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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 91..107 score: 57.38 coord: 140..148 score: 63.42 coord: 107..122 score: 60.45 coord: 148..156 score: 51.34 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | ZnF_C4 | coord: 88..159 e-value: 6.8E-37 score: 138.6 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 90..158 e-value: 6.9E-31 score: 106.1 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 91..117 |
IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 88..163 score: 21.04 |
IPR001723 | Steroid hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 338..353 score: 41.17 coord: 152..162 score: 47.6 coord: 249..270 score: 33.9 coord: 270..286 score: 42.69 coord: 395..412 score: 46.62 |
IPR000003 | Retinoid X receptor/HNF4 | PRINTS | PR00545 | RETINOIDXR | coord: 300..325 score: 56.8 coord: 326..344 score: 64.21 coord: 367..386 score: 60.6 coord: 159..172 score: 59.66 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | SMART | SM00430 | HOLI | coord: 248..407 e-value: 1.7E-43 score: 160.5 |
IPR000536 | Nuclear hormone receptor, ligand-binding, core | PFAM | PF00104 | Hormone_recep | coord: 253..419 e-value: 4.9E-32 score: 110.6 |
IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 87..152 e-value: 6.3E-32 score: 109.1 |
IPR008946 | Nuclear hormone receptor, ligand-binding | GENE3D | 1.10.565.10 | | coord: 153..434 e-value: 1.3E-77 score: 260.3 |
IPR008946 | Nuclear hormone receptor, ligand-binding | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 142..154 coord: 181..423 |
None | No IPR available | PANTHER | PTHR24083:SF38 | RETINOIC ACID RECEPTOR RXR-BETA | coord: 79..422 |
None | No IPR available | PANTHER | PTHR24083 | NUCLEAR HORMONE RECEPTOR | coord: 79..422 |
None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 89..168 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000001919 ID=EMLSAP00000001919|Name=EMLSAP00000001919|organism=Lepeophtheirus salmonis|type=polypeptide|length=442bp MDPTPPTPNHLLNPGYMPQSPVDLKPDASLLLTTLSNPQSTPPSSAYPVG ESMYGSQAPHPGVHGHARSTQSPPNNTYPPNHPLSGSKHFCSICGDRASG KHYGVYSCEGCKGFFKRTVRKELTYACRENRDCVIDKRQRNRCQYCRYMK CLDTGMKREAVQEERHRGSNGPNHNNNNNNNNNNSRNSEEVESSTSGGGG DMPIERIIEAEDVGEMKQDTSEFLLLDNNSSMSGGGSIGDMEIQRFGLAK KRIIHQLIEWAKLVPHFSELKVEDQVTLIRGGWNELLVAGLAFXSIKLND GILLGNGTIVTRENAHEAGVGHIFDRVLVELIAKMKEMQMDKAELGCLRA IILFNPDAKGLSDVTKVENLREKVYATLEEYTRSVHENEPSRFAKLLLRL PALRSIGLKCLEHLFFYKLVGDYLNDGNPLEKFIQSLLEECC back to top
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