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Associated RNAi Experiments
InterPro
Analysis Name: InterproScan 5
Date Performed: 2014-05-02
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 1473..1494 |
| None | No IPR available | COILS | Coil | Coil | coord: 659..662 |
| None | No IPR available | COILS | Coil | Coil | coord: 1439..1467 |
| None | No IPR available | COILS | Coil | Coil | coord: 690..698 |
| None | No IPR available | GENE3D | 2.170.260.10 | | coord: 992..1083
e-value: 1.2E-4
score: 21.7
coord: 1118..1130
e-value: 1.2E-4
score: 21.7 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 259..311
e-value: 1.2E-8
score: 33.9 |
| None | No IPR available | PANTHER | PTHR14950 | HELICASE-RELATED | coord: 12..2087 |
| None | No IPR available | PANTHER | PTHR14950:SF3 | DICER-1 | coord: 12..2087 |
| None | No IPR available | SUPERFAMILY | 54768 | dsRNA-binding domain-like | coord: 2020..2087 |
| IPR000999 | Ribonuclease III domain | SMART | SM00535 | RIBOc | coord: 1851..2017
e-value: 8.0E-40
score: 148.3
coord: 1599..1808
e-value: 1.1E-19
score: 81.4 |
| IPR000999 | Ribonuclease III domain | PFAM | PF00636 | Ribonuclease_3 | coord: 1617..1787
e-value: 1.6E-31
score: 109.0
coord: 1872..1994
e-value: 2.6E-21
score: 76.0 |
| IPR000999 | Ribonuclease III domain | GENE3D | 1.10.1520.10 | | coord: 1837..1929
e-value: 1.1E-42
score: 144.5
coord: 1966..2017
e-value: 1.1E-42
score: 144.5 |
| IPR000999 | Ribonuclease III domain | GENE3D | 1.10.1520.10 | | coord: 1755..1804
e-value: 2.1E-34
score: 117.7
coord: 1589..1674
e-value: 2.1E-34
score: 117.7 |
| IPR000999 | Ribonuclease III domain | PROSITE | PS50142 | RNASE_3_2 | coord: 1578..1787
score: 21.805 |
| IPR000999 | Ribonuclease III domain | PROSITE | PS50142 | RNASE_3_2 | coord: 1836..1994
score: 34.982 |
| IPR000999 | Ribonuclease III domain | SUPERFAMILY | 69065 | RNase III domain-like | coord: 1761..1804
coord: 1586..1674 |
| IPR000999 | Ribonuclease III domain | SUPERFAMILY | 69065 | RNase III domain-like | coord: 1968..2015
coord: 1836..1929 |
| IPR003100 | Argonaute/Dicer protein, PAZ domain | SMART | SM00949 | PAZ | coord: 980..1154
e-value: 6.0E-40
score: 148.7 |
| IPR003100 | Argonaute/Dicer protein, PAZ domain | PFAM | PF02170 | PAZ | coord: 997..1151
e-value: 1.2E-36
score: 124.8 |
| IPR003100 | Argonaute/Dicer protein, PAZ domain | PROSITE | PS50821 | PAZ | coord: 983..1130
score: 28.096 |
| IPR003100 | Argonaute/Dicer protein, PAZ domain | SUPERFAMILY | 101690 | PAZ domain | coord: 1118..1130
coord: 1015..1083 |
| IPR001650 | Helicase, C-terminal | PFAM | PF00271 | Helicase_C | coord: 259..311
e-value: 1.6E-6
score: 27.7 |
| IPR005034 | Dicer dimerisation domain | PFAM | PF03368 | Dicer_dimer | coord: 392..479
e-value: 1.2E-24
score: 85.7 |
| IPR005034 | Dicer dimerisation domain | PROSITE | PS51327 | DICER_DSRBF | coord: 391..483
score: 25.812 |
| IPR014720 | Double-stranded RNA-binding domain | PROSITE | PS50137 | DS_RBD | coord: 2019..2085
score: 8.518 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 259..313 |
Analyses
This polypeptide is derived from or has results from the following analyses
Cross References
External references for this polypeptide
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >EMLSAP00000004598 ID=EMLSAP00000004598|Name=EMLSAP00000004598|organism=Lepeophtheirus salmonis|type=polypeptide|length=2092bp
MYPKIKARINSRIITLTAFLFNGDKTLGSLDKRLSKLENTFGNRIETSCE
VLTTLRYVSKPRFGVLTFIQSKEPNEVESQIENSIQGFINFLKNHRFSLE
ETYGEDFEDIIQEIPDPSKLPLKLIDDFLNILRTCGVWCAERAALLLTIK
IDKLKTREKYERHYLLLSVLYTEMLKICKICDDAFADLTDREKMTKYSKP
KLLRLMSVLLQYKPEHITDHSEDPKEKESKDESSTKEEEKKVNAPPPEEE
AEETDEGLLNHRKQEEGLRRFRMRECNILISNSLLEVGIDGVRCNLVLAF
DAPDSFHTYAHYKVKAKSSVSWFLSLCQEDKLESYLNSLKEYHSIEKSLV
DRCQYKDPSVEERYLSDANDHIITPFIPKNLYYPTCYLKNSILLLNRYCA
KLPSDTFTRLTPLAGILKTEGGGYICGIQLPINCPLKKIIIGLVMPNETL
AKRAAAYAAILELHKIGELDPFMNPVGKDGTGHAAYLNNRFLKHRNYHGN
RTYKKGSSSNSDNNSKEALTEKVLNNNNSKEESSGETFIKIESESKDGHL
HGEEIDTQTPSNIEESSSETFIKGEIESKDDLSLGDGVDAQSPSNMEELP
IIIMEDMIVQSQEIKEEEQFEKVENESESKDVHSHRDEIDAESDSNIDEL
SILMENVSIQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSNAMEEEKVE
KVSQSNEDGIKAPKEEVCKISESKDALLSTESKDLEGVLGEEXIEVSSEA
CVAANDKFESKDIMENASDEKKDVDAEQNNNPVTESNTTVNDKSESKDVA
DNAQSVDNTKTLPSGPHFDPPRPGTTKRRQYYYKKVAGCLKPKNNDPSPI
SFRLYHLNMELSCPIPDDQNTRGRKIYPPENSVQGFGFLVRGGNSIPPIC
PFPIYTRSGEVLVEIKEKKDSILLTEEEYELIICFHRYTFSKVLRLEKYP
MQFTPDKSRNSILILPMVKSTEQESELGFIIDWDFLRRIKEENEKKMSVV
SDEDRTDYTFDKEDYLDAVIMPWYRNQDQPQYFYVAEICEHLNPTSDFPG
QGFETFSKYYQTKYNITIQNLEQPLLDVDHTSHRLNFLTPRYVNRKGVAL
PTSSEETKRNKRENLEQKQILVPELCQIHPFPXSLWRQTVSLPCILYRIN
GLLIADDLRSLIAREMSFGKPELDSDFVWPPLNFGWTLADVLKNRDNALA
LNTQDNPKKNRRIVNSTTHVIITEALSPVSDTPAIEEIFDDEEDEGGSSK
GDGDDLTRLSDRIMNKMNEEDNKRKQRQLEIGTWSNDLIENVGKQSKSIR
SSSIGGKFLRFQDEFDEEDLELLDPNMALPDNLTLLSNELLPKTLETEGG
SKDWGTGIEQKIFRVGSPTFFSNPNINIPGMMDDLDGLSCSDSDDDEDFY
ENFDSYRRKALDFNNPNSSVTQDGSVRIEFRGENMAEAIEDEHEENLRVE
SLARNLEEEAKMLSEVPWPEEQNEEAEDEEKDIEDQKSENEMDSIELEVI
VLKEKDTFNRYGFPEKQSCVEYQKLEYDPEKNAVMDEKEVVETFMKDFNI
NNMDIMVPIDYPKDECEFTGVLPRDSDEEMSFSFDHQPELVSHPGPSPSI
ILQGLTMSNSNDAINLERLETIGDSFLKYAIXSYLFNVYDTVHEGRLSHL
RSKQVSNLNLFKLGRKKKLGECMIATKFEPHDNWLPPSYHVQPELEQALI
ESGVPANLWNMAELPSTDFGRMTTKEIVELIQEKSRTAQQPGKSSTESVQ
DMPSFVPYNLLTQHSIPDKSIADCVEALIGAYLISCGQRGALLFMTWLGL
KVIPPEKNEGRSISSSQKVEHLPHIERQLNFFLSGYEEFEELIGYKFKDK
TYLLQSFSHASFYPNRITDCYQRLXFLGDAILDYLITRHLYEDPRQHSPG
ALTDLRSALVNNTIFAFLAVKFQFHKYFKHFSPGLQTVIDRFVKLQVQNE
FKVFDEFYLIEEDDDSEEAEDIEVPKALGDIFESVAGAIFLDSGLSLDAV
WCIYFRMMQTEIEQFSSNVPKSPIRELLELEPETAKFGKPEKLADGKRVR
VSVEVFGKGTFKGIGRNYRIAKCTAAKCALRALKKSSHSHHK back to top
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