|
|
Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 3531..3556 |
| None | No IPR available | COILS | Coil | Coil | coord: 3313..3334 |
| None | No IPR available | GENE3D | 1.10.510.10 | | coord: 2213..2368
e-value: 1.5E-17
score: 63.0 |
| None | No IPR available | GENE3D | 3.30.200.20 | | coord: 2142..2212
e-value: 1.2E-12
score: 47.4 |
| None | No IPR available | PANTHER | PTHR19876 | COATOMER | coord: 1..1251 |
| None | No IPR available | PANTHER | PTHR19876:SF1 | COATOMER ALPHA SUBUNIT | coord: 1..1251 |
| None | No IPR available | TMHMM | TMhelix | | coord: 2668..2686 |
| None | No IPR available | TMHMM | TMhelix | | coord: 2754..2776 |
| None | No IPR available | TMHMM | TMhelix | | coord: 2817..2839 |
| None | No IPR available | TMHMM | TMhelix | | coord: 2637..2656 |
| None | No IPR available | TMHMM | TMhelix | | coord: 2711..2733 |
| None | No IPR available | TMHMM | TMhelix | | coord: 2936..2958 |
| None | No IPR available | TMHMM | TMhelix | | coord: 2901..2923 |
| None | No IPR available | TMHMM | TMhelix | | coord: 2869..2886 |
| IPR020472 | G-protein beta WD-40 repeat | PRINTS | PR00320 | GPROTEINBRPT | coord: 286..300
score: 36.06
coord: 108..122
score: 37.22
coord: 150..164
score: 39.55 |
| IPR001046 | Natural resistance-associated macrophage like | PRINTS | PR00447 | NATRESASSCMP | coord: 2714..2737
score: 80.17
coord: 2868..2885
score: 60.67
coord: 2607..2633
score: 73.78
coord: 2840..2859
score: 83.8
coord: 2637..2656
score: 57.8
coord: 2662..2683
score: 66.18
coord: 2900..2919
score: 58.4 |
| IPR001046 | Natural resistance-associated macrophage like | PFAM | PF01566 | Nramp | coord: 2548..2925
e-value: 1.2E-105
score: 353.1 |
| IPR001046 | Natural resistance-associated macrophage like | TIGRFAM | TIGR01197 | TIGR01197 | coord: 2527..2924
e-value: 5.4E-167
score: 553.8 |
| IPR001046 | Natural resistance-associated macrophage like | HAMAP | MF_00221 | NRAMP | coord: 2512..2957
score: 38.397 |
| IPR001680 | WD40 repeat | SMART | SM00320 | WD40 | coord: 124..163
e-value: 1.1E-10
score: 51.5
coord: 200..239
e-value: 5.7E-5
score: 32.5
coord: 82..121
e-value: 0.0042
score: 26.3
coord: 302..340
e-value: 43.0
score: 6.7
coord: 2..37
e-value: 6.0
score: 12.1
coord: 260..299
e-value: 4.2E-7
score: 39.6
coord: 372..414
e-value: 180.0
score: 2.8
coord: 40..79
e-value: 0.073
score: 22.2 |
| IPR001680 | WD40 repeat | PFAM | PF00400 | WD40 | coord: 44..79
e-value: 0.0041
score: 16.8
coord: 203..238
e-value: 2.0E-7
score: 30.5
coord: 84..121
e-value: 2.6E-4
score: 20.6
coord: 126..163
e-value: 3.7E-10
score: 39.1
coord: 266..299
e-value: 8.7E-8
score: 31.6 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 47..88
score: 9.406 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 267..308
score: 15.053 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 207..248
score: 12.413 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 89..130
score: 11.11 |
| IPR001680 | WD40 repeat | PROSITE | PS50082 | WD_REPEATS_2 | coord: 131..165
score: 15.922 |
| IPR006692 | Coatomer, WD associated region | PFAM | PF04053 | Coatomer_WDAD | coord: 381..789
e-value: 3.7E-134
score: 447.7 |
| IPR001245 | Serine-threonine/tyrosine-protein kinase catalytic domain | PFAM | PF07714 | Pkinase_Tyr | coord: 2110..2353
e-value: 1.6E-23
score: 83.0 |
| IPR010714 | Coatomer, alpha subunit, C-terminal | PFAM | PF06957 | COPI_C | coord: 836..1247
e-value: 5.6E-157
score: 522.5 |
| IPR015943 | WD40/YVTN repeat-like-containing domain | GENE3D | 2.130.10.10 | | coord: 201..408
e-value: 1.9E-77
score: 259.6
coord: 4..166
e-value: 1.9E-77
score: 259.6 |
| IPR019775 | WD40 repeat, conserved site | PROSITE | PS00678 | WD_REPEATS_1 | coord: 150..164 |
| IPR017986 | WD40-repeat-containing domain | PROSITE | PS50294 | WD_REPEATS_REGION | coord: 5..349
score: 42.527 |
| IPR017986 | WD40-repeat-containing domain | SUPERFAMILY | 50978 | WD40 repeat-like | coord: 199..407
coord: 5..164 |
| IPR000719 | Protein kinase domain | PROSITE | PS50011 | PROTEIN_KINASE_DOM | coord: 2063..2365
score: 19.496 |
| IPR011048 | Cytochrome cd1-nitrite reductase-like, haem d1 domain | SUPERFAMILY | 51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | coord: 359..405
coord: 433..568
coord: 261..332 |
| IPR011009 | Protein kinase-like domain | SUPERFAMILY | 56112 | Protein kinase-like (PK-like) | coord: 2136..2370 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000004199 ID=EMLSAP00000004199|Name=EMLSAP00000004199|organism=Lepeophtheirus salmonis|type=polypeptide|length=4194bp
MLTKFETKSPRVKGLAFHPKRPWILASLHNGVIQLWDYRMCXLLEKFDEH
EGPXXGIXXHKXQPLFVSGGDDYKIKVWNYKLKRCLFQLLGHLDYIRXTF
FXHEYPXVLSASDDQTIRIWNWQSRSCVSVLTGHNHYVMSASFHPSEDLL
VSASLDQSVRVWDISGLRKKNVALGPDDVHHSLKSTGSAANNTDLFGVAX
CVVKHVXXGHDRGVNWASFHPTMPLIVSGADDRQIKLWRMNESKVDLRLG
GKHLGIGTVGAWEVDTCRGHYNNVSCVLFHPRQDLIISNSEDRTIRVWDT
AKRTCINTFRREHDRFWVISSHPTLNLFAAGHDSGMVVFKLERERPAYAL
HGNILYYVKERYLRKLDFTTSKDKPVMQLRGGTRSPVYSLSYNQAEDAVL
CCTRNSTLENSIYDLYSIPKDFDSSNPDTPEGKRSPGLTAVWVARNRFAV
LDRSHSLIIKNLKNELTKKIQTPNCSEIFPAGTGMLLLRDSEFVTLFDVQ
QKRNMGSVKIPKCRYVIWSNDMSTVALLSKHVILICDKKLELLCTINENT
RVKSATWDDSGVLIYTTSNHIKYAITNGDHGIIRTLDLPIYLTRIKGSQV
FCLDRECKPRILNIDPTEYKFKLALINRKYDEVLHMVRNAKLVGQSIIGY
LQKKGYPEVALHFVKDEKTRFALALECSDIDAAMEAAKALDDKECWESLG
EAALMEGNIQVVEVCYQRTKNFDKLSFLYLITGNLEKLRKMMKIAEIRKD
TSAHFQTALYLGDVRERVKVLKNCDQKILAYLTAKTHGLEEEAEEIKASL
PEDTKLPEPNPDAKLLQPCRPAMPDDSNWPRLTVSKGFFEGIKAVRSSGV
GGGVVNKAGVGKLAMEEEEEVPLDEGAWGDDLGLEEDDENEFKDAVEDGN
KSENDAGWDVDDDDLELPADLDPSPSKVVVDEGYFVPPTKGKNPTQLWLN
NSQLPVDHIVAGCFESAFRLLHDQVGVVNFEPYRSNFMANFSRSRTWFQA
LPGLPSLNGYPQSNWRDGSSKSGLPAVGVKMTDLVSRLQTCYQFTTSGKF
GDAVDKLRSIVYTIPLLVVETKPDEAEAQEMRTIVSNYLVGLIMESMRKE
LPKGSLEEQKRLCEMAAYFTHCNLQPIHQILTLRTACNLFFKLKNFKTSG
SFARRLLELGPKPEVASQTRKILQACDKNPVDEHKVEYDEFNPFDICGRS
FTPIYRGQAKEDCPFCLAKFKPEFKNELCNICNAGQIGKSVQGLKIRRKI
RETSTSMSDLSNGRGPATLCKPNSKSALPVDALHFAVWYGRTTEVKKLII
EGDHKIWLRNSFTPTWLNDLGPSCSQDNKIIISDYDIVQLDPRVLDYASE
XLLPKKEGVIEFKSNPSLFQCTGSASRTVETTRSPLSKWIDPSNWANLET
VPHLEKIPCWYEKVFLNSPFKIEFPKKPISAGSIVIDNENFQTTSSFRYF
VSHSPKLFFSNLPNNDSKISGSSICPEESGCECGNELFRKDVCNNIECQY
NCGSGLKPKNHCCYNICGAIIHFSTYGSSQIKISTLDRIIRSIYFEKNGM
VEYHISKVSKSEYEIVFINKNGSIAIAQSSAKRVESALKSNFQDTSKYYI
WTNYSGLGSATASRVKKTFMGIFVFCIIVGLIYAAIRVYNKSNSSLKQDL
GSYKDSATKQLNQLRERSRWGGGSGLLDSFTRFNNPDVELTVPGNEELEQ
SENASNLISISFKELTQKSGHEPSAPSSFENALYDSQINDVHASYEEKCE
IKEGTLHEDKGIDNPAYIEVSLSNDEEKICDRIGIQNPSYLKGEKDENNI
RDRLGIVNPSYEFDSNVTRDKLGNTLCIDNSMNDEIKDPIGIENPTHTEV
PSEKDDDKIRDRLGIENPTYSEAFEDDNDKIRDRLGIDNPVYSKTNNNDE
ENIRDRLGIDNPAYTETNHNIDGINDNSGLDDEGSIQGNILQSKQPDVNY
SIEVDIQEEHKTLSSDEEIATETESDKNDQIDNPFNNDKIDWALWQSDGE
KRLRIMELIETARRCTMKQSGKEALVEKNFSRNFGGRASLTTLFKKKLPV
KGGKNGKQEVDMGELVKNIHAMGFGKIYFGNGLKAAAISTIPYIDASDLS
PDRHYPTYSSGSFTEMSSKLWLHTRVTVRSLLEPPXSGALVDILISELEA
LCKLTHPQILLLMGVCQTKNYEGLMLVFEHVQLGSLYYCLHEKDCMPKIK
NAVDIILQIVDALIYLHSHGWLHCSLTSHAVHLVGPNVAKLSSFELAVED
KEEXKRNRTFDLLSDKGWQSIYNWLCPDILRGEPPSKCGDLYSLCCLIWE
ISTGQVPWGNLDPDEILVEIKLKGHSLPLDKKYIPKHLMMVLEQGLKLRG
DERDVDLHEIRDMLILTRKDAVKNEKKFNSNQSHQNTSSSVHRDSSTTDS
GVWLGSGNQPMRSYSSSAIQRSPQSSHSSHSYNYCHHSAEEDDGNSQKNI
DEFTGLRKTSSILKSIMEEQPTNPILKPSSDEGNTEEREEEEDEEEPPTF
DTYLDNQRIIIPHDDQDEQSWKFSFQKLWSFTGPGFLMSIAYLDPGNIES
DLQSGTVGGFKLLWILMWSTVLGLMMQRLAARLGVVTGLHLAEWCYKHYP
FVPRIILWLMVEVAIIGSDMQEVIGTAIAIYILSNKYIPIWGGVIITVFD
TFTFLAMDKYGLRKLEALFAFLIAIMAISFGYEYVVSGPDQIKVIEGIVI
PWCSNCGKKELLQAVGIIGAVIMPHNLYLHSALVKSRQIDRTKKSAISEG
NFYFFIESAIALFVSFFINVFVVSVFAEGLHGKTNIQVNETCHMNFHDEN
IFPRNNETVNADIYKGGIFLGCTYGFVALYIWAIGILAAGQSSTMTGTYA
GQFAMEGFLNLRWKRWQRVLLTRTVAILPTFLVAYYQNILDLSGMNDLLN
VLMSLQLPFALFPTIAMTSNLSIMTQDFINGTFTKISAVTLSFVVIGVNL
YFVLEYTAGIFAWKKYEKTFGSFPAKGFSSSHQVLSXHYNHDVDCNYDYV
KNRAKRHFLRNGSVSKNDYIRKTANKSDEDLRRRSLSSLYHATLVASDKY
NGIDLLSSSEHSSSTSDLSPYYSGDSLSGDITSQPEKRRSVSPEIGILRS
RSVPRTNSSTIPVSNSAAEFVAAHLQEANKRGYGRTFSNLSQKSRENLDE
NTDDHFRESKLGLSSFKSSNKFSNRSNDIKPASHAIQRNSPSPIKNVLSS
SNQLPTKNNKKDLVSSMSKLNLHIPVPASKPQVSSLASSIIHKNKSSSAI
RSPLGAFKEAYQSCAEKSTDLVTRKTKSLASLPKLTASKFDANTYELKPD
DIDAIRIIEESGKSEAQSKLNEQKRTLGKADRNADQIGSSSGKSFVKRYT
SINQIREKYKQKSEALSKSNTKEKDSQHKVLIHSSNYSKTKSAINLKEAI
TSKKDNERLGELINSGYPKKSKSKESKVPKSESFEDRPYTMESKILSSRN
IAQKDIANYRSHDLNKIPNSFNTKGPNPNSIIYSNTRCSDRQSRFKGVYS
SICDRKPSGDIVRSADRVSSPPRSQWSTKGVQNLIQNLESIQQQKLEEQQ
QVQNNTLYQTAPSEFLISSNNRSSNHNLPKPEGKESILEYNNSTNNFEAS
NNNNDAIEDNNLICFDAPAKSDNPDTVWNNNDIYGSNQVANSDWTKNSNS
MNNNQNNIYTTQCDNFGSGNNEIPDCYNNFSGNVDTQTTPYNDNSPSKQD
INNDSYSQPNYQDNYVNLNSENDLQYNYKNHGDDIQQQQINNDLNTIDAH
TPMNDQYNNQDVHGSLVIGSNNPQEEQFDNVNSGNSQDLHWDIDGNDQSN
NNVDGSSMNVWTTVKENNSVGLCSNDLENNCNVPYNNNSICPYNAENPXA
NTFQDVNLTQQEIDNHTNEYNNNNQFLNEKSSDANRVPSSQNILSVHQLN
CSIDPCSCTPRQSPILKSAGLSPSHPFALRTSTPNXYNSHKLHKTMQDAY
TSALAEAIEEEEITRDVENSSLNNSECWNTADSDMILFQQQHSGVRSSAM
VRHMEKKLKKKSSQKQILKDVESKRETNNVTFNSEVLEISNSVSTQTLDA
DMSSRRXSAASSFVSQPDTEDLYCDDELNPSLENDPNMQLTISRALESED
TTDFPQTPIFNDFDSILSMDTPSTGPTSLRSEYSEDKDTYXTASSXSDEE
DNSVSGDIEVEIASENTRDDENVNYQNDSSIEDSEEHFTTTSSQ back to top
|
