lcl|LsalIR8a.2-Anna|LsalIR8a.2, lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1 (mRNA) Lepeophtheirus salmonis

Overview
Associated RNAi Experiments
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Alignments
Analyses
Properties
Relationships
Sequences
Overview
Namelcl|LsalIR8a.2-Anna|LsalIR8a.2
Unique Namelcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1
TypemRNA
OrganismLepeophtheirus salmonis (salmon louse)
Associated RNAi Experiments
Table of all RNA interference experiments conducted using this feature, grouped by Phenotype CV: -Missing-
Gallery Image Title Gene or target symbol Sex/Stage Phenotype Datesort descending
RNA_AE F255 both
  1. preadult II male
  2. preadult I and II female
 -Missing-
-Missing- 		22.02.2016 - 10:01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
LSalAtl2s452supercontigLSalAtl2s452:620907..625580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
race2015-04-07 .848711
Properties
Property NameValue
Indels55
Unknowns0
Matches2170
Identity86.3
Coverage99.7
Mismatches290
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.path1Lepeophtheirus salmonisgene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.exon1Lepeophtheirus salmonisexon
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.exon10Lepeophtheirus salmonisexon
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.exon2Lepeophtheirus salmonisexon
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.exon3Lepeophtheirus salmonisexon
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.exon4Lepeophtheirus salmonisexon
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.exon5Lepeophtheirus salmonisexon
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.exon6Lepeophtheirus salmonisexon
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.exon7Lepeophtheirus salmonisexon
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.exon8Lepeophtheirus salmonisexon
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.exon9Lepeophtheirus salmonisexon
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.cds6Lepeophtheirus salmonisexon
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.cds5Lepeophtheirus salmonisexon
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.cds4Lepeophtheirus salmonisexon
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.cds3Lepeophtheirus salmonisexon
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.cds2Lepeophtheirus salmonisexon
lcl|LsalIR8a.2-Anna|LsalIR8a.2lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1.cds1Lepeophtheirus salmonisexon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
polypeptide-auto1736890auto1736890Lepeophtheirus salmonispolypeptide


Sequences
The following sequences are available for this feature:

mRNA from alignment at LSalAtl2s452:620907..625580-

Legend: exonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1 ID=lcl|LsalIR8a.2-Anna|LsalIR8a.2.mrna1|Name=lcl|LsalIR8a.2-Anna|LsalIR8a.2|organism=Lepeophtheirus salmonis|type=mRNA|length=4674bp|location=Sequence derived from alignment at LSalAtl2s452:620907..625580- (Lepeophtheirus salmonis)
CTTTTTATCAGGGATCCTATGTCTATTTATACAAGGAATTCAAGGGAGTG
GACACATACTACTCTTGATTGAAGAGGAGCAAGGCGATGTGGCAGCAAGT
TTTGAAATTTCACTTTCAAAGGCATTTGATCTTTTTTTCATAACATTCAC
AATTGACTAAAAAAAATATATGTTACAGATACCAAACTTGAAAGTCTCCA
GATTATCCCTTATTCGGGATTTACAGAAAGAACTCTACAATTCCACTTGT
GATCGCTTTTCCTGAAAGGGAGTCTAGGGGATTGTTGACACTACTTACGG
TTATTCTTGGAAGTGACTTTTGAAGGAGGCCTCTGATTTGAAAATCCCAT
ATCTTAAGGTCGACGTTTTTAACTCAAAACTCCTTTTGGTGAGTGTTCTT
TAAATATAATTTATACATATATATGTACATGAGCTTAACTTGAGCTTGAC
AATTAAGCCTGCTATAAAATATATAAACAAACGAAAGGGTGATACTGCTA
TACAACTCTCAGATGGGAATTTGGTTCTCCATGAAAGTGTCTTTACTTTT
CTGGAAAAAATCCATGATTAAAAATCGTGGTTGCGAATGTGGATGAGAAG
AATAAATTGAATCACGTCAAATTGATTCGACCTTTACCTCAGTATTCATT
GTACTTAATTGTAATTTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATACATTCGTTATAC
CCTCAAAAATCATAATAAAGCAGGCAGATGATAATCACATCAGTATTTTA
AACAATGATACCATATGTCTTTTTTTCCCCTTCTCCTAGCACGCGTTTTT
CTCTACAATATTATCAACTATATCTATAAGATATGCTAAAAATGGAGGGT
AAGGGAGCTCAAGTTCCCTCAAAAAAGGAACAGCGACGCAACTGCCTACC
GCATTTATTGTTCATATAGCCAAAAATTTTATTTTACTCTTATTAGCCCT
GTTTGACCTCACCAAAGAAAATGTTAATTTAGATAGGAAATAAAATCTTC
AAAACTCCTGATACTTTATGATGTAATGTATTGAAGTAGTCTGTATAAAA
AGTGCTACTTATTTTCTTTTCCTTGAGTTTCAGAAACTTTCAGACGGGTG
ATTTTTTCTGTTAATATTTTTTAAGCAAATATTGCCGAAAAGAAAATATA
ATCAATAAAATAAATTGTATTAAACTTATAGTATGAGCAACATTTAAGTA
TTTAAAAGGAATATTTGACAATCGAGAGTTATGAGCCGAAAGCCTTTTAA
CCTCACTATTTTTTTTATCCCACCCTAGCCCACCAATTTTGTCTGCAAAA
TTTTATGATAACCTATATAGGTTTAGTTGTTTTTGTAGTTTCAAAATTCA
ATCCTTTTTAAAATCAATTAGATTATTTAATATTGTTTGTATTAACGAAA
TTATCTTTATTTGGTGCACTTTTCTCTTCTTGAACATGGTCAAATTTGTA
TCTATATTATGTTTCAATTGCGTTTAAAAATAAAAATGTCAGCAAATATT
GATAAATTTACACTTTAAGCAAGAGTTTAAGAGCCAACGATTACCACTTA
ATGTTGTACATATGTTACAATTTTTTTACAAGGACTGTCAGTACTACGAG
TAGAAATAATTAAAAAAGTAAAAATAATGTAAATTGTTAAGTTTTTGGAT
AAAAAGAACAAAAAACTCTATACCGGATATAACTTTATATGTTTTTAGCA
TTGTTATGCAGGATTAAACTGAACCGAACTGAGACTGAACTAGAAATAAC
GAAATAAGCACCACAACAACACTATGTATAATTTACACATCTTCTTATAA
GTAGATTATGAAAAATGACTCCCACACAATTTTTTTTTTCGAATAGTTCC
TACTTACGAAGATAGCAAGGATTTTCGAGATATCCTAATTTCCGCAATGG
GAGAATATCTTCAAAATATAATAAAAACAGATTTACAAATAGTTCAAAAG
AAATGCTCATTTATGGATATGAGTCGAGATGAGAACGAGAAGAATATTGA
TTCGGATCTTATTCATCCTTCGTTAGTCCAGTCTTCTTCTTCAGGCTCTT
TGCCTGTTTTTTCCTAAATGGATAATTTTCTATCTTATTCATTGGAAGCT
CAAATCGTGTTGAAAAGAATGAATAGTTCTATCATAGTAGGTGAAATGAA
AATGAAGAGAGGTTGGGTTTGGAAGGGCACAACAGACTTGGTGAATCTAA
AGAGGAGTTTTAGAATTGGGTTATTATATCTCCTCCTTGGCTGTTCTTTT
AAAAAGACAAAAGCGAGAATTATGTCCAGGTATGAATTATAAGATTTATT
AAAAATTTCCTCAACTTATTATCATTCCTTGCAAGGCCCAAAGACAGGAG
GGCAAATATTAAAGGTATATTTGATAGAATTCATGACAAATTGGCAGAAA
ATAGGAATTTTGAGTACAAATTGGTTTTCTCAAAGAGGTATGAAGAAGAG
TATGGACAATTACGTATATTATTTACATCGTATTAATTGCAATTATTTAA
TTGAAGTAACCCAGAGTCTGAGACATGGAGTGGACTTATTGGCCTCTTAA
TCAAGGGAAATATAGATATGGTCGCTTCAGATCTAACAACAATCCTGGAA
CATGAGGAAGTAATTGACTTTGTTTCTCCTAATTACTATCAAAACGGATA
CGCCATTATTTTTCGGAAGCCTGTTCGAGAGTGGTCCTTTTTTAAGTTTA
TGGAAGTTCTAAAAAGTGAAGTATGGGTCTCTATTCTAGGTGGTCTTATT
TAAACAGCGTTTCTCCTTTGGTTCCTTGAAAAATACTCCCCCTTTTCTGC
TCGAAACAATTTGGTCAAATACAATGAGCCTATACGAGTATTTGATCTTA
GAGAATCCTTTTGGTTTGCAAAAACCTCATTTACACCTCTTGGAGGAGGT
CAGGATTTGTTTCATGTATGTATGTATCTATGTCAAAACTTAACTTGAAT
TTAATCAGGAGATCCACCAAAAAATATATCCGGACAAATTCAATCATCTA
CCTATTAGCTCTTTGTCGTTCTAATCTTTGCAACTTTTACTGCAAATCTA
GCAGCTTATTTAATTGTTGAAAGAATGAAAACATCAGTCAAAAATTTGGA
CGAACTTGTACAGCAATCCGAAATTAACTTTTCTCTAATGAGGAACTCAA
CCATAAAGGGTTATTTTTTGAATTTGGCAAAGGCTGAGGATGATATTTAT
ATGGCATGGAAGGGCATTTCCTTGAACAGTAAAAAATATAGTTATTCACA
AGTTTGGAACTATCCAGTGAAGCAAAAATTTCAACAACTTTTAGAAGCAA
TAGAGGGAGCTGGTACAGTTAGTAGCGAGGATGAAGGATTTAAAAGGGCT
TTAAAGGATTAGAATGGACTTTTTGCATTCATCCATGATGTGAACAACGT
AAATATTCAACTTTCTCCCCCTCAATTGAATAATAATTGTCATTCTATCA
CCCACCGGATAGGTCCGATATCAATTTTATTCAAATTGCAGTTACTCCTC
CATAAGTGAGACCTTTGGTGAACGTTCCCTAGCAAAAGCTATTCGTCCAA
GAAGTACTTTATAACGAGAGCTCTCAGAGGCAACAACTCTTCTACAAAAT
ACTAATTTTTTCAATTACCTCGAAAATAAATATTGGAAATCCTCTTGGAG
AGATAAATGTGAACCTGAGAAGGACTCTGAAGGGATTACATTACCATCCT
TGGGAGGTGCTTCTATATGTACTAGGATTGGAATCATCATTTCCATCATT
GTTCTGGTATACAAAATGATAGAGAAACGTCGGAAGGAGAAAAATGCTAT
CTATGGTATCCCGATACGAGTGAAAGAACAAATATATACAATCTGTAAAA
ATATCAACAAAGATCCGATATTGA
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