EMLSAT00000010957, EMLSAT00000010957-706804 (mRNA) Lepeophtheirus salmonis

Overview


Name	EMLSAT00000010957
Unique Name	EMLSAT00000010957-706804
Type	mRNA
Organism	Lepeophtheirus salmonis (salmon louse)

Associated RNAi Experiments

Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: no visible phenotype
Gallery Image	Title	Gene or target symbol	Sex/Stage	Phenotype	Date
	AR F244 EMLSAT00000010957	EMLSAG00000010957	female PreAdult2	No visible phenotype no visible phenotype	16.08.2018 - 09:00 20.09.2018 - 09:00

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
LSalAtl2s735	supercontig	LSalAtl2s735:179066..183923 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
ensembl	2013-09-26 .965016

Properties


Property Name	Value
Logic name	ensemblgenomes
Biotype	protein_coding
Evidence	IEA

Cross References

External references for this mRNA


Database	Accession
Ensembl Metazoa (transcript)	EMLSAT00000010957 (primary cross-reference)

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
EMLSAG00000010957	EMLSAG00000010957-693723	Lepeophtheirus salmonis	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EMLSAE00000048987	EMLSAE00000048987-757915	Lepeophtheirus salmonis	exon
EMLSAE00000048988	EMLSAE00000048988-757916	Lepeophtheirus salmonis	exon
EMLSAE00000048989	EMLSAE00000048989-757917	Lepeophtheirus salmonis	exon
EMLSAE00000048990	EMLSAE00000048990-757918	Lepeophtheirus salmonis	exon
EMLSAE00000048991	EMLSAE00000048991-757919	Lepeophtheirus salmonis	exon
EMLSAE00000048992	EMLSAE00000048992-757920	Lepeophtheirus salmonis	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
polypeptide-auto773960	auto773960	Lepeophtheirus salmonis	polypeptide
EMLSAP00000010957	EMLSAP00000010957	Lepeophtheirus salmonis	polypeptide

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at LSalAtl2s735:179066..183923-

protein sequence of EMLSAP00000010957

>EMLSAP00000010957 ID=EMLSAP00000010957|Name=EMLSAP00000010957|organism=Lepeophtheirus salmonis|type=polypeptide|length=410bp
MSMGGARHSLTAYTPSTGPIGLLLIIFFTINSAFSGTRLGLCWIMCEERY
PHLRAQVRDPYPTIGEKAVGPWGRHASTFMITLTLYGGAVVFLVLISQLL
ASLMVELFDIHISLCLWMXIITFFLTPITWMGTPKDFWPIAVGALLTTAA
ATYMIIAQGIIDSENFTTEREFSNPTPLGSFKAFSSIMFAFAGASTFPTI
QADMKRRDKFHISAIMACAILFILYFPIAGIGYYSYGNDAEDNIVLSLSP
GPMRYTIEILLLLHLISAFPIITNPPSQFFECLLNIEPHFNWKRCVFRTL
VTFFLLFIAESIPSFGSILDFLGATSITALTFVFPPLFYMKLIDSSTNDK
DWIQRRISIWERGYCWFLIIIGIIGGACATYTAVLNMVSDDFKMPCYLES
LNETAGDISH

mRNA from alignment at LSalAtl2s735:179066..183923-

Legend: polypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>EMLSAT00000010957-706804 ID=EMLSAT00000010957-706804|Name=EMLSAT00000010957|organism=Lepeophtheirus salmonis|type=mRNA|length=4858bp|location=Sequence derived from alignment at LSalAtl2s735:179066..183923- (Lepeophtheirus salmonis)
ATGTCTATGGGAGGAGCAAGACACAGCCTTACGGCATATACACCTTCAAG
TAAGTGGACACTTTTATCATATATGTAGGTACATATTCTATGTAAATAAT
TGCTTTGATGATTAATCAGTTATAATTCCTTGCAAATATTTGTTGTTTGT
CTGAAATGACGTTGCAAACTAATGCACATCATTTATAGTTATAAAAGCAG
GGTTGTTTTTTTCTCAAACAAATGAATATCTCAAAATTTGGACATTTGTA
TAATGTTAGGATTTTATTAAAGAGGAGAGGGCTCCCTTGGTCTGGGAAAA
CAAAGTATCTGACTTTAGTCAAATTTTACAGAAGAGCCAAAAACGTTTTT
GGAGTTTGCCACCTACATATATTCAATAAAAGTTGCTTTCAAACAATAAT
TTTGAGTTACGTCCAATGGCTTAACTTGTATTTGAAAGTTATACAAAAAT
AACTAACGTTGTAGTATTATCAATTCCTTCAGAAGACTCAAAAATAGCTC
TTTGATTTCTAGATGAATCAGAGTGTGACCCATATTATTATTTAAACTTT
AAAAGACTGGATATTAATTTTTGTTAGATGTATTTCACGTATAAAGTAAT
AACTTAATCCCACGATGAAAATTTATTAAATTTCATGCCACATAATTTTC
TTAATTTTGATTCAAATGTTGGTTCTGACACCAGCTTTTTTGGCCACCCA
AATGTTCTAAAATATACAATCTGAGTGATTTTTATTATAAAAAACCTAGC
TTATTGAAAAAGTCAATAAGTAGAGTCTGTGTGTCATACCTTAGATACTC
TATATTGCCAGGCTTTTATTTAACCATTATATGAGATGTATTATTTTACT
AGACCATAAAAATGTATATACAATTATTTATTTTTTGCAAAATATTTTTG
AAAATTATAGAACATTGCAATAATATCTAATTTATGACCAAAACNCCAAT
TACATTTTTTTGTCCAGACATGGGCAGATTAGTTCTTCATTTTATTAAAT
ACTAGCAGGCATTGCCTTAAGTAATTAGACATTAGATATTAAACACATTT
CAGGGAGGTCCGCAGGATTATATGTATATATTTATTTTTTTGAAAATTTT
TTCAAAAATCCATAGCTAAACACGTAAAATTATATTTTTTGAAAAAAAAA
TTTCAAAATTGAATTTCAAATTTTTCGAAAAAATTTCAAAATCCATAGTT
ATTCAAAGAAAAATAATTTTTTTATAAAAAAAACATTGAAAAAAACAATT
TTTTGGCAAAATATTTCAAAAATCTAAAACTATTACAATAATACAAATTT
TTTGACTCTTTTTTTCAGAAATCCACAGTTGTTTATAAAAAACTAAATTT
AAAAAAAAAAAATTTCAAACATTATTTTTTTTTTTATAGTTTCAATAATT
ATATAATTTTGTGGAAAAACTATAAAACTTGGAAAAAATTTCAAAAATCC
AAAGCTATGTACAAATAATTAAATTTTTAGGAATTTTTTTCTCTGTTGTA
TAATTTGCCCCAAATGATCTTTTTTTTTTTGGGAAAAAAAATCTTAAAAA
AAAAAATTCTTACCCCTATTATCTTGTAACATTTTTTCAACTTGACACAA
AAAAAATATATAGTAATTAGCGAAATTCCTTAATTTGAGGAATACAGCCC
CTTCAGCCCACCCCTTTGGATGCCGCTGAATTTCGCTTGAATAATATAGA
AGATAAGTTGTCAATAAATCCTCACTGTTACTATCCGTCTCTCCGTCGTT
TTTCATGAGCAGACTCTCACGTANNNNNCTTAATCAATTAATATGTTCCC
TCCTCAAGAATAATAATAAGAGTTTAAGAAAAAGGTTTAATATGTTGGGA
TGACTGTTGAGTACTTTACTCCCTAGAAGGTTCACTAATACAAACATACA
AGAATCATAACATTAACATACCAGCACTTATATATAATTCAAATCTTAAC
AAATGTAGACACTGAAAATGCTCAGGAATTTTGATATGTATAAGAGACCA
ATAATAAAAACAAGCAGAAAAAGTTGTCTTTGCATACATGGCCTTTGTAC
CCCATGCAATATTTTCATAAATATGACTCCAATATTAATTCTTATATCAA
TAATATAAGAAGAATGATTGACTTCGCTATAAACAGTACTATTTTTTTTA
GATTGGTACAGTTTCTTTAAATCCGGTATTTAGAACTGGATTTAAATGTT
GAAAAATCAACATTTGAAAGATATTTCCTTAGAATCATCAATTACTCACT
ATCTAAACATCCAAAACTAACAAATAAGATATGATGCCTATAAAATTTTG
TATATTTGTATATAAAAAAACATTCCCTCTGTGATCAAGCATTCTCTTTT
CCTCGGATAAGTTCAATTACGGGTTTGAGTCATTCTCGAGTTTTTTAATC
ATTAATAAAATGTCCCACTTTTTGTCAAAAGTGAATTATTTTTTTAGTGA
AAAAAAGAAAAATATATAAGACCCAAGCATTTTTACCAATAAACCCAACC
CAAAAGTATTTTATTATTACAAACTATNNGTCCGTAGGATATATATATAT
ATATACCATGGGAGAGGGAAAAAYATTWWAWAAMTAAATTTCAAATATAT
ATATATATATTTTTTTTCAATCTCAAGTATTTAATTTTTTTTGAAAAAAA
TTTAAAAAATCCACAGTTATTCACAAAAATAACCTTTTTGTGATATACAT
TAGAAAAAATAATTTCCAAATATTAAATATTTTCGAAAAAATTTTCATAA
TTRACAGCTATTCACAAAATATTAAATTTTTCAAAAATCCCAAGCTGTTG
ATAAAAAATTTAACTTTTTTCGAAAAAAAGTCAAACATCCATAGTAGCTA
TTCGCAGAAAATTAAATTTTTTTGAAAAAATTTTTAAAAATGAAATATTT
TGGACAAAAAATAGAGAAATTAAATTAAATTTCAACTATTAAATTTTTTT
GAAAATTAAATTCAAATATTATATTTCCTAGTAAAAAGCAAATATTATTT
CTTTTTTTTGGGGGGGGGGTACTANAGCCTTCTAGGCCACCCCTTGCCTA
CACCCCTATATCCATAATTAAAATTTATTAAAGTACCATTATGTTTGTGT
AATTTAACTGAAAATCACCAACTTGCCTGCATAAATACCTAATGAAAAGA
TAGGTATCTAATTGAAATATGTACGATTCAACTAATTAACCTAAAGTATA
AAAAAAATTTCTTATTTCTTATTCAATTAGCTGGCCCTATTGGTCTTCTA
TTGATCATTTTCTTTACCATCAATTCTGCATTCAGTGGAACAAGATTAGG
TCTATGCTGGATCATGTGTGAAGAAAGATATCCTCATTTAAGGGCTCAAG
TTCGAGATCCATATCCAACAATTGGGGAAAAAGCAGTGGGKCCCTGGGGT
CGGTGAGTTAAKCCTTCCGTTAAAAATGAAATTATTCTAGATGATTGATA
TTAAAAAATTTTAAAGACACGCTTCGACCTTCATGATTACACTAACTCTC
TATGGTGGGGCAGTAGTATTTCTTGTCCTAATATCTCAACTCTTGGCTTC
TCTTATGGTTGAACTCTTTGATATACATATATCTTTGTGTTTATGGATGG
MCATCATTACGTTCTTTTTAACTCCTATTACATGGATGGGAACACCAAAA
GACTTTTGGTATGTACATCGCGCATGAATTGTTTACTCTTGTTGAATGAT
GAGAATGAATTTCCAATAGTTTATCCTTCCTATTACGTAGACAAACAATG
AACAAATTTCTTTATAATTGCTTAATTAAATTTCTACAATCAAATTTATG
TATGAGTAGTTAGTTTGCAAACAAACATTAACTTGTTGAATCAACAAAAG
TTATAGGTTAAAACATGTAGTAAAAAGATTAATTAAATAATTGATTTAAA
ATTATACCATAGGCCCATTGCAGTGGGAGCTCTTCTTACTACAGCTGCTG
CTACCTACATGATAATTGCCCAAGGAATAATAGATAGTGAAAACTTTACC
ACTGAAAGAGAATTCTCAAATCCCACTCCTCTTGGCTCTTTTAAAGCCTT
CTCGTCCATCATGTTTGCTTTTGCTGGAGCATCCACCTTTCCAACAATTC
AGGCTGACATGAAGAGAAGAGACAAATTCCACATTTCTGCCATCATGGCC
TGCGCCATTCTCTTTATACTCTACTTTCCAATTGCGGGAATTGGATACTA
CTCCTATGGGAATGATGCAGAGGATAACATTGTACTATCCCTGAGTCCTG
GGCCCATGAGATATACTATTGAAATCTTACTCCTTCTACATTTAATATCC
GCTTTTCCCATCATCACCAATCCTCCATCACAGTTTTTTGAATGTCTTTT
AAACATCGAACCGCGTATGTAGTCAGTCAATGATAAGAAATCAAAACCAA
ACTAATAATTCCGTTTACTTTGTTATAGACTTTAATTGGAAGAGATGTGT
TTTCCGTACTCTGGTAACGTTTTTTCTCCTATTCATCGCAGAGTCAATTC
CCAGCTTTGGAAGTATTTTAGACTTCCTTGGAGCCACCTCCATAACGGCT
CTCACATTTGTTTTCCCTCCCCTTTTCTACATGAAACTAATCGATTCAAG
CACAAATGATAAAGATTGGATTCAAAGGTAAAATTTGTATATAAAGTATT
TTACATATCCAAAGTCATTGCTTTCATCCATCATAATAGGAGGATTTCTA
TTTGGGAAAGGGGTTATTGTTGGTTCTTAATTATAATTGGAATAATAGGA
GGTGCGTGTGCCACTTACACAGCGGTCTTAAACATGGTTTCCGATGACTT
CAAGATGCCTTGTTATTTAGAATCCCTAAATGAAACTGCAGGAGACATAA
GCCATTAA

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