophtheirus salmonis	polypeptide
EMLSAP00000005167	EMLSAP00000005167	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s272:99930..102894+

protein sequence of EMLSAP00000005167

>EMLSAP00000005167 ID=EMLSAP00000005167|Name=EMLSAP00000005167|organism=Lepeophtheirus salmonis|type=polypeptide|length=317bp
MDGTCYSSSECAEKGGRAAGNCAAGFGVCCLFIVDTCGSTISRNNSYFRS
PGFPTAFTVTAATACAFTIQRCQSNICSIRLDFENLIXSEPADGACGANN
FDKITITSPSGFSPPGPGGLCGDGLSGQHMYVDTTLAGAVTFNVDAGTAA
IANRAWNIKVTQIACDDMNRPPQGCTQYFTGPSGSIKSYNFDGGQINDGH
LYSNCIRQEEGFCGIDYSAVGDNDFLLKXATAIKSQDAAIAIDCQETSVV
IPTVLVPAAPPTLLEFCGGKFNTQSLQTEHGVARSTTTPFRFDFRAKTAA
DADGLAGFNLRYSQVPC

mRNA from alignment at LSalAtl2s272:99930..102894+

Legend: exonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000005167-701014 ID=EMLSAT00000005167-701014|Name=EMLSAT00000005167|organism=Lepeophtheirus salmonis|type=mRNA|length=2965bp|location=Sequence derived from alignment at LSalAtl2s272:99930..102894+ (Lepeophtheirus salmonis)
ATACAAACCGTAAAGTCCAATCTAATCCTACAAATCATATTACTGTTTTT
GCATATGGTGTAAGTGCATGGATTCGAGTTAAGTGAGCTTGTACTCGTAA
ATGAGGATTGCTCGATATAGGTGCAGTTGTCAGATGAGGTTCCACCACAG
GAYAATGTAATGAYGCAGCATACTCCATAGCCTGATGCACAAGATCCGGA
GGCGGTTCCACCTAGAGATGAGATATTAGATGGAAAATATCAGGACTTTC
CTTTTCTGAATTCAAAATCCGAAACTTACCTCTGGTTTCACATTCATCAG
CAGTGTAGCAAGTTCCGTTTTTACTTGCACTACCTGTACAAAAAGTGTTC
TAGAATCGTACATATATTAATCCATCAATATCAGGAGAGAAATATATATA
TATACACAAAATTAACTAACCGGGAATGTGACGACATTGAATATGGAGAG
AAGCTTCTCATCTTTCTTATCCTCCACTACATCATTTGCTGTCGCATCCA
GCTCATTGATTGTACACAAGAGAATCAACAGTGATATAAATGAACAAGGG
GAATCTATGCAAGAAATACAAGTTNAAAAAATATATATATTTCAGTAATC
GAAAATAGTTTTTAACCTACACATATTCAGTTTAAATGATTAGGAAATAC
TAATCAAACACTCATAGACCTTTTAAGAAACCTCAAAAAGTACCTTTGAT
CCTTACAAAGCACATTTTTTTTTTTGTGTGACCCTCACCCATCGGGAAAA
CGACGAGTAAGTAAAGGGGTGGGGGATAACAATTTACTTAACATTTTTAT
ACGNNNNNNNNNNNNNATTTTTAYTAGTACTTGATAATTTAAGAAACCCN
ATAAGGAAGTAGCTATTTTGTCCTGAAGATGACAAGACTTCAATTAATTT
TTGTACTCTTTCTTTTGAATATCATTCTGGTATGGGGTGAGTCAAAGGAT
CGTGATGGACGTAAGTTTATTTACCCCTATATTCTACTCGGGATTAACTC
TCAACTCTTTTGATCCCAAGGCTTGTCTCTCTTCAGCGTAGTTTCTTTCG
ATAACACAGAGTGTACATCATCAGATACTTCGGCGAGATGTGTAYGTTGA
GTTACATAGTAATAAAGGGATTTTTTGTTTAATTCTTTGTAATATGTTTG
TAGGGAACATGCTATTCCAGCTCTGAATGCGCTGAAAAAGGAGGAAGAGC
GGCTGGAAACTGTGCTGCTGGRTTTGGAGTTTGTTGTCTATTCATGTAAG
TACATAATTATTGGATTAAAAATAATCTAATTTTTATTATACACAGAGTT
GATACGTGTGGTTCAACCATCAGTCGCAATAACAGTTACTTTAGAAGTCC
TGGATTTCCAACTGCCTTTACTGTAACAGCAGCAACGGCTTGTGCATTCA
CAATTCAACGTTGTCAGTCAAGTATGTCTTATCTTGGAATCACCGAGGTT
TAATGAGWCTATAATCTTTTTTTTTTTTTACAGACATATGTTCCATACGA
TTAGACTTTGAAAACCTTATTMCCTCCGAGCCTGCTGACGGAGCCTGTGG
AGCAAACAACTTTGATAAAATTACAATTACCAGCCCAAGTGGTTTTAGTC
CTCCTGGCCCCGGGGGTCTTTGTGGAGATGGTTTATCAGGACAGCATAGT
AAGTCAATACATAGTGTAAATCGAATGCTTCTTATTCTCATCTTTCTATT
TCTTAGTGTATGTCGATACAACTTTAGCTGGTGCCGTCACRTTTAATGTC
GATGCAGGAACAGCGGCCATTGCAAATCGTGCGTGGAACATTAAAGTTAC
CCAAATAGCCTGTGATGATATGAACAGACCCCCTCAAGGATGTACTCAAT
ATTTTACAGGGCCTTCTGGCTCTATTAAGTCCTATAACTTTGATGGTGGT
CAAATCAACGATGGGCATTTGTACTCCAACTGCATTCGACAGGAAGAGGG
CTTTTGTGGCATTGATTATTCTGCAGTTGGAGATAATGACTTTTTACTWA
AASCAGCCACAGCAATAAAATCACAGGACGCAGCGATAGCGATTGATTGT
GTAAGTACTCCTCTATTAAATTAGAAGAGGATTTTTACAAACAATGATTT
TATCATTTCAGCAAGAGACTTCAGTTGTTATCCCAACTGTTCTTGTTCCA
GCTGCTCCCCCTACTTTATTAGAGTTCTGCGGTGGAAAATTCAATACACA
GTCCCTTCAAACTGAACATGGTGTTGCAAGGAGTGAGTTGAAATATTGAA
TATAATACCAATTTTAATMTTGTCTTCATTTCTCCCGTAATTAGGTACTA
CAACTCCCTTTAGATTTGATTTTCGAGCAAAAACTGCTGCNGATGCCGAT
GGTTTAGCTGGATTCAATTTAAGGTATTCGCAGGTTCCATGTTAACCAAG
ACATTTCATTATGTTAATGAAATCATACAGTTTGTAATTGTAAATGTTTT
ATAATATATGACTTAATAATATGAAGGTTATATAAAAAAGAATTATAAGA
AAATTGAATCCAACTATTTTTATTTTGGTATTACAAAACGATCAATATAA
GACTGCAACTTCCTCTGCATATCGATTGGGGCCAATTCTATGGCTTTTTT
TCCTTCCTTGTTAGTTATAGATGGATCACATCCTATTTTCAAAAGTACTT
CAACACATTGAAAATTTATTTCTTCACATGCAATGTGTAGGGGAGTATTT
CCAATGTTATCCTGTAAATTGGCATTTATTTTATTGGAGAAATGGTTTAG
TAAATAGTTCATCAACCTGAAATTAGAATTAAGATAAGCTCTTTCTATAT
TCAGAAAAGAATCAAATATATATGTACATACTCTACATGACCAACTCCTG
TTGCTCTATGTAAAGAAGTAGCTCCCAATTTATCCTGTACATTTACATCC
GCATTGACATTTTCTAGCAATTTCACAATAGAGATTCTATTTCTGGAGCA
AGCATAGAATAAGGC

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