EMLSAT00000005299, EMLSAT00000005299-701146 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000005299
Unique NameEMLSAT00000005299-701146
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
F367 EMLSAT00000005299 nauplia EMLSAT00000005299 both
  1. Nauplius1
-Missing-
-Missing-
10.02.2018 - 13:00
19.02.2018 - 14:00
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: reproduction, female reproduction, shorter eggstrings
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
AP F367 EMLSAG00000005299 EMLSAG00000005299 female
  1. PreAdult2
slightly shorter gonade and abdominal segment
reproduction, female reproduction, shorter eggstrings
06.03.2018 - 09:00
10.04.2018 - 09:00
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
EMLSAT00000005299 cop + infection Emc3 both
  1. Nauplius1
  2. chalimus and preadult
no proper visible phenotype but maybe quicker development than control
no visible phenotype
09.05.2018 - 09:00
01.06.2018 - 10:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s282supercontigLSalAtl2s282:475306..478588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000005299 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000005299EMLSAG00000005299-688065Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000023155EMLSAE00000023155-732083Lepeophtheirus salmonisexon
EMLSAE00000023156EMLSAE00000023156-732084Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto777999auto777999Lepeophtheirus salmonispolypeptide
EMLSAP00000005299EMLSAP00000005299Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000005299

>EMLSAP00000005299 ID=EMLSAP00000005299|Name=EMLSAP00000005299|organism=Lepeophtheirus salmonis|type=polypeptide|length=182bp
MRRHFFNNAESGVLKTNTPKTAPPNPMMDPSMMTDMLKGNITNMLPMIVI
GGWINWHFSGFVTTKIPFPLTLRFKPMLQRGIELMSLDASWVSSASWYFL
NVFGLRSIYDLVLGENNVADQSRIMQDQMMMPANGMAXDYKQAFKGEWEA
LEITEHAWALKNAEQEMISAFERRKAEGTLYL
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mRNA from alignment at LSalAtl2s282:475306..478588+

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000005299-701146 ID=EMLSAT00000005299-701146|Name=EMLSAT00000005299|organism=Lepeophtheirus salmonis|type=mRNA|length=3283bp|location=Sequence derived from alignment at LSalAtl2s282:475306..478588+ (Lepeophtheirus salmonis)
TCCATTTGCACTCTAGTAAAAAAGCGCACACCAAAAGAAGATGTCGTTCC ATATTCATTTTAGTATTCCCTGCGCTAGCTGTCTGTTCATTCATGCTTAG CAGTGATTATCACTCAGTTCATCGATCAGAAATTAAATCATTGACATAGT GTATTTTGGATGATGACGGATCCCNGAGCTACGACTGGACCCAGCCATCC GGAACTGGGTCTTTATTCCCATTGTTTTGATCGCCTTTTTCATCGGGATA ATTCGTCACTACGTGTCCATTCTTTTGAGTTCTTCCAAGAAAGTGGACTT GAATCAGGTCCGGGAGTCTCAGATCCTTCTTCGCAGCCGTTCAATTCGTG AGAATGCCAAATATTTGCCCAAGCACTCGTTTCTCATGCGCCGTCACTTC TTCAACAATGCTGAGAGTGGAGTCCTCAAGACGAATACCCCTAAAACAGC TCCCCCCAATCCAATGATGGACCCCAGTATGATGACGGACATGCTCAAGG GTAACATTACTAACATGTTGCCAATGATTGTAATTGGAGGATGGATCAAC TGGCATTTCTCAGGCTTTGTCACTACCAAAATCCCTTTTCCCCTCACTCT TCGTTTCAAGCCTATGCTTCAAAGAGGCATTGAACTCATGAGTCTAGATG CTTCATGGGTCTCCTCCGCCTCCTGGTACTTTCTTAACGTTTTCGGACTA CGATCTATTTATGACTTAGTTCTCGGAGAAAATAATGGTAGTACATAATA TAAGACAATAAACCTTCTATTATATTCTATTTTGTAATTACCCTCGTTCA TTTTATATTTTAGTTGCGGATCAATCAAGAATCATGCAGGACCAGATGAT GATGCCTGCCAACGGAATGGCTAKCGACTATAAACAGGCCTTCAAAGGGG AATGGGAAGCACTGGAAATCACTGAACATGCTTGGGCTCTCAAAAATGCT GAGCAGGAAATGATCTCTGCTTTTGAAAGAAGAAAGGCGGAAGGAACACT CTACTTATAATTCTATTGTTCGACCCTAAATTGTAATCTTTTTTCCCCGT TCATTCTTTGTATAAAATTGATTAGTTAGTATACGTATGTTCTGTTGTTT TAAAATTTGTATTTCGTTAATTTATTGTAATTAATCATTAATTATATTCA AAATATCAAGTTCCTTTCATTAAGTTTTAGGCCAATTTAGAGTGCACATT CCTTCCTTGAAAGTTCAGAGACTCATATTGAGAATCTAACGTAATAAATC GATACCATACAAAATGTATMGGAGCCGTAGAGAAGTGCCAAAGGGCATGA GAGTCCAGTATCCACCAGATCGGAGGAAAGTCTAATATTTCTAACAATAT GGAGCCATTTAACAAGAGTATTGCTATTACTCCGAGTTTTACATGCTTTT CCCTTTTCCACCTCACCCCAGCCCAAGCAAACCAACAAACACTATWAAGA SCKCCCACGGCAATGTTANCCATCATWTTMTAGCCATAATCAAATCTTAT TATTGCCATGTAGTATATATGTTGACAAAAAAAGGCCATCATTAGACTCA CCAATCCTAGTGAAAATAAAGGATCCGATTGCCCGTATAATTTAAGGAAA AATGCAATAAGGGAGTAAGACACGACACTGAAAGCAGACAAATAGTCCAT TTTCTCTGTAAAATTATTGTCCTTTGTATGAAACACTGTTGACCAAGTCC AAGTATTAATCGACACTAGAGCATNNNAAGGTCCATACTTGGTACATGTG CGTCCGGGGATTGACTGCTTCTCGATATTTCATTATGAGATAGACATGCG GGATCAAATTAAGGATTGAAGCCAGGACAGATGCTGGTTCTTGAATCCCG AAAAGTCTCACAAATGGCCATTTTCCGTGAAATTGAGGAATTTTAAGTCC TCTCCTTTGAAATTGATCCACTGTCTTCCACATGCATTCATATCCACAAT CTTCTGAACAAGTCCATCCAAATATTCTTTCCAACAATGGCTGATTGTTT CGAAATGTGATGATAGAGGACTCTGAACAGTTTAAGGATTCGCACGCAAT GAGGCAACGCCTCTGAATGTTTGAAGAATCTCCCAATGATCCTTCCACAA TAAATGGAACATATAAAAAATACAATATACACAAATAGATTGAAGGTGTC ATCATAATGAATTAAAATGAACTGATATATTTTCGGATTTGATAGACATA GGACGTATTAAATTAAGCTGTACTCCTCATGGGGGGAGATACAAGAATTA CCCCATCACCACGGACAAATAGCATTGGTATATTCCTTTTGGTAGTCCTG TACACTTCTTCATAGGTTTCTTCATCAATTTCAATTGAAGTAACGGTTTC CTCTACTTCTCCGAGGATCATATTTAAATGCTGATCATATGCCTGAAAAT AAAAGGAAGCCCTCTAACTAAGTTGTATAATAAATAGATTCAATTTTCCC AGGTAGTCTCTTATTGCAATGCATATATCTCATAAGATTTATTTATTACC AAATGGAGATATGTTTGCATTTATTGATACTGGATTTAAAACATGGATTT GAGACAAAGAGGGAACAACCGTTAGAAACTACTGAAAAATGCATAGTGAA TACTAATCAAGGCTGAGAAAAGCATGGCCGATAAGAATTTATAAGCTTAA TAGTAACATATTTGGATGTTTAAATTAATCACATTGATACGAAGTAAGAC TATCTCCCAAGTCATATTATTAATATCTGAGCAACACTACTATTTAGAAA TGGGAAGATAAAAAGGGATGTTGATATTTTTCACTAAAAAAACTGGTAAA CATCAAGGATCCCATTCACTAATATTCCTAAATTAGGGAAGGATATCTTA AGGGATTTAAGTAATTTGAATAGTCTACCTGGAATAATCCAAGGGGAAGA GAGAGAGAGAGAGAAAATAAATAAATGAAGATTCCGCCATTCAATTCGGA GGGAAAACCTAATTCAATGAATTAAAAATGAGTATTAAAAGATTACTTAC GTTTAATCGACCCTTTAACTCTCTTTCATTCCGCATTTTAACGTAAATCC TTTCATCCAAGGAGAGACGAATCAAATCAAGAGGTTCTTCAACTGTTAAG GCTGCGCCAGCATTAGCCTGAAATCAAGCCAACCAAGAATTGTTTTAACC TCTGAATAAACTATGTTTTGGTCCCCTCCCCCCCTCCCTATCTAAAAAAC AGTAATATTTGTAATAACCTAATGGATACTATGTACATATATATTTGAAG TCATGTAAGTCTGGATGGACATTAAAAATGAAG
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