EMLSAT00000012943, EMLSAT00000012943-708790 (mRNA) Lepeophtheirus salmonis

Overview
NameEMLSAT00000012943
Unique NameEMLSAT00000012943-708790
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
NAK F226+F227+F205 LsPGES2, LsPGES3, LsPGES1 both
  1. Nauplius1
  2. Copepodid
 -Missing-
-Missing- 		27.01.2016 - 14:00
04.02.2016 - 00:00
NAK F227 both
  1. Nauplius1
  2. Copepodid
 -Missing-
-Missing- 		27.01.2016 - 14:00
04.02.2016 - 00:00
NAK F226+F227 both
  1. Nauplius1
  2. Copepodid
 -Missing-
-Missing- 		27.01.2016 - 14:00
04.02.2016 - 00:00
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s988supercontigLSalAtl2s988:59860..60399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
ensembl2013-09-26 .965016
Properties
Property NameValue
Logic nameensemblgenomes
Biotypeprotein_coding
EvidenceIEA
Cross References
External references for this mRNA
DatabaseAccession
Ensembl Metazoa (transcript)EMLSAT00000012943 (primary cross-reference)
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
EMLSAG00000012943EMLSAG00000012943-695709Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EMLSAE00000058113EMLSAE00000058113-767041Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto770982auto770982Lepeophtheirus salmonispolypeptide
EMLSAP00000012943EMLSAP00000012943Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

protein sequence of EMLSAP00000012943

>EMLSAP00000012943 ID=EMLSAP00000012943|Name=EMLSAP00000012943|organism=Lepeophtheirus salmonis|type=polypeptide|length=179bp
MSSSKCPPKVIWAQTAAKVLVTVCLEDCKDPTVNVEEKKLFFSGVGGKDK
SEYEVTMELFDEVVPEETTKLFLDRVIEITLQKKDVNKGYWTRLIQDKKR
QXWLSLDFLKWRGESDEDSEADLXVNLXGLAGMQGMQGXQENISSGSVQE
IMKMHPDLNDLDQSDSGEDDEEDIPGLMN
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mRNA from alignment at LSalAtl2s988:59860..60399-

Legend: polypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>EMLSAT00000012943-708790 ID=EMLSAT00000012943-708790|Name=EMLSAT00000012943|organism=Lepeophtheirus salmonis|type=mRNA|length=540bp|location=Sequence derived from alignment at LSalAtl2s988:59860..60399- (Lepeophtheirus salmonis)
ATGTCATCCTCCAAGTGCCCTCCCAAGGTGATTTGGGCTCAAACCGCAGC
CAAAGTACTGGTCACTGTGTGTCTGGAAGATTGCAAAGATCCCACAGTTA
ATGTCGAGGAGAAGAAGCTGTTCTTTAGTGGCGTGGGCGGAAAGGACAAA
AGCGAGTATGAGGTGACAATGGAGCTCTTCGACGAGGTCGTTCCTGAAGA
GACCACGAAACTCTTCCTCGATAGAGTCATAGAAATCACTCTCCAGAAGA
AGGACGTGAACAAAGGCTATTGGACCCGGCTGATTCAAGACAAGAAACGG
CAGSATTGGCTCAGCTTAGACTTCTTGAAATGGAGGGGCGAGTCGGACGA
GGATTCTGAGGCGGATTTAGAWGTCAATTTAGAWGGCTTGGCGGGGATGC
AGGGGATGCAGGGGRTGCAGGAAAATATCTCTTCGGGGTCTGTTCAGGAA
ATTATGAAAATGCACCCAGATCTCAATGACTTGGACCAATCTGATAGCGG
GGAAGATGACGAAGAGGACATTCCCGGTCTCATGAACTAA
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