EMLSAP00000001113, EMLSAP00000001113 (polypeptide) Lepeophtheirus salmonis

Overview
NameEMLSAP00000001113
Unique NameEMLSAP00000001113
Typepolypeptide
OrganismLepeophtheirus salmonis (salmon louse)
Sequence length564
Associated RNAi Experiments

Nothing found

InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006028Gamma-aminobutyric acid A receptorPRINTSPR00253GABAARECEPTRcoord: 313..334
score: 25.99
coord: 347..368
score: 38.82
coord: 542..562
score: 40.46
coord: 287..307
score: 46.02
IPR006201Neurotransmitter-gated ion-channelPRINTSPR00252NRIONCHANNELcoord: 199..213
score: 45.67
coord: 153..164
score: 36.05
coord: 278..290
score: 25.86
coord: 105..121
score: 18.13
IPR006201Neurotransmitter-gated ion-channelPANTHERPTHR18945NEUROTRANSMITTER GATED ION CHANNELcoord: 84..564
IPR006029Neurotransmitter-gated ion-channel transmembrane domainPFAMPF02932Neur_chan_membcoord: 418..491
e-value: 2.4E-8
score: 34.0
coord: 292..404
e-value: 3.1E-14
score: 53.3
IPR006029Neurotransmitter-gated ion-channel transmembrane domainSUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 287..380
IPR006029Neurotransmitter-gated ion-channel transmembrane domainSUPERFAMILY90112Neurotransmitter-gated ion-channel transmembrane porecoord: 418..563
IPR006202Neurotransmitter-gated ion-channel ligand-bindingPFAMPF02931Neur_chan_LBDcoord: 69..235
e-value: 2.1E-21
score: 75.9
IPR006202Neurotransmitter-gated ion-channel ligand-bindingGENE3D2.70.170.10coord: 71..287
e-value: 1.9E-24
score: 85.6
IPR006202Neurotransmitter-gated ion-channel ligand-bindingSUPERFAMILY63712Nicotinic receptor ligand binding domain-likecoord: 69..235
NoneNo IPR availableGENE3D1.20.58.390coord: 288..375
e-value: 1.6E-20
score: 72.8
coord: 539..563
e-value: 1.4E-22
score: 79.4
coord: 416..501
e-value: 1.4E-22
score: 79.4
NoneNo IPR availablePANTHERPTHR18945:SF96GLYCINE RECEPTOR-RELATEDcoord: 84..564
NoneNo IPR availableTMHMMTMhelixcoord: 542..563
NoneNo IPR availableTMHMMTMhelixcoord: 283..305
NoneNo IPR availableTMHMMTMhelixcoord: 349..371
NoneNo IPR availableTMHMMTMhelixcoord: 415..434
NoneNo IPR availableTMHMMTMhelixcoord: 467..489
NoneNo IPR availableTMHMMTMhelixcoord: 438..455
NoneNo IPR availableTMHMMTMhelixcoord: 312..334
IPR018000Neurotransmitter-gated ion-channel, conserved sitePROSITEPS00236NEUROTR_ION_CHANNELcoord: 199..213

Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
EBI Gene Prediction Pipeline2013-07-17
InterproScan 52014-05-02
InterproScan 5, GO-Slims (generic)2014-05-10
Cross References
External references for this polypeptide
DatabaseAccession
Ensembl Metazoa (protein)EMLSAP00000001113 (primary cross-reference)
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesType
EMLSAT00000001113EMLSAT00000001113-696960Lepeophtheirus salmonismRNA


Sequences
The following sequences are available for this feature:

polypeptide sequence

>EMLSAP00000001113 ID=EMLSAP00000001113|Name=EMLSAP00000001113|organism=Lepeophtheirus salmonis|type=polypeptide|length=564bp
MYIIRQIAQGIGGQSPWQSSALRTILPRGLMTNESILYVFFLLIISAAVE
TRGSGFRCGTGNHLACTPRNYSKFDLPVKKGVNHITVSIDIAEVLRINDK
DYSITFSGYFNVKWQESRIELSPDFGEEVAGPGVNTTNNPNIVVPMSTEF
VKDVWMPDIFIYSLKTYKVMDVLNKLAGLWIGADKTILYSQATHITFICP
MRFDKFPLDTQVCKFQVGSCSYDDTKMRFMTENAGYQSPKTANSIALDYD
IQIKMLSKEDQVFLGGGLGNFSLAGFELVLHRYVSTYIITYYLPSGLFVI
VSWISFLIPMDVIPGRMALLVTLFLVLVNIFNTVTTNTPKAEGLTAIEAW
MLACILFVFGALIEYXAILFKKQRHVSAQHKLNIRVVCKDNLKYEVHEQR
PPPTRDVKGTHTETLVGLFVIVSWISFLIPMDVIPGRMGLLVMLFLVLVN
IFNTVTTNTPKAEGLTAIEAWMLACILFVFGALIEYAAILFKKQRYVSAQ
NKLNIRIVWKDNLKYEVYEQRPPPSTLSLQHLAEEYWRIDKFFLISFPIL
FFIFNIIYWLSFVM
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