Show in GBrowse|https://licebase.org/fgb2/gbrowse/lsalmonis/?q=lcl|LsalIR338-Anna|LsalIR338 |
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
|
Gallery Image |
Title |
Gene or target symbol |
Sex/Stage |
Phenotype |
Date |
|
|
RNA_AE F255 |
|
both- preadult II male
- preadult I and II female
|
-Missing-
-Missing- |
22.02.2016 - 10:01
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| LSalAtl2s895 | supercontig | LSalAtl2s895:919..3209 - |
Analyses
This mRNA is derived from or has results from the following analyses
| Analysis Name | Date Performed |
|---|
| race | 2015-04-07 .848711 |
Properties
| Property Name | Value |
|---|
| Indels | 0 |
| Unknowns | 2 |
| Mismatches | 0 |
| Identity | 100.0 |
| Coverage | 100.0 |
| Matches | 1840 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA from alignment at LSalAtl2s895:919..3209- Legend: polypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >lcl|LsalIR338-Anna|LsalIR338.mrna1 ID=lcl|LsalIR338-Anna|LsalIR338.mrna1|Name=lcl|LsalIR338-Anna|LsalIR338|organism=Lepeophtheirus salmonis|type=mRNA|length=2291bp|location=Sequence derived from alignment at LSalAtl2s895:919..3209- (Lepeophtheirus salmonis)
ATGGACACACTCAATTATAACTTTATTTCTGAATATCTAGCGGATGATTT
AGTTTATCGGCTCAAAGGGRTATCAGCTCCTCAATTTGATCAATCTTGTA
GTTTGATCATTTTAGCTTCCTTGAGGTGTAGTTTCATTTATTGGTTTCAA
GAGGTTTCATTCATTTTATGCACTAATTTTTTGACAGTTTGCAAATGATT
CAAAGTTTATGTAGTAAATTCTCATGTCAAGTTTGGAATATACAGGAAAA
TGTGAAACCCTCTTCACTCTATAAGCGCATGAAATTTAGGGACTTTTGGT
GCGAAATTTTTCTTATTGATGATGCCGATCTTATCCCTTACATTGATTGC
TATGATCCAAAAATATGTAGTATTGTCCTAATGCAGGTACTTTATCATAA
AAATGAATATTTGCATTATGATTTGTTCTGATTTGACTATTATAATGTGA
AATAGAAGGATATACATGGATTGTTAGATATGGACGCTGTTTTAAAGACA
TCACAGAATAGATTATTAACCCCTGTCATTCTTTTCTCTCCTACTTCTAA
TGGTGACGTTCAGTTGTCGATTTGGTGTCCACATTGTGGTACAGGTTTGA
ATAAAATTGGATATTGGAATAATTATGGGAATTACATAGTATACCAAGAT
CCCCGTTACTCACTCAACATATATAGTGTGTGCTGTGATGTTCTCGATTC
TGGGCCTATTCGAATGGGTGTTTTACCTCCTGAAGAAGAACATCCCATGG
TACATTGGGGGATGGAATGGTAGTTATTACTTCTTACTATTATATTAAAT
TATATATATTTAAAAGATTCAAATTATAGGTACAAAGGGAAATATAAAAT
TGTTCAAACAGGACTTGTTTATGCTCCTTTTTTCTACATAGCTCAAAAAA
TTGGATTTGATTTTGAGATAGTTCCCTATGTTGAATGGGGAGGCTACAGC
GAAGCTAATAATAATTGGACGGGAATTACAAAAAACATGGTGTATAATGA
TACTATAKACTTCATTTCCTATGCCTCACTTCGCTCTGTCATTAATGAAA
CTAGTGGAAATGTTGCTGATGAACTTGAGGTTTCGATCACTTAATAAAAA
AATGATATAAAATGTTTACCATTTCCAGGTGTACATGGGACCTTTTGATG
TTAAAGAATTTGTTACTATTGTTTGCCCTCGTCCGAGGCCCTTACCAAAG
ATAAATAATATTATCATCCCTTTTTCAAAAAATGTCTGGATAGGAACCTT
TTTTAGTTATTTCATTGTTGGAGGAATACTTAGCCTTGTGTCTTGTATTT
ATAAAAGTTGGAGAATACACCCTGAGGTATGCATAAAAAATATATACATT
GTAACTAAAGANTGTACATTTTTACTTAAATATTAAATTATTTCGTGATT
AAGATCAAACCAGCTGAAAAACCCCTGAAATGGATAAGTAGATTTGAAGT
ATCCTACGGGATACCATTTGGAGAAGGAGTTCCTAATAAATGGATAGGAC
CTTACTCTGCATTTTCTATAATTTTGACTTTTTGGCAGCTGATGGCCATG
GTTCTAATTCTTTCATACACTTGTAACCTAAGGTAAATAAAAAATTAACA
ACATTTCATAATTGAGGAATAAATTTCATTTTATGCCTGCTAAGGTCATA
TCTCATTGTAAACCCGTATGAACGTCCCATAGATAGTCTTGAGGAGTTAA
AAGTCTCAAATTATCAATTTGTCGTTGGGCTATACGAACAAATTTATGCC
TTTGCTGACCCCTATTTGAGAGAATCTATGCACTACTTTCTAGAGAGGGA
TCGGTTAATCATCAAAGATAGTCAAATTTTCCTTCCAGATGTAGTGAAAC
CCGATCAATGTTCTGTTCAGCATTCAACATCAAGTTACTACATGAACTAC
AAAAGTGTAAAAAAGGACGGCATCCCTCAATTCCATGTGGCCCAAGTACC
ATTTAATTCCCCGTTTGTGTCATGGTATTTTAAAAAACCCAATTTGATAT
CCACAAAAATGAGAGAGAATGTAGCAAGAGTTATGGACTCTGGGATGGCA
ATGCGTTTTTATAAGGATAATGTTCCTCCTCTTTATAAGGTTAATAATTT
ATAAATTCAAAACAATGTTTATCCGAAAAATATCTATTATACATATACTT
TTATAATAGGTGAAGGAAGAGAGTAAAATTGAAGCTCAGAGTTTGGATGA
AGTCATTATTTTATTTATTTTTTTAGCAGGAATTTCTGCTGTGTCTGTTC
TCTTATTAATTTTTGAAATAACTTTGGTATATATCCAATGA back to top
|
