EMLSAT00000008221, EMLSAT00000008221-704068 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000008221
Unique NameEMLSAT00000008221-704068
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
neverland nvd unknown
  1. Nauplius1
-Missing-
-Missing-
14.04.2015 - 12:46
23.04.2015 (All day)
Neverland AD F 1 nvd female
  1. PreAdult1
non
-Missing-
08.05.2015 - 13:12
08.06.2015 (All day)
neverland nvd unknown
  1. Nauplius1
non
-Missing-
24.07.2015 - 13:01
30.07.2015 (All day)
Neverland fragment 2 nvd both
  1. Nauplius1
non
-Missing-
24.07.2015 - 13:04
30.07.2015 (All day)
Halloween gene nvd,dib,shd unknown
  1. Nauplius1
Non
-Missing-
08.10.2015 - 12:55
14.10.2015 (All day)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s495supercontigLSalAtl2s495:91559..93015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000008221 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000008221EMLSAG00000008221-690987Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000036462EMLSAE00000036462-745390Lepeophtheirus salmonisexon
EMLSAE00000036463EMLSAE00000036463-745391Lepeophtheirus salmonisexon
EMLSAE00000036464EMLSAE00000036464-745392Lepeophtheirus salmonisexon
EMLSAE00000036465EMLSAE00000036465-745393Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto771911auto771911Lepeophtheirus salmonispolypeptide
EMLSAP00000008221EMLSAP00000008221Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000008221

>EMLSAP00000008221 ID=EMLSAP00000008221|Name=EMLSAP00000008221|organism=Lepeophtheirus salmonis|type=polypeptide|length=388bp
MTCLIGGWLVFIPMNRVRHIENDSVSRQKVLNRIRRRRGSIPPPYPNGWY
IIAQSTQVTSGSKLRVSALGREFLIYRGLESNEVFVVDPYCPHLGADIYY
GGEVSKDSIICPFHHWKFDGHTGDCISIPYSKNEKRPSTKLKTVESSELN
GHIYIWYHANETERPLWRPVTLETFSTMSYQGRSEYEISCHIQDIPENGA
DVNHLDAIHRTGIIAGGNPGSFKILLSSLLAYHKWEVNWTSDDKTNPHIA
KVSLNHKMIIFGRFQTMDLNVKAYQIGPSIVHLHFQSPFFGEGVMIQSII
PVQPFLQKVIHTFYTNRFWPPPLAKFVLWGESILLERDIAVWNHKKYVKK
PVLIREDALILKHRRWYSQFYSEDSLSVGECNLSKNDW
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mRNA from alignment at LSalAtl2s495:91559..93015-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000008221-704068 ID=EMLSAT00000008221-704068|Name=EMLSAT00000008221|organism=Lepeophtheirus salmonis|type=mRNA|length=1457bp|location=Sequence derived from alignment at LSalAtl2s495:91559..93015- (Lepeophtheirus salmonis)
ATGACATGTTTAATTGGAGGCTGGCTTGTGTTCATTCCTATGAATCGAGT ACGACATATTGAAAATGACTCTGTATCAAGACAAAAAGTTTTAAATAGAA TCCGAAGAAGGAGAGGGTCGATACCACCACCATATCCCAATGGATGGTAT ATCATTGCTCAAAGCACTCAGGTCAGGAGATAATTTTTGTAATGTGCTTG TTCCTTTGATACTTCTACTTAGTGATTATAGGTTACTTCGGGCTCGAAGT TGAGAGTATCAGCATTGGGACGAGAATTTCTGATATACAGAGGTTTGGAA TCGAATGAGGTCTTTGTTGTGGATCCATATTGTCCACATTTAGGTAACCT CATAGCCCTCTATATCTAAGTTTCTTTTATCTCCTTGTTGAGATTTAGAA ACTGATATGATATTCGTAAATACATCGTCTTAAATATGTATAGTTTATAT ATTTTTATCTTTAAGTACCAGAGTAATGACATAATATTTTTGTATTCAAC GTACCAATCTGTAGGAGCGGATATATATTATGGAGGAGAAGTTAGCAAAG ACTCAATTATTTGTCCATTTCATCATTGGAAGTTTGATGGCCATACAGGT GATTGTATCAGCATTCCTTACTCTAAAAATGAAAAGCGTCCATCCACCAA GTTAAAGACTGTGGAATCATCTGAGCTCAATGGCCATATTTATATCTGGT ATCATGCAAATGAAACTGAAAGACCCTTGTGGAGACCTGTGACATTAGAA ACATTTTCTACAATGTCTTACCAAGGTAGAAGTGAATACGAAATATCATG TCATATCCAAGATATACCAGAAAATGGAGCGGATGTTAACCATTTGGATG CTATTCATCGTACGGGAATTATTGCTGGAGGAAATCCTGGAAGTTTTAAA ATTTTATTGTCTTCTCTATTGGCGTATCACAAATGGGAAGTTAACTGGAC TTCTGACGATAAAACCAATCCCCACATTGCCAAAGTTTCCCTTAATCATA AAATGATTATATTTGGGAGATTCCAAACCATGGATTTGAATGTTTGTATA CACATATGTTAATTAAAATGTTATTTATCTGACATTACATCGAGTTTTAG GTTAAAGCATACCAGATTGGTCCCTCTATTGTTCATTTACATTTTCAAAG TCCATTTTTTGGAGAGGGTGTGATGATACAGAGCATAATACCAGTTCAGC CATTTTTACAAAAAGTCATTCATACGTTTTACACAAATCGCTTCTGGCCM CCGCCTCTAGCCAAATTTGTTCTTTGGGGTGAATCCATTCTTCTGGAGAG GGATATAGCTGTTTGGAACCACAAGAAGTATGTTAAAAAACCAGTATTAA TTCGTGAGGATGCATTAATTCTTAAGCACAGACGATGGTATTCTCAATTT TATTCGGAAGACAGTCTTTCCGTAGGTGAATGCAATCTAAGCAAAAATGA TTGGTGA
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