Show in GBrowse|https://licebase.org/fgb2/gbrowse/lsalmonis/?q=lcl|LsalIR331-Anna|LsalIR331 |
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
|
Gallery Image |
Title |
Gene or target symbol |
Sex/Stage |
Phenotype |
Date |
|
|
RNA_AE F255 |
|
both- preadult II male
- preadult I and II female
|
-Missing-
-Missing- |
22.02.2016 - 10:01
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| LSalAtl2s487 | supercontig | LSalAtl2s487:340993..343732 + |
Analyses
This mRNA is derived from or has results from the following analyses
| Analysis Name | Date Performed |
|---|
| race | 2015-04-07 .848711 |
Properties
| Property Name | Value |
|---|
| Identity | 100.0 |
| Coverage | 100.0 |
| Mismatches | 0 |
| Matches | 1893 |
| Unknowns | 3 |
| Indels | 0 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA from alignment at LSalAtl2s487:340993..343732+ Legend: polypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >lcl|LsalIR331-Anna|LsalIR331.mrna1 ID=lcl|LsalIR331-Anna|LsalIR331.mrna1|Name=lcl|LsalIR331-Anna|LsalIR331|organism=Lepeophtheirus salmonis|type=mRNA|length=2740bp|location=Sequence derived from alignment at LSalAtl2s487:340993..343732+ (Lepeophtheirus salmonis)
ATGGTCTTGAAAACTTTGCTCTACTGCCTATGTGTTGTATCCCTCTTTCA
AGTCCCTGTCTCTTACTCCTTCCCTACTTCTGACTATACCTATTTATTCA
ATGATTTAGTTAATTTGTATCCAAGGATACAGGACTGCAGAACTGTTATT
ACACATAGAGTACAATCCAACGATCTTTTAAACACACTTCATTCCATGAA
TCTAAGTGTTATTCAGGATAATCCAAAATTCCCAGCCAAGAAGTTTAAAC
CCTATGTAAGGAGTATGAAGAATTGCTACTTCTCTGTGAGCAATGATCCA
AAGGCATTGAGACGTAATGAGGATTTTAGTTTTACTAATGGTTTAGCTGA
TCATAGCTTATTTAATTTAATGATAAAAGAGTTATCGATCAAACGTACGA
TAGGATCTAAAAGAAAAAGTGAGGATTGTATATATATATCCTTACAATTC
TTTTTTATTGATAAATATTTTTTATTCCAGCTCAATTCCTGATTCGGAAT
CAAACCTTAAAATGGAAGAAAACATTGAGAGATAATGCACCTCGAACCTT
ACACACCAATCTTCTCAGCATTATACCAGAGGATGGTAAAAAAAAAATGT
ATTAATCATATCAATTTAGAGACACTTTTTTCTGTTCAGACAGTAAATAT
GGGCTGTACATCACTTGTGTATATACCCGCAATAACTTTCAAATGCAGTT
AATAGACATTTGGAAAAAAGAGCGTGGATTCCTGAAGCATCGGCTTMAAT
TGAGTGATTTTTGCAATGTAAGTATCGATTGTGTATTTCAATTCGATTCA
TATGACTAATAAAAAACATACAGAAGTCGTCACTAGACGGACTTACACTC
CGCGTTAATTACGTGCCTATTGCGCCTTACATCATGGGTAAGGACCCTGA
GAATCTTATTGGAGTGGATATAGCTCTTGTGAAAGAAGTCAGTCACAAGT
ATAACTTTAATTTGACATTTACACGAACCAAAGCTTGGGGCTCCTACTAT
GAAGAGAGTAATTCCTCAACTGGCCTTATAAAAGAATTGGTAGATGATAA
TACAGATCTAGGGATAGGAACAGTGGCGTACAGTTACCATCGTCATCTTG
TGGTCCGATACACTGGTAAATCTTTCACTACAAGTTTTCAATTCATTAGT
ATGTTTGATTTTTTCAATTGCTTTTCCCTTCAGGAATGATTTACATGCAG
TCCTTTGATTATATTTGCATCAAACCCAAGCCCTTAGACCCATATCAAAA
CATTATTCGACCCTTTTCCCATTTGGTTTGGCTCATTACCTTTCTCTCAG
CAGTAGGAATGTCGCTCATATTTTACATATTTCACAAAACCTATGGGTGG
ATCAATAGGGATTGGATCAAGGATGGAGTTCCCCTAAATGATTTCTTTCT
AATGACATTTGGAAACTTGGTAGAGCAAGGTGATTAATCAAAAACATTTT
ATTTAATTTTATTAAATAGTACTGAAGAATGTAATTAAATTAGAATTCCG
CCTTTTTCACTTTTTTCTAACTTATTAGCTATTTAACAATAAAAAACTTT
ATTAAAAAGAGGAGAAAGTTTTTAACTTTAGAGAAGTGGGGATAGCATAA
GAACAATACGCATTACCTTTTTTCGTATTAATTGAGAGAAGAAAAATATC
ACATTTCACGGGGAAAAAATTAAAATAATATAATTTGTACAATTTACATC
ATCCATTCCAAGAACACTTTTACATACTTTTCATAGTATGTAACCAATAG
AAGTCTGTAATTGTAAATTATGATGTATGTACACACTCTACATCTAATTG
GTGGAACGAGGGGGAAGGGATCAGGCTTCGCTGAACGGAAATAGGATGTT
AACTAATATGCATAATTATAATTTACAACTACATATTATATAAATATCTC
TTTGCACTTGGATGGAGCCCTCATTTAAAGAAAACAAAAATACTACTGTT
ACATAAAACCAACAGGTGAACTTCATTGGTACAAAAATTGGGGCTCAGCC
AGGATCCTCGTGGTTGTATGGAAAATATTTTGTATCCTGATGATTTTTTC
ATTTTGCTGTAATCTACGTGCCATGTTGGTCAAGGTACAATATACACAGC
CTGTGGAAGAGGCTCAAGACGTTGTGGATCAGCAAAGAAAAATTTTCCTC
TTGGGGAATTCCCTTCCAACAGTTCTCCTTGAAACTTCTCCCATTGACAT
TCATCAACAGATAAGTAGTCAATTCTATGGCGAGTATTACTACTTGACAA
AAAACGGAATCATCAGTCAGGAGAATCACACTGCTGTCATAAAAGAGAAT
GGATGCATCGTGTATCCAAAGGTACTGGTCGATGGTTTGAGTAAAGGAAT
ATTTGACGGTAGATTATTCAACATTATTTATATATACATAATATTAAAGA
AAATTTGTTTTATCTTTATCATATAGCCTTTGGATATATGCCTTATCGAT
CTGCTAAAACACCGTTTGGTCTTTTTGCAACAGGAATGGTGAGTCAAAAG
AGAAATTCACCCTGGATCAAGGACTTTACACATGTCGTGGATCATCTCTT
TAATGCAGGCATCAACARCAAACTTCATCGTAGATKCCTTCCACGACAAG
CCTATTTCGTAGAAACAAATAAAGCTACAATTGATCCTCTCCACATAAGT
CATTTCCTCTCCACAATCATCATTTGGGCTATTGGGATTTTTATCTCCAC
AGGGATCTTTCTCCACGAATATTCTAAAAGAACCATTTAG back to top
|
